Wall clock time and date at job start Sat Apr 11 2020 05:40:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86795 * 119.99985 * 2 1 4 4 H 1.48501 * 109.47088 * 270.27658 * 3 2 1 5 5 H 1.48505 * 109.47015 * 30.27573 * 3 2 1 6 6 H 1.48498 * 109.47362 * 150.28000 * 3 2 1 7 7 C 1.38805 * 119.99846 * 180.28098 * 2 1 3 8 8 H 1.08000 * 119.99635 * 359.71891 * 7 2 1 9 9 S 1.76192 * 119.99929 * 179.72260 * 7 2 1 10 10 C 1.81001 * 100.00053 * 179.97438 * 9 7 2 11 11 C 1.50701 * 109.46896 * 179.97438 * 10 9 7 12 12 O 1.21283 * 120.00404 * 0.02562 * 11 10 9 13 13 N 1.34779 * 119.99843 * 179.97438 * 11 10 9 14 14 C 1.47299 * 135.91500 * 359.62727 * 13 11 10 15 15 C 1.52551 * 87.56719 * 153.98683 * 14 13 11 16 16 C 1.47292 * 135.91626 * 179.97438 * 13 11 10 17 17 C 1.53130 * 116.55945 * 268.67597 * 15 14 13 18 18 C 1.54692 * 104.56181 * 228.34242 * 17 15 14 19 19 N 1.48663 * 104.65996 * 23.68219 * 18 17 15 20 20 C 1.46897 * 110.99980 * 201.53580 * 19 18 17 21 21 H 1.09002 * 110.43861 * 174.42889 * 20 19 18 22 22 C 1.54633 * 110.48504 * 296.96333 * 20 19 18 23 23 C 1.54689 * 101.66760 * 143.39587 * 22 20 19 24 24 N 1.46759 * 105.53498 * 334.73886 * 23 22 20 25 25 C 1.34419 * 111.30060 * 16.92915 * 24 23 22 26 26 O 1.21284 * 124.93927 * 179.55818 * 25 24 23 27 27 C 1.48849 * 104.43401 * 321.21543 * 19 18 17 28 28 H 0.97000 * 120.00210 * 359.72456 * 1 2 3 29 29 H 1.08998 * 109.46924 * 299.99540 * 10 9 7 30 30 H 1.08996 * 109.46816 * 60.00287 * 10 9 7 31 31 H 1.08997 * 113.52078 * 268.63850 * 14 13 11 32 32 H 1.08999 * 113.51483 * 39.24906 * 14 13 11 33 33 H 1.09000 * 113.52196 * 320.76111 * 16 13 11 34 34 H 1.09008 * 113.51942 * 91.29948 * 16 13 11 35 35 H 1.09005 * 110.41474 * 347.10712 * 17 15 14 36 36 H 1.08995 * 110.42204 * 109.57157 * 17 15 14 37 37 H 1.08996 * 110.40088 * 142.47664 * 18 17 15 38 38 H 1.08998 * 110.39925 * 264.88524 * 18 17 15 39 39 H 1.08999 * 110.96863 * 261.59270 * 22 20 19 40 40 H 1.08997 * 110.96964 * 25.35791 * 22 20 19 41 41 H 1.08999 * 110.29293 * 215.68093 * 23 22 20 42 42 H 1.08999 * 110.21075 * 93.75927 * 23 22 20 43 43 H 0.97000 * 124.35100 * 196.94122 * 24 23 22 44 44 H 1.09001 * 110.47493 * 279.66850 * 27 19 18 45 45 H 1.09006 * 110.46923 * 157.06377 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4920 2.0498 -1.4001 5 1 1.4506 2.6510 0.7059 6 1 3.5508 1.4385 0.6941 7 6 2.0103 -1.2021 -0.0059 8 1 1.4703 -2.1374 -0.0059 9 16 3.7722 -1.2021 -0.0133 10 6 4.0865 -2.9846 -0.0182 11 6 5.5730 -3.2325 -0.0256 12 8 6.3440 -2.2963 -0.0269 13 7 6.0457 -4.4947 -0.0297 14 6 5.4571 -5.8449 -0.0224 15 6 6.7312 -6.3335 -0.7042 16 6 7.3763 -5.1262 -0.0374 17 6 6.7278 -6.3431 -2.2355 18 6 7.2604 -7.7446 -2.6168 19 7 6.9710 -8.5926 -1.4305 20 6 7.8368 -9.7791 -1.4078 21 1 7.6867 -10.3422 -0.4867 22 6 7.5622 -10.6730 -2.6393 23 6 8.9814 -11.1899 -2.9734 24 7 9.9032 -10.1807 -2.4388 25 6 9.2883 -9.3783 -1.5528 26 8 9.8201 -8.4661 -0.9561 27 6 7.2476 -7.7081 -0.2658 28 1 -0.4850 0.8400 0.0040 29 1 3.6474 -3.4334 0.8727 30 1 3.6399 -3.4297 -0.9073 31 1 5.3158 -6.2524 0.9787 32 1 4.5670 -5.9348 -0.6451 33 1 8.0980 -4.6125 -0.6726 34 1 7.7647 -5.3345 0.9596 35 1 5.7151 -6.2053 -2.6143 36 1 7.3884 -5.5672 -2.6222 37 1 6.7355 -8.1251 -3.4930 38 1 8.3336 -7.7054 -2.8031 39 1 6.8954 -11.4963 -2.3828 40 1 7.1567 -10.0871 -3.4641 41 1 9.1063 -11.2809 -4.0524 42 1 9.1548 -12.1521 -2.4917 43 1 10.8362 -10.1027 -2.6924 44 1 8.3180 -7.6667 -0.0641 45 1 6.7061 -8.0558 0.6141 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001147031550.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:16 Heat of formation + Delta-G solvation = -8.803962 kcal Electronic energy + Delta-G solvation = -27081.742510 eV Core-core repulsion = 23227.203827 eV Total energy + Delta-G solvation = -3854.538683 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.67948 -40.52292 -38.23081 -36.97100 -36.46872 -32.41748 -32.34318 -30.46900 -29.84807 -28.76213 -27.11646 -26.15007 -25.60081 -24.84901 -22.85692 -22.22091 -20.28174 -19.67963 -18.63500 -17.90674 -17.64498 -17.29218 -16.64509 -16.15153 -15.90793 -15.70077 -15.24262 -14.92495 -14.70337 -14.49535 -14.36123 -14.06799 -13.93485 -13.51852 -13.35159 -13.06157 -12.89149 -12.78458 -12.54200 -12.41140 -12.07171 -11.86327 -11.61839 -11.55626 -11.46807 -11.24665 -11.15157 -10.98267 -10.77022 -10.57130 -10.42908 -9.82701 -9.70278 -9.42162 -8.97632 -8.69796 -8.57170 -8.46413 -6.88936 -6.26328 -3.97745 2.02363 2.65478 2.78757 3.00982 3.18138 3.34475 3.35608 3.53466 3.61336 3.82861 3.89882 4.11484 4.18817 4.34562 4.36609 4.43001 4.47928 4.62084 4.80639 4.87771 4.90689 4.93400 5.09851 5.12677 5.25958 5.34240 5.34962 5.36868 5.40801 5.45109 5.52251 5.57079 5.62979 5.71737 5.80025 5.83634 5.97290 6.03660 6.07240 6.14929 6.34542 6.42277 6.50584 7.68791 7.87654 7.96893 8.44434 8.50535 9.19905 10.82872 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.032398 B = 0.002089 C = 0.002027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.055165 B =13401.546278 C =13807.354483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.095 3.905 3 Si 0.857 3.143 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.235 1.235 7 C -0.520 4.520 8 H 0.088 0.912 9 S -0.143 6.143 10 C -0.114 4.114 11 C 0.560 3.440 12 O -0.519 6.519 13 N -0.650 5.650 14 C 0.118 3.882 15 C -0.097 4.097 16 C 0.120 3.880 17 C -0.094 4.094 18 C 0.028 3.972 19 N -0.482 5.482 20 C 0.040 3.960 21 H 0.121 0.879 22 C -0.125 4.125 23 C 0.098 3.902 24 N -0.733 5.733 25 C 0.490 3.510 26 O -0.523 6.523 27 C 0.026 3.974 28 H 0.270 0.730 29 H 0.096 0.904 30 H 0.095 0.905 31 H 0.086 0.914 32 H 0.083 0.917 33 H 0.077 0.923 34 H 0.083 0.917 35 H 0.081 0.919 36 H 0.076 0.924 37 H 0.085 0.915 38 H 0.047 0.953 39 H 0.098 0.902 40 H 0.090 0.910 41 H 0.082 0.918 42 H 0.075 0.925 43 H 0.409 0.591 44 H 0.094 0.906 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.816 -29.137 -6.369 34.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.113 4.113 3 Si 0.682 3.318 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.159 1.159 7 C -0.667 4.667 8 H 0.106 0.894 9 S 0.083 5.917 10 C -0.264 4.264 11 C 0.350 3.650 12 O -0.394 6.394 13 N -0.388 5.388 14 C -0.006 4.006 15 C -0.098 4.098 16 C -0.003 4.003 17 C -0.132 4.132 18 C -0.100 4.100 19 N -0.205 5.205 20 C -0.073 4.073 21 H 0.139 0.861 22 C -0.164 4.164 23 C -0.027 4.027 24 N -0.389 5.389 25 C 0.275 3.725 26 O -0.398 6.398 27 C -0.101 4.101 28 H 0.080 0.920 29 H 0.114 0.886 30 H 0.114 0.886 31 H 0.104 0.896 32 H 0.101 0.899 33 H 0.095 0.905 34 H 0.102 0.898 35 H 0.100 0.900 36 H 0.094 0.906 37 H 0.103 0.897 38 H 0.065 0.935 39 H 0.117 0.883 40 H 0.109 0.891 41 H 0.100 0.900 42 H 0.093 0.907 43 H 0.247 0.753 44 H 0.112 0.888 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 18.277 -27.117 -6.018 33.251 hybrid contribution 0.430 -0.207 -0.128 0.494 sum 18.708 -27.324 -6.146 33.680 Atomic orbital electron populations 1.69941 1.05885 1.27731 1.48166 1.24713 0.94460 0.98955 0.93212 0.86731 0.81925 0.83268 0.79919 1.19208 1.19940 1.15929 1.22309 0.88214 0.97536 1.58662 0.89380 1.84787 1.09325 1.00145 1.97417 1.23200 0.93575 1.03990 1.05675 1.19872 0.90339 0.79943 0.74893 1.90708 1.58977 1.40868 1.48835 1.49693 1.09554 1.04332 1.75261 1.22996 0.96928 0.80139 1.00495 1.22065 0.97411 0.94147 0.96191 1.22793 0.87475 0.89564 1.00472 1.21929 1.02647 0.95934 0.92697 1.23303 0.99276 0.93160 0.94221 1.65784 1.46403 1.04955 1.03327 1.22736 0.88167 0.94881 1.01540 0.86097 1.22760 0.96035 1.00011 0.97547 1.22167 0.88959 0.91597 0.99932 1.46355 1.13947 1.33648 1.44975 1.22050 0.90600 0.81419 0.78437 1.90716 1.71325 1.29693 1.48103 1.23280 1.03104 0.90056 0.93705 0.91966 0.88609 0.88649 0.89561 0.89896 0.90457 0.89846 0.89987 0.90557 0.89654 0.93515 0.88329 0.89116 0.89994 0.90706 0.75275 0.88785 0.89476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.90 13.97 55.49 0.78 -26.12 16 2 C 0.10 2.83 5.50 -17.43 -0.10 2.74 16 3 Si 0.86 22.22 27.74 -169.99 -4.71 17.50 16 4 H -0.27 -6.84 7.11 56.52 0.40 -6.43 16 5 H -0.27 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.24 -6.12 6.74 56.52 0.38 -5.74 16 7 C -0.52 -15.29 10.04 30.94 0.31 -14.98 16 8 H 0.09 2.69 8.03 -52.49 -0.42 2.27 16 9 S -0.14 -3.77 18.55 -107.50 -1.99 -5.76 16 10 C -0.11 -2.37 5.98 36.01 0.22 -2.15 16 11 C 0.56 11.06 8.09 -10.98 -0.09 10.97 16 12 O -0.52 -12.28 16.64 5.55 0.09 -12.19 16 13 N -0.65 -9.73 3.68 -185.15 -0.68 -10.41 16 14 C 0.12 1.28 7.70 -7.63 -0.06 1.22 16 15 C -0.10 -0.96 1.29 -154.93 -0.20 -1.16 16 16 C 0.12 1.49 7.92 -7.78 -0.06 1.42 16 17 C -0.09 -0.90 6.53 -25.77 -0.17 -1.07 16 18 C 0.03 0.22 5.52 -1.96 -0.01 0.21 16 19 N -0.48 -3.65 5.44 -222.22 -1.21 -4.86 16 20 C 0.04 0.23 3.13 -67.72 -0.21 0.02 16 21 H 0.12 0.60 8.14 -51.93 -0.42 0.18 16 22 C -0.13 -0.37 6.69 -24.98 -0.17 -0.54 16 23 C 0.10 0.20 7.79 -3.01 -0.02 0.18 16 24 N -0.73 -3.54 6.24 -59.09 -0.37 -3.91 16 25 C 0.49 3.88 6.07 -10.86 -0.07 3.81 16 26 O -0.52 -6.23 14.93 5.55 0.08 -6.15 16 27 C 0.03 0.23 5.77 -2.62 -0.02 0.21 16 28 H 0.27 7.67 8.31 -40.82 -0.34 7.33 16 29 H 0.10 1.87 8.14 -51.92 -0.42 1.45 16 30 H 0.10 1.86 8.14 -51.92 -0.42 1.43 16 31 H 0.09 0.80 7.99 -51.93 -0.41 0.39 16 32 H 0.08 0.87 7.95 -51.93 -0.41 0.46 16 33 H 0.08 1.02 7.93 -51.93 -0.41 0.61 16 34 H 0.08 0.93 8.14 -51.92 -0.42 0.51 16 35 H 0.08 0.79 7.86 -51.93 -0.41 0.39 16 36 H 0.08 0.80 7.83 -51.93 -0.41 0.39 16 37 H 0.09 0.56 7.20 -51.93 -0.37 0.19 16 38 H 0.05 0.43 6.22 -51.93 -0.32 0.10 16 39 H 0.10 0.15 8.14 -51.93 -0.42 -0.27 16 40 H 0.09 0.31 6.45 -51.93 -0.34 -0.02 16 41 H 0.08 0.06 8.14 -51.93 -0.42 -0.36 16 42 H 0.07 0.06 8.14 -51.93 -0.42 -0.36 16 43 H 0.41 1.60 8.96 -40.82 -0.37 1.23 16 44 H 0.09 0.98 5.03 -51.93 -0.26 0.72 16 45 H 0.09 0.66 7.86 -51.93 -0.41 0.26 16 LS Contribution 370.78 15.07 5.59 5.59 Total: -1.00 -37.39 370.78 -9.73 -47.12 By element: Atomic # 1 Polarization: 4.96 SS G_CDS: -6.66 Total: -1.69 kcal Atomic # 6 Polarization: 1.52 SS G_CDS: -0.64 Total: 0.88 kcal Atomic # 7 Polarization: -43.81 SS G_CDS: -1.48 Total: -45.30 kcal Atomic # 8 Polarization: -18.51 SS G_CDS: 0.18 Total: -18.33 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -4.71 Total: 17.50 kcal Atomic # 16 Polarization: -3.77 SS G_CDS: -1.99 Total: -5.76 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -37.39 -9.73 -47.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001147031550.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.316 kcal (2) G-P(sol) polarization free energy of solvation -37.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds