Wall clock time and date at job start Sat Apr 11 2020 05:40:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86800 * 119.99827 * 2 1 4 4 H 1.48494 * 109.46988 * 239.99568 * 3 2 1 5 5 H 1.48498 * 109.47339 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47196 * 119.99905 * 3 2 1 7 7 C 1.38948 * 119.99943 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99991 * 180.02562 * 7 2 1 9 9 N 1.37098 * 120.00263 * 0.02562 * 7 2 1 10 10 C 1.34774 * 120.00181 * 179.97438 * 9 7 2 11 11 O 1.21289 * 119.99861 * 359.97438 * 10 9 7 12 12 C 1.50703 * 119.99996 * 179.97438 * 10 9 7 13 13 N 1.46908 * 109.46848 * 179.97438 * 12 10 9 14 14 C 1.46898 * 110.99422 * 180.02562 * 13 12 10 15 15 C 1.53005 * 109.46739 * 180.02562 * 14 13 12 16 16 N 1.46506 * 109.46992 * 180.02562 * 15 14 13 17 17 C 1.34779 * 119.99737 * 179.97438 * 16 15 14 18 18 O 1.21283 * 119.99998 * 359.97438 * 17 16 15 19 19 C 1.50700 * 119.99838 * 179.97438 * 17 16 15 20 20 O 1.42895 * 109.46892 * 179.97438 * 19 17 16 21 21 C 1.35951 * 116.99758 * 179.97438 * 20 19 17 22 22 C 1.38708 * 120.03040 * 0.28885 * 21 20 19 23 23 C 1.38147 * 119.96935 * 180.25012 * 22 21 20 24 24 C 1.38455 * 120.02958 * 359.46222 * 23 22 21 25 25 F 1.35101 * 119.97206 * 180.29906 * 24 23 22 26 26 C 1.38452 * 120.06193 * 0.28172 * 24 23 22 27 27 C 1.38156 * 120.03063 * 359.97438 * 26 24 23 28 28 H 0.96993 * 120.00323 * 0.02562 * 1 2 3 29 29 H 0.97003 * 119.99606 * 359.97438 * 9 7 2 30 30 H 1.09000 * 109.46989 * 60.00406 * 12 10 9 31 31 H 1.08996 * 109.47044 * 299.99791 * 12 10 9 32 32 H 1.00897 * 110.99991 * 303.94881 * 13 12 10 33 33 H 1.08997 * 109.47502 * 60.00283 * 14 13 12 34 34 H 1.08995 * 109.47335 * 299.99834 * 14 13 12 35 35 H 1.08997 * 109.47025 * 59.99828 * 15 14 13 36 36 H 1.09003 * 109.46790 * 299.99631 * 15 14 13 37 37 H 0.96993 * 120.00024 * 359.97438 * 16 15 14 38 38 H 1.09005 * 109.46403 * 60.00348 * 19 17 16 39 39 H 1.08995 * 109.47035 * 300.00415 * 19 17 16 40 40 H 1.07998 * 120.01328 * 0.02562 * 22 21 20 41 41 H 1.08002 * 119.98838 * 179.74746 * 23 22 21 42 42 H 1.07997 * 119.98751 * 179.97438 * 26 24 23 43 43 H 1.07999 * 120.02057 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1019 1.6964 -1.2124 5 1 1.2831 2.7465 -0.0006 6 1 3.1019 1.6965 1.2125 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3234 -2.3907 0.0005 10 6 1.9973 -3.5578 0.0005 11 8 3.2102 -3.5578 0.0001 12 6 1.2438 -4.8630 0.0011 13 7 2.1985 -5.9795 0.0004 14 6 1.4982 -7.2708 0.0003 15 6 2.5231 -8.4068 0.0002 16 7 1.8247 -9.6947 -0.0005 17 6 2.5295 -10.8435 -0.0013 18 8 3.7419 -10.8111 -0.0018 19 6 1.8111 -12.1682 -0.0014 20 8 2.7684 -13.2291 -0.0028 21 6 2.2825 -14.4988 -0.0026 22 6 0.9128 -14.7179 -0.0070 23 6 0.4204 -16.0087 -0.0016 24 6 1.2934 -17.0833 -0.0029 25 9 0.8106 -18.3451 -0.0036 26 6 2.6608 -16.8661 -0.0038 27 6 3.1560 -15.5763 -0.0039 28 1 -0.4850 0.8400 -0.0004 29 1 0.3534 -2.3906 0.0005 30 1 0.6169 -4.9209 -0.8886 31 1 0.6176 -4.9205 0.8914 32 1 2.8327 -5.9125 -0.7815 33 1 0.8729 -7.3450 -0.8894 34 1 0.8737 -7.3455 0.8905 35 1 3.1480 -8.3324 0.8901 36 1 3.1479 -8.3323 -0.8899 37 1 0.8551 -9.7206 -0.0004 38 1 1.1859 -12.2423 -0.8912 39 1 1.1867 -12.2429 0.8888 40 1 0.2317 -13.8798 -0.0111 41 1 -0.6460 -16.1796 -0.0009 42 1 3.3406 -17.7052 -0.0044 43 1 4.2227 -15.4071 -0.0051 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001150685729.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:39 Heat of formation + Delta-G solvation = -149.768638 kcal Electronic energy + Delta-G solvation = -26474.012376 eV Core-core repulsion = 22047.147829 eV Total energy + Delta-G solvation = -4426.864546 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.143 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.82576 -41.47103 -40.43981 -40.11952 -38.17787 -37.41135 -35.99662 -35.25728 -33.26346 -32.35109 -31.47443 -30.45492 -28.96323 -27.39228 -25.52443 -24.18462 -23.36060 -22.99189 -21.66537 -21.08914 -19.91395 -19.49341 -18.59664 -18.38884 -17.74942 -17.54554 -17.26357 -17.11884 -16.91166 -16.55069 -16.46946 -15.97024 -15.89763 -15.66097 -15.35875 -15.22159 -14.82839 -14.69639 -14.46322 -14.18809 -14.02446 -13.98587 -13.51412 -13.36159 -13.33327 -13.27358 -12.92620 -12.58502 -12.43043 -12.39394 -12.11955 -11.95166 -11.90670 -11.49846 -11.05163 -10.35586 -10.22192 -10.19397 -10.00815 -9.36412 -9.15936 -8.46258 -5.94795 0.14881 0.17454 1.40388 1.42372 1.44134 1.47007 1.53299 2.06454 2.29491 2.51842 2.54918 3.04474 3.21433 3.32590 3.49030 3.63156 3.76522 3.81076 3.90787 4.02922 4.09365 4.16552 4.17881 4.31913 4.33264 4.48196 4.52473 4.56406 4.63609 4.89852 4.90637 4.95736 5.10604 5.14145 5.18688 5.27688 5.41558 5.65770 5.85951 6.08258 6.23014 6.33635 6.48322 6.61119 7.13535 7.15029 7.57242 8.13113 8.70738 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.052947 B = 0.001196 C = 0.001171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 528.704223 B =23404.827919 C =23900.452222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.009 4.009 3 Si 0.990 3.010 4 H -0.272 1.272 5 H -0.270 1.270 6 H -0.273 1.273 7 C -0.337 4.337 8 H 0.077 0.923 9 N -0.571 5.571 10 C 0.433 3.567 11 O -0.626 6.626 12 C 0.069 3.931 13 N -0.688 5.688 14 C 0.059 3.941 15 C 0.128 3.872 16 N -0.704 5.704 17 C 0.510 3.490 18 O -0.576 6.576 19 C 0.041 3.959 20 O -0.317 6.317 21 C 0.109 3.891 22 C -0.176 4.176 23 C -0.111 4.111 24 C 0.038 3.962 25 F -0.151 7.151 26 C -0.113 4.113 27 C -0.135 4.135 28 H 0.278 0.722 29 H 0.398 0.602 30 H 0.074 0.926 31 H 0.110 0.890 32 H 0.345 0.655 33 H 0.061 0.939 34 H 0.096 0.904 35 H 0.058 0.942 36 H 0.056 0.944 37 H 0.424 0.576 38 H 0.131 0.869 39 H 0.131 0.869 40 H 0.172 0.828 41 H 0.160 0.840 42 H 0.156 0.844 43 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.914 -32.517 -1.003 33.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.209 4.209 3 Si 0.814 3.186 4 H -0.198 1.198 5 H -0.194 1.194 6 H -0.199 1.199 7 C -0.467 4.467 8 H 0.095 0.905 9 N -0.209 5.209 10 C 0.221 3.779 11 O -0.513 6.513 12 C -0.063 4.063 13 N -0.321 5.321 14 C -0.070 4.070 15 C 0.003 3.997 16 N -0.359 5.359 17 C 0.296 3.704 18 O -0.454 6.454 19 C -0.037 4.037 20 O -0.230 6.230 21 C 0.064 3.936 22 C -0.194 4.194 23 C -0.129 4.129 24 C 0.019 3.981 25 F -0.129 7.129 26 C -0.132 4.132 27 C -0.154 4.154 28 H 0.087 0.913 29 H 0.232 0.768 30 H 0.092 0.908 31 H 0.128 0.872 32 H 0.164 0.836 33 H 0.079 0.921 34 H 0.115 0.885 35 H 0.076 0.924 36 H 0.075 0.925 37 H 0.262 0.738 38 H 0.149 0.851 39 H 0.149 0.851 40 H 0.189 0.811 41 H 0.178 0.822 42 H 0.174 0.826 43 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -6.140 -32.288 -0.321 32.868 hybrid contribution -0.700 0.771 -0.859 1.349 sum -6.840 -31.517 -1.180 32.273 Atomic orbital electron populations 1.69651 1.06725 1.29367 1.50183 1.25982 0.96517 1.02243 0.96197 0.85028 0.77820 0.76844 0.78899 1.19774 1.19394 1.19859 1.19629 0.92710 0.84178 1.50151 0.90484 1.41903 1.09356 1.04623 1.64982 1.20987 0.88292 0.86371 0.82240 1.90506 1.16082 1.88005 1.56704 1.21521 0.93694 0.87407 1.03683 1.59901 1.19465 1.00965 1.51780 1.22080 0.95161 0.86621 1.03179 1.21072 0.95074 0.81560 1.01969 1.45478 1.11414 1.04183 1.74841 1.20671 0.87511 0.86370 0.75867 1.90779 1.16403 1.88065 1.50179 1.22727 0.90925 0.82607 1.07402 1.86151 1.35671 1.12382 1.88816 1.19256 0.93140 0.83830 0.97418 1.21436 0.93553 0.98731 1.05723 1.21240 1.01322 0.90888 0.99480 1.17894 0.92916 0.79418 1.07884 1.91477 1.88740 1.38240 1.94486 1.21136 0.93959 0.97833 1.00259 1.20480 1.00825 0.89745 1.04343 0.91265 0.76823 0.90815 0.87187 0.83598 0.92132 0.88533 0.92365 0.92547 0.73811 0.85099 0.85127 0.81061 0.82200 0.82621 0.83906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.51 13.05 21.66 0.28 -48.23 16 2 C -0.01 -0.49 5.50 84.93 0.47 -0.02 16 3 Si 0.99 42.43 29.55 68.60 2.03 44.46 16 4 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 5 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 6 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 7 C -0.34 -18.94 9.68 84.04 0.81 -18.13 16 8 H 0.08 4.64 7.16 -2.91 -0.02 4.62 16 9 N -0.57 -28.51 5.29 -306.99 -1.62 -30.13 16 10 C 0.43 19.97 7.82 87.66 0.69 20.66 16 11 O -0.63 -34.44 15.78 -3.06 -0.05 -34.49 16 12 C 0.07 2.13 6.17 85.56 0.53 2.65 16 13 N -0.69 -19.55 6.13 -517.92 -3.17 -22.72 16 14 C 0.06 1.01 5.80 86.31 0.50 1.51 16 15 C 0.13 2.45 5.93 86.38 0.51 2.96 16 16 N -0.70 -8.71 5.56 -463.03 -2.57 -11.28 16 17 C 0.51 9.05 7.91 87.66 0.69 9.75 16 18 O -0.58 -17.55 16.50 16.00 0.26 -17.29 16 19 C 0.04 0.37 5.22 71.24 0.37 0.74 16 20 O -0.32 -5.43 9.67 -73.96 -0.72 -6.15 16 21 C 0.11 1.48 6.69 22.50 0.15 1.63 16 22 C -0.18 -1.43 9.04 22.36 0.20 -1.22 16 23 C -0.11 -1.02 10.02 22.30 0.22 -0.80 16 24 C 0.04 0.50 7.30 22.37 0.16 0.66 16 25 F -0.15 -2.32 17.27 44.97 0.78 -1.54 16 26 C -0.11 -1.38 10.02 22.30 0.22 -1.16 16 27 C -0.14 -1.87 9.99 22.36 0.22 -1.65 16 28 H 0.28 13.77 8.31 -92.71 -0.77 13.00 16 29 H 0.40 18.57 7.90 -92.71 -0.73 17.84 16 30 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 31 H 0.11 2.93 8.14 -2.39 -0.02 2.91 16 32 H 0.35 10.66 8.43 -89.70 -0.76 9.90 16 33 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 36 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 37 H 0.42 1.43 8.47 -92.71 -0.79 0.65 16 38 H 0.13 0.24 7.65 -2.38 -0.02 0.22 16 39 H 0.13 0.26 7.67 -2.39 -0.02 0.25 16 40 H 0.17 0.13 6.30 -2.91 -0.02 0.11 16 41 H 0.16 0.73 8.06 -2.91 -0.02 0.71 16 42 H 0.16 1.32 8.06 -2.91 -0.02 1.30 16 43 H 0.14 1.87 8.06 -2.91 -0.02 1.85 16 Total: -1.00 -81.53 382.09 -0.21 -81.74 By element: Atomic # 1 Polarization: 29.23 SS G_CDS: -1.19 Total: 28.04 kcal Atomic # 6 Polarization: 11.83 SS G_CDS: 5.76 Total: 17.59 kcal Atomic # 7 Polarization: -105.27 SS G_CDS: -7.09 Total: -112.36 kcal Atomic # 8 Polarization: -57.42 SS G_CDS: -0.50 Total: -57.92 kcal Atomic # 9 Polarization: -2.32 SS G_CDS: 0.78 Total: -1.54 kcal Atomic # 14 Polarization: 42.43 SS G_CDS: 2.03 Total: 44.46 kcal Total: -81.53 -0.21 -81.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001150685729.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.033 kcal (2) G-P(sol) polarization free energy of solvation -81.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds