Wall clock time and date at job start Sat Apr 11 2020 05:40:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.33390 * 125.20482 * 2 1 4 4 C 1.38417 * 114.92005 * 179.75002 * 3 2 1 5 5 C 1.33390 * 114.92073 * 0.43240 * 4 3 2 6 6 C 1.50706 * 125.20186 * 179.86308 * 5 4 3 7 7 H 1.09000 * 109.47318 * 359.71040 * 6 5 4 8 8 C 1.53002 * 109.46925 * 239.71807 * 6 5 4 9 9 C 1.50698 * 109.47294 * 119.72000 * 6 5 4 10 10 O 1.21282 * 120.00025 * 359.97438 * 9 6 5 11 11 N 1.34776 * 120.00035 * 180.02562 * 9 6 5 12 12 C 1.46496 * 119.99846 * 179.97438 * 11 9 6 13 13 C 1.53006 * 109.46995 * 179.97438 * 12 11 9 14 14 N 1.46901 * 109.46954 * 180.02562 * 13 12 11 15 15 C 1.46903 * 110.99813 * 179.97438 * 14 13 12 16 16 C 1.50701 * 109.47245 * 179.97438 * 15 14 13 17 17 O 1.21294 * 119.99602 * 359.97438 * 16 15 14 18 18 N 1.34769 * 119.99843 * 180.02562 * 16 15 14 19 19 C 1.37099 * 119.99914 * 180.02562 * 18 16 15 20 20 H 1.08003 * 119.99797 * 359.97438 * 19 18 16 21 21 C 1.38952 * 120.00057 * 179.97438 * 19 18 16 22 22 N 1.31403 * 119.99980 * 0.02562 * 21 19 18 23 23 Si 1.86805 * 119.99729 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47291 * 0.02562 * 23 21 19 25 25 H 1.48498 * 109.46901 * 120.00231 * 23 21 19 26 26 H 1.48498 * 109.47023 * 240.00195 * 23 21 19 27 27 S 1.75884 * 109.59487 * 359.59438 * 5 4 3 28 28 H 1.08994 * 109.47481 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47282 * 300.00235 * 1 2 3 30 30 H 1.09004 * 109.46879 * 59.99574 * 1 2 3 31 31 H 1.08005 * 122.53660 * 359.97438 * 3 2 1 32 32 H 1.07999 * 122.53924 * 180.27565 * 4 3 2 33 33 H 1.09004 * 109.46930 * 299.99901 * 8 6 5 34 34 H 1.09004 * 109.47059 * 59.99503 * 8 6 5 35 35 H 1.08992 * 109.47060 * 179.97438 * 8 6 5 36 36 H 0.97002 * 119.99767 * 359.97438 * 11 9 6 37 37 H 1.08998 * 109.47703 * 299.99475 * 12 11 9 38 38 H 1.09001 * 109.47464 * 60.00214 * 12 11 9 39 39 H 1.09001 * 109.47002 * 299.99701 * 13 12 11 40 40 H 1.08992 * 109.47533 * 59.99650 * 13 12 11 41 41 H 1.00893 * 111.00875 * 56.04252 * 14 13 12 42 42 H 1.08993 * 109.46917 * 299.99686 * 15 14 13 43 43 H 1.08998 * 109.46940 * 59.99328 * 15 14 13 44 44 H 0.97003 * 120.00419 * 359.97438 * 18 16 15 45 45 H 0.97003 * 119.99598 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2760 1.0899 0.0000 4 6 3.6379 0.8428 0.0055 5 6 3.9750 -0.4478 0.0008 6 6 5.3860 -0.9772 0.0022 7 1 6.0872 -0.1427 0.0024 8 6 5.6112 -1.8320 -1.2466 9 6 5.6058 -1.8184 1.2330 10 8 4.7054 -1.9726 2.0309 11 7 6.8031 -2.3987 1.4478 12 6 7.0168 -3.2160 2.6446 13 6 8.4494 -3.7536 2.6459 14 7 8.6635 -4.5737 3.8457 15 6 10.0313 -5.1084 3.8806 16 6 10.2133 -5.9419 5.1230 17 8 9.2941 -6.0767 5.9028 18 7 11.3976 -6.5365 5.3679 19 6 11.5631 -7.2952 6.4978 20 1 10.7444 -7.4159 7.1918 21 6 12.7840 -7.9087 6.7501 22 7 13.7802 -7.7614 5.9060 23 14 13.0095 -8.9418 8.2901 24 1 11.7462 -8.9493 9.0706 25 1 13.3618 -10.3323 7.9060 26 1 14.0997 -8.3655 9.1174 27 16 2.5209 -1.4372 0.0005 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 1.8669 2.0895 -0.0004 32 1 4.3720 1.6349 0.0105 33 1 4.9100 -2.6666 -1.2469 34 1 5.4522 -1.2235 -2.1370 35 1 6.6318 -2.2145 -1.2459 36 1 7.5233 -2.2751 0.8098 37 1 6.8563 -2.6069 3.5341 38 1 6.3160 -4.0508 2.6445 39 1 8.6096 -4.3629 1.7565 40 1 9.1506 -2.9192 2.6458 41 1 7.9835 -5.3169 3.9019 42 1 10.2021 -5.7269 2.9996 43 1 10.7437 -4.2836 3.8892 44 1 12.1328 -6.4284 4.7444 45 1 14.6326 -8.1894 6.0824 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001147771562.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:22 Heat of formation + Delta-G solvation = -74.199156 kcal Electronic energy + Delta-G solvation = -25214.710876 eV Core-core repulsion = 21357.336445 eV Total energy + Delta-G solvation = -3857.374431 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.04271 -40.15917 -38.83339 -37.48429 -36.00360 -35.41697 -35.00691 -33.27293 -32.04539 -30.41490 -27.73017 -27.43819 -25.84101 -24.72365 -23.72307 -23.03645 -21.37652 -21.10011 -19.93444 -19.86801 -18.60064 -17.74857 -17.40174 -17.23191 -16.94742 -16.56116 -16.36480 -16.11198 -15.80867 -15.41824 -15.13414 -14.97646 -14.71143 -14.59855 -14.26515 -14.07422 -13.92489 -13.56053 -13.51657 -13.32776 -13.29222 -12.95748 -12.89038 -12.72977 -12.58005 -12.51201 -12.41004 -12.34619 -12.22290 -12.11939 -11.52001 -11.51774 -10.91547 -10.37012 -10.15260 -10.01785 -9.38501 -9.34737 -9.29632 -8.47466 -5.95963 0.07234 0.73774 1.15496 1.36428 1.42136 1.56048 1.58596 1.77367 2.04734 2.11061 2.30833 3.02893 3.20108 3.49907 3.55633 3.78133 3.92905 4.01314 4.05459 4.12560 4.30475 4.31820 4.41537 4.46267 4.50702 4.61018 4.63622 4.73260 4.76862 4.81108 4.85260 4.91084 4.95366 5.08662 5.20204 5.27392 5.35036 5.37342 5.41108 5.66391 5.84618 6.07106 6.31447 6.51250 6.59899 7.12577 7.21746 7.55889 8.11705 8.70030 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.035263 B = 0.001453 C = 0.001420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.840674 B =19272.249953 C =19718.312445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.193 4.193 3 C -0.154 4.154 4 C -0.136 4.136 5 C -0.175 4.175 6 C -0.033 4.033 7 H 0.144 0.856 8 C -0.140 4.140 9 C 0.508 3.492 10 O -0.572 6.572 11 N -0.710 5.710 12 C 0.129 3.871 13 C 0.059 3.941 14 N -0.687 5.687 15 C 0.069 3.931 16 C 0.434 3.566 17 O -0.626 6.626 18 N -0.572 5.572 19 C -0.336 4.336 20 H 0.077 0.923 21 C -0.011 4.011 22 N -0.918 5.918 23 Si 0.992 3.008 24 H -0.275 1.275 25 H -0.270 1.270 26 H -0.270 1.270 27 S 0.084 5.916 28 H 0.065 0.935 29 H 0.083 0.917 30 H 0.092 0.908 31 H 0.157 0.843 32 H 0.159 0.841 33 H 0.046 0.954 34 H 0.087 0.913 35 H 0.092 0.908 36 H 0.419 0.581 37 H 0.055 0.945 38 H 0.053 0.947 39 H 0.058 0.942 40 H 0.095 0.905 41 H 0.345 0.655 42 H 0.074 0.926 43 H 0.110 0.890 44 H 0.398 0.602 45 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.530 18.340 -22.433 33.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.310 4.310 3 C -0.184 4.184 4 C -0.166 4.166 5 C -0.293 4.293 6 C -0.056 4.056 7 H 0.162 0.838 8 C -0.198 4.198 9 C 0.294 3.706 10 O -0.451 6.451 11 N -0.364 5.364 12 C 0.004 3.996 13 C -0.070 4.070 14 N -0.320 5.320 15 C -0.064 4.064 16 C 0.222 3.778 17 O -0.513 6.513 18 N -0.209 5.209 19 C -0.465 4.465 20 H 0.095 0.905 21 C -0.210 4.210 22 N -0.559 5.559 23 Si 0.816 3.184 24 H -0.200 1.200 25 H -0.195 1.195 26 H -0.196 1.196 27 S 0.349 5.651 28 H 0.084 0.916 29 H 0.101 0.899 30 H 0.111 0.889 31 H 0.174 0.826 32 H 0.177 0.823 33 H 0.065 0.935 34 H 0.106 0.894 35 H 0.111 0.889 36 H 0.256 0.744 37 H 0.074 0.926 38 H 0.071 0.929 39 H 0.076 0.924 40 H 0.113 0.887 41 H 0.164 0.836 42 H 0.091 0.909 43 H 0.128 0.872 44 H 0.232 0.768 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -17.709 17.026 -20.943 32.281 hybrid contribution 1.062 0.185 -0.051 1.079 sum -16.647 17.211 -20.993 31.844 Atomic orbital electron populations 1.20404 0.86418 1.03226 1.03987 1.24938 1.01169 0.95547 1.09378 1.20273 0.92912 1.00001 1.05185 1.20343 0.97045 0.95763 1.03441 1.24073 0.97408 0.96703 1.11116 1.19903 0.92642 0.99615 0.93457 0.83828 1.21878 1.03521 0.99105 0.95294 1.21058 0.82002 0.79747 0.87774 1.90757 1.43687 1.62283 1.48345 1.45674 1.14239 1.51113 1.25328 1.21024 0.96401 0.94467 0.87701 1.22073 0.95644 0.98126 0.91137 1.59903 1.03380 1.28176 1.40564 1.21524 0.92231 0.98365 0.94237 1.20957 0.82953 0.84016 0.89872 1.90507 1.42575 1.66598 1.51594 1.41913 1.12210 1.44477 1.22302 1.19702 0.98712 1.26966 1.01150 0.90500 1.26001 0.94374 0.98834 1.01836 1.69665 1.03670 1.44938 1.37660 0.84890 0.78160 0.77915 0.77480 1.20000 1.19512 1.19566 1.84451 0.97610 1.10675 1.72373 0.91602 0.89857 0.88947 0.82557 0.82317 0.93512 0.89426 0.88930 0.74355 0.92616 0.92868 0.92352 0.88694 0.83640 0.90862 0.87234 0.76821 0.91262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.97 10.38 71.24 0.74 -0.24 16 2 C -0.19 -3.39 6.51 24.59 0.16 -3.23 16 3 C -0.15 -2.46 10.05 21.21 0.21 -2.24 16 4 C -0.14 -2.17 10.01 21.21 0.21 -1.96 16 5 C -0.18 -3.20 4.60 24.59 0.11 -3.09 16 6 C -0.03 -0.45 3.10 -12.28 -0.04 -0.49 16 7 H 0.14 1.07 8.09 -2.39 -0.02 1.05 16 8 C -0.14 -1.27 9.01 71.98 0.65 -0.62 16 9 C 0.51 10.49 7.12 87.66 0.62 11.12 16 10 O -0.57 -17.77 15.25 -3.04 -0.05 -17.82 16 11 N -0.71 -11.27 5.45 -463.06 -2.52 -13.79 16 12 C 0.13 2.79 5.93 86.38 0.51 3.31 16 13 C 0.06 1.16 5.80 86.31 0.50 1.66 16 14 N -0.69 -20.69 6.13 -517.93 -3.17 -23.86 16 15 C 0.07 2.21 6.17 85.56 0.53 2.73 16 16 C 0.43 20.47 7.82 87.66 0.69 21.15 16 17 O -0.63 -35.07 15.78 -3.07 -0.05 -35.12 16 18 N -0.57 -29.02 5.29 -306.99 -1.62 -30.64 16 19 C -0.34 -19.10 9.68 84.04 0.81 -18.29 16 20 H 0.08 4.71 7.16 -2.91 -0.02 4.69 16 21 C -0.01 -0.56 5.50 84.93 0.47 -0.09 16 22 N -0.92 -48.99 13.05 21.66 0.28 -48.71 16 23 Si 0.99 42.91 29.55 68.60 2.03 44.94 16 24 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 25 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 26 H -0.27 -11.19 7.11 99.48 0.71 -10.49 16 27 S 0.08 1.77 22.16 -56.49 -1.25 0.51 16 28 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.09 0.76 8.14 -2.38 -0.02 0.74 16 31 H 0.16 1.74 8.06 -2.91 -0.02 1.72 16 32 H 0.16 1.70 8.06 -2.91 -0.02 1.68 16 33 H 0.05 0.60 8.00 -2.38 -0.02 0.58 16 34 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 35 H 0.09 0.40 7.57 -2.39 -0.02 0.38 16 36 H 0.42 3.34 7.89 -92.71 -0.73 2.61 16 37 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 38 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 39 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 40 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 41 H 0.35 11.22 8.43 -89.70 -0.76 10.47 16 42 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 43 H 0.11 3.08 8.14 -2.39 -0.02 3.06 16 44 H 0.40 18.91 7.90 -92.71 -0.73 18.18 16 45 H 0.28 13.82 8.31 -92.71 -0.77 13.05 16 Total: -1.00 -78.20 396.55 -1.36 -79.56 By element: Atomic # 1 Polarization: 36.40 SS G_CDS: -1.19 Total: 35.21 kcal Atomic # 6 Polarization: 3.54 SS G_CDS: 6.18 Total: 9.72 kcal Atomic # 7 Polarization: -109.97 SS G_CDS: -7.04 Total: -117.01 kcal Atomic # 8 Polarization: -52.84 SS G_CDS: -0.09 Total: -52.94 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 2.03 Total: 44.94 kcal Atomic # 16 Polarization: 1.77 SS G_CDS: -1.25 Total: 0.51 kcal Total: -78.20 -1.36 -79.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001147771562.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.365 kcal (2) G-P(sol) polarization free energy of solvation -78.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds