Wall clock time and date at job start Sat Apr 11 2020 05:40:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.33390 * 125.20482 * 2 1 4 4 C 1.38417 * 114.92005 * 179.75002 * 3 2 1 5 5 C 1.33390 * 114.92073 * 0.43240 * 4 3 2 6 6 C 1.50706 * 125.20186 * 179.86308 * 5 4 3 7 7 H 1.09000 * 109.47318 * 359.71040 * 6 5 4 8 8 C 1.53002 * 109.46925 * 239.71807 * 6 5 4 9 9 C 1.50698 * 109.47294 * 119.72000 * 6 5 4 10 10 O 1.21282 * 120.00025 * 359.97438 * 9 6 5 11 11 N 1.34776 * 120.00035 * 180.02562 * 9 6 5 12 12 C 1.46496 * 119.99846 * 179.97438 * 11 9 6 13 13 C 1.53006 * 109.46995 * 179.97438 * 12 11 9 14 14 N 1.46901 * 109.46954 * 180.02562 * 13 12 11 15 15 C 1.46903 * 110.99813 * 179.97438 * 14 13 12 16 16 C 1.50701 * 109.47245 * 179.97438 * 15 14 13 17 17 O 1.21294 * 119.99602 * 359.97438 * 16 15 14 18 18 N 1.34769 * 119.99843 * 180.02562 * 16 15 14 19 19 C 1.37099 * 119.99914 * 180.02562 * 18 16 15 20 20 H 1.08003 * 119.99797 * 359.97438 * 19 18 16 21 21 C 1.38952 * 120.00057 * 179.97438 * 19 18 16 22 22 N 1.31403 * 119.99980 * 0.02562 * 21 19 18 23 23 Si 1.86805 * 119.99729 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47291 * 0.02562 * 23 21 19 25 25 H 1.48498 * 109.46901 * 120.00231 * 23 21 19 26 26 H 1.48498 * 109.47023 * 240.00195 * 23 21 19 27 27 S 1.75884 * 109.59487 * 359.59438 * 5 4 3 28 28 H 1.08994 * 109.47481 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47282 * 300.00235 * 1 2 3 30 30 H 1.09004 * 109.46879 * 59.99574 * 1 2 3 31 31 H 1.08005 * 122.53660 * 359.97438 * 3 2 1 32 32 H 1.07999 * 122.53924 * 180.27565 * 4 3 2 33 33 H 1.09004 * 109.46930 * 299.99901 * 8 6 5 34 34 H 1.09004 * 109.47059 * 59.99503 * 8 6 5 35 35 H 1.08992 * 109.47060 * 179.97438 * 8 6 5 36 36 H 0.97002 * 119.99767 * 359.97438 * 11 9 6 37 37 H 1.08998 * 109.47703 * 299.99475 * 12 11 9 38 38 H 1.09001 * 109.47464 * 60.00214 * 12 11 9 39 39 H 1.09001 * 109.47002 * 299.99701 * 13 12 11 40 40 H 1.08992 * 109.47533 * 59.99650 * 13 12 11 41 41 H 1.00893 * 111.00875 * 56.04252 * 14 13 12 42 42 H 1.08993 * 109.46917 * 299.99686 * 15 14 13 43 43 H 1.08998 * 109.46940 * 59.99328 * 15 14 13 44 44 H 0.97003 * 120.00419 * 359.97438 * 18 16 15 45 45 H 0.97003 * 119.99598 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2760 1.0899 0.0000 4 6 3.6379 0.8428 0.0055 5 6 3.9750 -0.4478 0.0008 6 6 5.3860 -0.9772 0.0022 7 1 6.0872 -0.1427 0.0024 8 6 5.6112 -1.8320 -1.2466 9 6 5.6058 -1.8184 1.2330 10 8 4.7054 -1.9726 2.0309 11 7 6.8031 -2.3987 1.4478 12 6 7.0168 -3.2160 2.6446 13 6 8.4494 -3.7536 2.6459 14 7 8.6635 -4.5737 3.8457 15 6 10.0313 -5.1084 3.8806 16 6 10.2133 -5.9419 5.1230 17 8 9.2941 -6.0767 5.9028 18 7 11.3976 -6.5365 5.3679 19 6 11.5631 -7.2952 6.4978 20 1 10.7444 -7.4159 7.1918 21 6 12.7840 -7.9087 6.7501 22 7 13.7802 -7.7614 5.9060 23 14 13.0095 -8.9418 8.2901 24 1 11.7462 -8.9493 9.0706 25 1 13.3618 -10.3323 7.9060 26 1 14.0997 -8.3655 9.1174 27 16 2.5209 -1.4372 0.0005 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 1.8669 2.0895 -0.0004 32 1 4.3720 1.6349 0.0105 33 1 4.9100 -2.6666 -1.2469 34 1 5.4522 -1.2235 -2.1370 35 1 6.6318 -2.2145 -1.2459 36 1 7.5233 -2.2751 0.8098 37 1 6.8563 -2.6069 3.5341 38 1 6.3160 -4.0508 2.6445 39 1 8.6096 -4.3629 1.7565 40 1 9.1506 -2.9192 2.6458 41 1 7.9835 -5.3169 3.9019 42 1 10.2021 -5.7269 2.9996 43 1 10.7437 -4.2836 3.8892 44 1 12.1328 -6.4284 4.7444 45 1 14.6326 -8.1894 6.0824 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001147771562.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:22 Heat of formation + Delta-G solvation = -48.227969 kcal Electronic energy + Delta-G solvation = -25213.584681 eV Core-core repulsion = 21357.336445 eV Total energy + Delta-G solvation = -3856.248236 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.22049 -38.37388 -38.14513 -36.34338 -34.67217 -34.32046 -33.73370 -31.46532 -31.23592 -29.30634 -26.90695 -26.17792 -24.51577 -23.72544 -22.99455 -22.11362 -20.57356 -19.32527 -19.23511 -17.97250 -17.73205 -16.68371 -16.23682 -16.15829 -15.92126 -15.51821 -15.24241 -14.60030 -14.44881 -14.30483 -14.15289 -13.87537 -13.80368 -13.49058 -13.40817 -13.16749 -12.97216 -12.77438 -12.44847 -12.30296 -12.16853 -11.92741 -11.92249 -11.66580 -11.53481 -11.47434 -11.42932 -11.06033 -10.84132 -10.34888 -10.23923 -10.05854 -9.53602 -9.28219 -8.70327 -8.55765 -8.52097 -8.14839 -7.98063 -6.43441 -3.84180 0.73353 1.40419 1.81657 2.38854 2.44587 2.90781 3.15736 3.26584 3.34183 3.88357 4.09928 4.12120 4.31603 4.44850 4.56858 4.58527 4.77502 4.87393 4.93068 4.97986 5.13705 5.16079 5.17321 5.23604 5.24584 5.28020 5.36124 5.38692 5.56374 5.61264 5.70463 5.80853 5.88667 5.89242 5.92692 6.01768 6.15806 6.24200 6.26957 7.07272 7.22751 7.54222 7.54857 7.97042 8.04816 8.59284 9.16462 9.52197 10.03509 10.74344 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.035263 B = 0.001453 C = 0.001420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.840674 B =19272.249953 C =19718.312445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.188 4.188 3 C -0.145 4.145 4 C -0.131 4.131 5 C -0.165 4.165 6 C -0.040 4.040 7 H 0.114 0.886 8 C -0.144 4.144 9 C 0.512 3.488 10 O -0.521 6.521 11 N -0.727 5.727 12 C 0.120 3.880 13 C 0.050 3.950 14 N -0.666 5.666 15 C 0.052 3.948 16 C 0.440 3.560 17 O -0.582 6.582 18 N -0.563 5.563 19 C -0.299 4.299 20 H 0.104 0.896 21 C 0.022 3.978 22 N -0.902 5.902 23 Si 0.930 3.070 24 H -0.268 1.268 25 H -0.282 1.282 26 H -0.281 1.281 27 S 0.141 5.859 28 H 0.066 0.934 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.136 0.864 32 H 0.136 0.864 33 H 0.063 0.937 34 H 0.073 0.927 35 H 0.069 0.931 36 H 0.399 0.601 37 H 0.080 0.920 38 H 0.068 0.932 39 H 0.033 0.967 40 H 0.077 0.923 41 H 0.352 0.648 42 H 0.045 0.955 43 H 0.087 0.913 44 H 0.392 0.608 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.747 17.037 -20.687 32.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.306 4.306 3 C -0.175 4.175 4 C -0.162 4.162 5 C -0.283 4.283 6 C -0.063 4.063 7 H 0.132 0.868 8 C -0.202 4.202 9 C 0.297 3.703 10 O -0.396 6.396 11 N -0.379 5.379 12 C -0.003 4.003 13 C -0.080 4.080 14 N -0.299 5.299 15 C -0.080 4.080 16 C 0.225 3.775 17 O -0.466 6.466 18 N -0.200 5.200 19 C -0.429 4.429 20 H 0.122 0.878 21 C -0.179 4.179 22 N -0.543 5.543 23 Si 0.757 3.243 24 H -0.192 1.192 25 H -0.208 1.208 26 H -0.207 1.207 27 S 0.407 5.593 28 H 0.085 0.915 29 H 0.094 0.906 30 H 0.093 0.907 31 H 0.154 0.846 32 H 0.154 0.846 33 H 0.082 0.918 34 H 0.092 0.908 35 H 0.088 0.912 36 H 0.234 0.766 37 H 0.099 0.901 38 H 0.087 0.913 39 H 0.051 0.949 40 H 0.095 0.905 41 H 0.172 0.828 42 H 0.063 0.937 43 H 0.105 0.895 44 H 0.225 0.775 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -18.979 15.698 -19.133 31.188 hybrid contribution 1.493 0.526 -0.573 1.683 sum -17.486 16.225 -19.705 30.940 Atomic orbital electron populations 1.20312 0.87997 1.02851 1.02836 1.24603 1.00057 0.96410 1.09552 1.19932 0.92757 0.99171 1.05664 1.19987 0.96364 0.95458 1.04369 1.23812 0.97184 0.96697 1.10608 1.19808 0.92989 0.99047 0.94439 0.86801 1.21862 1.02653 0.99759 0.95913 1.20428 0.82443 0.80045 0.87424 1.90774 1.42019 1.60435 1.46394 1.45870 1.14001 1.52186 1.25873 1.21295 0.96344 0.95139 0.87571 1.22077 0.95829 0.98061 0.92069 1.59934 1.04316 1.28114 1.37509 1.21669 0.90873 0.98388 0.97087 1.19775 0.84354 0.84823 0.88549 1.90538 1.41324 1.65249 1.49464 1.41858 1.11301 1.44151 1.22680 1.19772 0.98615 1.24637 0.99880 0.87818 1.25262 0.95115 0.98382 0.99155 1.69617 1.03355 1.44726 1.36620 0.85795 0.78529 0.79025 0.80976 1.19184 1.20770 1.20724 1.84289 0.95413 1.08414 1.71154 0.91529 0.90606 0.90688 0.84625 0.84592 0.91789 0.90767 0.91208 0.76642 0.90136 0.91318 0.94934 0.90465 0.82791 0.93715 0.89467 0.77462 0.91920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.51 10.38 36.01 0.37 -0.14 16 2 C -0.19 -1.69 6.51 -36.00 -0.23 -1.92 16 3 C -0.14 -1.25 10.05 -41.21 -0.41 -1.66 16 4 C -0.13 -1.15 10.01 -41.21 -0.41 -1.56 16 5 C -0.16 -1.57 4.60 -36.00 -0.17 -1.74 16 6 C -0.04 -0.30 3.10 -92.92 -0.29 -0.59 16 7 H 0.11 0.62 8.09 -51.93 -0.42 0.20 16 8 C -0.14 -0.81 9.01 37.16 0.33 -0.47 16 9 C 0.51 5.49 7.12 -10.99 -0.08 5.41 16 10 O -0.52 -7.87 15.25 5.56 0.08 -7.78 16 11 N -0.73 -6.41 5.45 -60.29 -0.33 -6.73 16 12 C 0.12 1.35 5.93 -4.04 -0.02 1.32 16 13 C 0.05 0.55 5.80 -3.82 -0.02 0.53 16 14 N -0.67 -10.42 6.13 -115.06 -0.70 -11.13 16 15 C 0.05 0.89 6.17 -4.97 -0.03 0.86 16 16 C 0.44 10.32 7.82 -10.99 -0.09 10.23 16 17 O -0.58 -15.87 15.78 5.55 0.09 -15.78 16 18 N -0.56 -14.19 5.29 -10.96 -0.06 -14.24 16 19 C -0.30 -8.36 9.68 -14.93 -0.14 -8.50 16 20 H 0.10 3.05 7.16 -52.48 -0.38 2.67 16 21 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 22 N -0.90 -24.39 13.05 55.50 0.72 -23.66 16 23 Si 0.93 21.02 29.55 -169.99 -5.02 16.00 16 24 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 25 H -0.28 -6.26 7.11 56.52 0.40 -5.85 16 26 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 27 S 0.14 1.44 22.16 -107.50 -2.38 -0.94 16 28 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.14 0.89 8.06 -52.48 -0.42 0.47 16 32 H 0.14 0.91 8.06 -52.49 -0.42 0.49 16 33 H 0.06 0.43 8.00 -51.93 -0.42 0.02 16 34 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.07 0.27 7.57 -51.93 -0.39 -0.12 16 36 H 0.40 2.26 7.89 -40.82 -0.32 1.93 16 37 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 38 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 40 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.35 5.75 8.43 -39.30 -0.33 5.42 16 42 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 43 H 0.09 1.36 8.14 -51.93 -0.42 0.93 16 44 H 0.39 9.37 7.90 -40.82 -0.32 9.05 16 45 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 LS Contribution 396.55 15.07 5.98 5.98 Total: -1.00 -34.68 396.55 -9.70 -44.38 By element: Atomic # 1 Polarization: 18.43 SS G_CDS: -6.79 Total: 11.64 kcal Atomic # 6 Polarization: 3.57 SS G_CDS: -1.29 Total: 2.28 kcal Atomic # 7 Polarization: -55.40 SS G_CDS: -0.37 Total: -55.77 kcal Atomic # 8 Polarization: -23.74 SS G_CDS: 0.17 Total: -23.57 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Atomic # 16 Polarization: 1.44 SS G_CDS: -2.38 Total: -0.94 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -34.68 -9.70 -44.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001147771562.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.845 kcal (2) G-P(sol) polarization free energy of solvation -34.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds