Wall clock time and date at job start Sat Apr 11 2020 05:40:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86806 * 119.99733 * 2 1 4 4 H 1.48495 * 109.46984 * 270.00135 * 3 2 1 5 5 H 1.48500 * 109.47383 * 30.00386 * 3 2 1 6 6 H 1.48507 * 109.46901 * 150.00200 * 3 2 1 7 7 C 1.38809 * 120.00006 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99646 * 160.73043 * 7 2 1 9 9 N 1.36935 * 119.99900 * 340.73917 * 7 2 1 10 10 C 1.43422 * 120.63373 * 155.63721 * 9 7 2 11 11 C 1.55327 * 116.24183 * 269.37250 * 10 9 7 12 12 C 1.55201 * 108.87172 * 319.46207 * 11 10 9 13 13 O 1.39800 * 110.45614 * 322.14299 * 12 11 10 14 14 C 1.42381 * 108.54136 * 101.31627 * 13 12 11 15 15 H 1.09001 * 108.61925 * 28.31617 * 14 13 12 16 16 C 1.53003 * 108.61893 * 146.22783 * 14 13 12 17 17 N 1.46494 * 109.46992 * 302.05662 * 16 14 13 18 18 C 1.34782 * 119.99630 * 180.02562 * 17 16 14 19 19 O 1.21280 * 119.99960 * 359.97438 * 18 17 16 20 20 C 1.50702 * 119.99874 * 179.97438 * 18 17 16 21 21 C 1.52993 * 109.47262 * 179.97438 * 20 18 17 22 22 C 1.50700 * 109.47220 * 180.02562 * 21 20 18 23 23 C 1.33639 * 126.04040 * 90.00507 * 22 21 20 24 24 N 1.31782 * 114.49864 * 179.76791 * 23 22 21 25 25 C 1.29019 * 117.12549 * 0.22771 * 24 23 22 26 26 S 1.70983 * 110.17029 * 0.02562 * 25 24 23 27 27 C 1.46925 * 113.68580 * 267.27356 * 14 13 12 28 28 H 0.96999 * 119.99927 * 359.97438 * 1 2 3 29 29 H 1.09001 * 108.13168 * 31.12823 * 10 9 7 30 30 H 1.09000 * 108.12545 * 147.61200 * 10 9 7 31 31 H 1.09002 * 109.57571 * 79.27703 * 11 10 9 32 32 H 1.09002 * 109.57241 * 199.64940 * 11 10 9 33 33 H 1.08997 * 109.25238 * 82.42219 * 12 11 10 34 34 H 1.08996 * 109.25785 * 201.86294 * 12 11 10 35 35 H 1.09005 * 109.46481 * 182.05543 * 16 14 13 36 36 H 1.09001 * 109.47191 * 62.06200 * 16 14 13 37 37 H 0.96995 * 120.00574 * 359.97438 * 17 16 14 38 38 H 1.09002 * 109.46773 * 59.99859 * 20 18 17 39 39 H 1.08998 * 109.47105 * 299.99961 * 20 18 17 40 40 H 1.09007 * 109.47025 * 59.99886 * 21 20 18 41 41 H 1.09001 * 109.47126 * 300.00639 * 21 20 18 42 42 H 1.08001 * 122.74710 * 0.03148 * 23 22 21 43 43 H 1.08005 * 124.91616 * 180.02562 * 25 24 23 44 44 H 1.09002 * 109.98829 * 176.18811 * 27 14 13 45 45 H 1.09001 * 109.98651 * 297.46592 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4476 2.6527 0.7001 6 1 3.5478 1.4402 0.7000 7 6 2.0102 -1.2021 0.0005 8 1 3.0449 -1.2284 -0.3081 9 7 1.3830 -2.3546 0.3922 10 6 1.8492 -3.6318 -0.0644 11 6 1.2151 -4.1647 -1.3784 12 6 -0.3044 -3.8485 -1.3668 13 8 -0.8268 -4.0082 -0.0799 14 6 -0.9697 -2.7218 0.5135 15 1 -1.1312 -1.9896 -0.2776 16 6 -2.2007 -2.7370 1.4220 17 7 -3.3824 -3.1026 0.6371 18 6 -4.5892 -3.1796 1.2323 19 8 -4.6968 -2.9466 2.4176 20 6 -5.8050 -3.5551 0.4248 21 6 -7.0359 -3.5704 1.3332 22 6 -8.2515 -3.9465 0.5259 23 6 -8.7098 -5.1858 0.3256 24 7 -9.7970 -5.2532 -0.4161 25 6 -10.2787 -4.1402 -0.8563 26 16 -9.3176 -2.8301 -0.3237 27 6 0.1943 -2.3055 1.3075 28 1 -0.4850 0.8400 0.0004 29 1 2.9274 -3.5670 -0.2103 30 1 1.6625 -4.3622 0.7228 31 1 1.6829 -3.6770 -2.2336 32 1 1.3631 -5.2426 -1.4443 33 1 -0.4601 -2.8206 -1.6941 34 1 -0.8175 -4.5246 -2.0506 35 1 -2.3444 -1.7473 1.8556 36 1 -2.0546 -3.4654 2.2197 37 1 -3.2965 -3.2885 -0.3109 38 1 -5.6615 -4.5448 -0.0089 39 1 -5.9506 -2.8266 -0.3728 40 1 -7.1794 -2.5808 1.7673 41 1 -6.8899 -4.2991 2.1306 42 1 -8.2309 -6.0601 0.7413 43 1 -11.1613 -4.0491 -1.4721 44 1 0.0497 -1.2900 1.6764 45 1 0.3380 -2.9889 2.1445 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001150334419.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:35 Heat of formation + Delta-G solvation = -30.149970 kcal Electronic energy + Delta-G solvation = -27175.967367 eV Core-core repulsion = 23320.503052 eV Total energy + Delta-G solvation = -3855.464315 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 1.49 seconds Orbital eigenvalues (eV) -41.09755 -40.58661 -40.14034 -36.79405 -36.00016 -35.13274 -33.83930 -32.95174 -30.74936 -29.99049 -27.56389 -27.06432 -26.35905 -24.59966 -23.71596 -22.38369 -21.35678 -21.18052 -20.90505 -19.03061 -18.93982 -18.09413 -17.69089 -17.03663 -16.76212 -16.64149 -16.17350 -16.15875 -15.72600 -15.52949 -15.23284 -14.96981 -14.80519 -14.58505 -14.49064 -14.15798 -13.74700 -13.64210 -13.41928 -13.27773 -13.17406 -12.93866 -12.63385 -12.58140 -12.49445 -12.31109 -11.92377 -11.84380 -11.77234 -11.37320 -11.18485 -10.98271 -10.58783 -10.55624 -10.27903 -10.17712 -10.03242 -9.85749 -8.71109 -7.89558 -5.29783 -0.22998 0.44423 0.83526 1.46952 1.51725 1.58749 1.68082 1.87308 2.28328 2.52599 3.12722 3.28000 3.46981 3.52059 3.70500 3.96418 4.04902 4.14786 4.26105 4.32502 4.38387 4.41338 4.43468 4.50790 4.57779 4.64378 4.74973 4.79818 4.80163 4.98907 4.99866 5.07175 5.08825 5.19030 5.19343 5.23710 5.34908 5.41099 5.46210 5.53184 5.68613 6.36683 6.52008 6.60926 6.76181 7.11234 7.28217 7.83529 8.36370 9.16357 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.016916 B = 0.002300 C = 0.002168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1654.824230 B =12168.630707 C =12910.359380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.036 4.036 3 Si 0.958 3.042 4 H -0.288 1.288 5 H -0.293 1.293 6 H -0.280 1.280 7 C -0.263 4.263 8 H 0.062 0.938 9 N -0.601 5.601 10 C 0.154 3.846 11 C -0.165 4.165 12 C 0.068 3.932 13 O -0.366 6.366 14 C 0.080 3.920 15 H 0.085 0.915 16 C 0.133 3.867 17 N -0.709 5.709 18 C 0.508 3.492 19 O -0.588 6.588 20 C -0.124 4.124 21 C -0.021 4.021 22 C -0.220 4.220 23 C 0.022 3.978 24 N -0.502 5.502 25 C 0.016 3.984 26 S 0.141 5.859 27 C 0.144 3.856 28 H 0.251 0.749 29 H 0.030 0.970 30 H 0.034 0.966 31 H 0.053 0.947 32 H 0.078 0.922 33 H 0.037 0.963 34 H 0.087 0.913 35 H 0.060 0.940 36 H 0.056 0.944 37 H 0.411 0.589 38 H 0.118 0.882 39 H 0.111 0.889 40 H 0.076 0.924 41 H 0.090 0.910 42 H 0.185 0.815 43 H 0.227 0.773 44 H 0.078 0.922 45 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.009 -7.797 -4.020 19.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.233 4.233 3 Si 0.787 3.213 4 H -0.215 1.215 5 H -0.220 1.220 6 H -0.205 1.205 7 C -0.393 4.393 8 H 0.080 0.920 9 N -0.323 5.323 10 C 0.026 3.974 11 C -0.206 4.206 12 C -0.010 4.010 13 O -0.285 6.285 14 C 0.021 3.979 15 H 0.103 0.897 16 C 0.008 3.992 17 N -0.360 5.360 18 C 0.296 3.704 19 O -0.469 6.469 20 C -0.164 4.164 21 C -0.061 4.061 22 C -0.341 4.341 23 C -0.128 4.128 24 N -0.216 5.216 25 C -0.281 4.281 26 S 0.394 5.606 27 C 0.019 3.981 28 H 0.060 0.940 29 H 0.048 0.952 30 H 0.052 0.948 31 H 0.072 0.928 32 H 0.096 0.904 33 H 0.055 0.945 34 H 0.105 0.895 35 H 0.078 0.922 36 H 0.075 0.925 37 H 0.246 0.754 38 H 0.136 0.864 39 H 0.129 0.871 40 H 0.094 0.906 41 H 0.108 0.892 42 H 0.202 0.798 43 H 0.243 0.757 44 H 0.096 0.904 45 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -17.548 -7.102 -3.381 19.230 hybrid contribution 1.208 0.474 -0.157 1.307 sum -16.340 -6.628 -3.538 17.985 Atomic orbital electron populations 1.69987 1.05782 1.25682 1.54747 1.25461 0.96069 1.00463 1.01263 0.85432 0.78087 0.80464 0.77276 1.21461 1.21961 1.20549 1.19381 0.93640 0.86374 1.39903 0.92007 1.44217 1.34593 1.01888 1.51583 1.20485 0.95976 0.86744 0.94205 1.23498 0.96746 1.00604 0.99765 1.22429 0.93773 1.00170 0.84603 1.87550 1.83422 1.28135 1.29370 1.21743 0.93553 0.84716 0.97904 0.89733 1.21337 0.84161 0.99603 0.94130 1.45860 1.06906 1.69542 1.13668 1.21215 0.85168 0.76094 0.87910 1.90678 1.86567 1.51897 1.17806 1.21664 0.90187 1.05764 0.98819 1.19648 0.87349 1.03449 0.95642 1.25995 1.04151 0.96242 1.07707 1.22020 0.93672 0.97819 0.99304 1.66376 1.12283 1.30274 1.12666 1.28918 1.05207 0.90008 1.03987 1.84138 1.19840 1.12713 1.43943 1.20677 0.86326 1.00070 0.91041 0.93974 0.95200 0.94753 0.92802 0.90353 0.94486 0.89460 0.92187 0.92518 0.75358 0.86380 0.87127 0.90579 0.89189 0.79816 0.75710 0.90401 0.95871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -47.70 9.56 21.65 0.21 -47.49 16 2 C -0.04 -1.87 4.92 84.86 0.42 -1.45 16 3 Si 0.96 42.71 29.60 68.60 2.03 44.74 16 4 H -0.29 -12.72 7.11 99.48 0.71 -12.02 16 5 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 6 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 7 C -0.26 -13.64 9.62 84.03 0.81 -12.83 16 8 H 0.06 3.22 7.88 -2.91 -0.02 3.19 16 9 N -0.60 -28.52 2.61 -706.01 -1.84 -30.36 16 10 C 0.15 6.27 5.32 87.75 0.47 6.74 16 11 C -0.17 -5.70 6.75 32.15 0.22 -5.48 16 12 C 0.07 2.32 6.38 72.74 0.46 2.79 16 13 O -0.37 -13.30 9.44 -138.82 -1.31 -14.61 16 14 C 0.08 3.15 1.98 28.71 0.06 3.20 16 15 H 0.08 3.79 5.23 -2.39 -0.01 3.78 16 16 C 0.13 4.77 5.25 86.38 0.45 5.23 16 17 N -0.71 -20.65 5.41 -463.05 -2.51 -23.15 16 18 C 0.51 14.19 7.83 87.66 0.69 14.88 16 19 O -0.59 -21.16 15.98 -3.03 -0.05 -21.20 16 20 C -0.12 -2.25 5.68 29.85 0.17 -2.09 16 21 C -0.02 -0.38 5.04 29.85 0.15 -0.23 16 22 C -0.22 -3.70 5.85 24.64 0.14 -3.56 16 23 C 0.02 0.40 11.25 83.66 0.94 1.34 16 24 N -0.50 -9.60 10.54 -203.74 -2.15 -11.75 16 25 C 0.02 0.22 12.23 130.66 1.60 1.81 16 26 S 0.14 1.96 23.22 -56.49 -1.31 0.65 16 27 C 0.14 6.48 4.71 83.79 0.39 6.88 16 28 H 0.25 12.90 8.31 -92.71 -0.77 12.13 16 29 H 0.03 1.21 7.96 -2.39 -0.02 1.19 16 30 H 0.03 1.36 7.98 -2.39 -0.02 1.34 16 31 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 32 H 0.08 2.27 8.14 -2.39 -0.02 2.26 16 33 H 0.04 1.48 6.66 -2.39 -0.02 1.46 16 34 H 0.09 2.39 8.14 -2.39 -0.02 2.37 16 35 H 0.06 2.37 8.14 -2.38 -0.02 2.35 16 36 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 37 H 0.41 10.31 8.26 -92.71 -0.77 9.55 16 38 H 0.12 1.69 8.14 -2.39 -0.02 1.67 16 39 H 0.11 1.69 8.14 -2.39 -0.02 1.67 16 40 H 0.08 1.56 8.10 -2.38 -0.02 1.54 16 41 H 0.09 1.74 8.10 -2.39 -0.02 1.72 16 42 H 0.18 2.71 8.06 -2.91 -0.02 2.69 16 43 H 0.23 1.48 8.06 -2.91 -0.02 1.46 16 44 H 0.08 3.92 6.03 -2.39 -0.01 3.91 16 45 H 0.02 1.01 8.14 -2.39 -0.02 0.99 16 Total: -1.00 -63.18 376.27 0.27 -62.91 By element: Atomic # 1 Polarization: 22.80 SS G_CDS: 0.24 Total: 23.04 kcal Atomic # 6 Polarization: 10.26 SS G_CDS: 6.97 Total: 17.22 kcal Atomic # 7 Polarization: -106.46 SS G_CDS: -6.29 Total: -112.75 kcal Atomic # 8 Polarization: -34.45 SS G_CDS: -1.36 Total: -35.81 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 2.03 Total: 44.74 kcal Atomic # 16 Polarization: 1.96 SS G_CDS: -1.31 Total: 0.65 kcal Total: -63.18 0.27 -62.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001150334419.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.759 kcal (2) G-P(sol) polarization free energy of solvation -63.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.49 seconds