Wall clock time and date at job start Sat Apr 11 2020 05:40:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86804 * 119.99339 * 2 1 4 4 H 1.48501 * 109.47161 * 269.99980 * 3 2 1 5 5 H 1.48497 * 109.47344 * 30.00172 * 3 2 1 6 6 H 1.48497 * 109.46878 * 150.00381 * 3 2 1 7 7 C 1.38809 * 120.00302 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99673 * 195.44522 * 7 2 1 9 9 N 1.36932 * 120.00352 * 15.45168 * 7 2 1 10 10 C 1.47511 * 118.75660 * 26.09449 * 9 7 2 11 11 C 1.53572 * 111.03021 * 138.35328 * 10 9 7 12 12 C 1.51543 * 109.57954 * 320.02679 * 11 10 9 13 13 O 1.42146 * 108.75816 * 91.39687 * 12 11 10 14 14 C 1.38019 * 119.43946 * 272.77046 * 13 12 11 15 15 H 1.09002 * 109.46916 * 303.42753 * 14 13 12 16 16 C 1.52998 * 109.47052 * 183.43205 * 14 13 12 17 17 N 1.46506 * 109.46853 * 65.00081 * 16 14 13 18 18 C 1.34785 * 119.99554 * 180.02562 * 17 16 14 19 19 O 1.21276 * 120.00291 * 359.97438 * 18 17 16 20 20 C 1.50704 * 119.99477 * 180.02562 * 18 17 16 21 21 C 1.52998 * 109.46776 * 179.97438 * 20 18 17 22 22 C 1.50697 * 109.46958 * 179.97438 * 21 20 18 23 23 N 1.29029 * 124.91272 * 89.69634 * 22 21 20 24 24 C 1.31789 * 117.12711 * 179.81008 * 23 22 21 25 25 C 1.33645 * 114.49359 * 0.47747 * 24 23 22 26 26 S 1.70969 * 124.92080 * 270.00050 * 22 21 20 27 27 C 1.45120 * 118.76030 * 206.07967 * 9 7 2 28 28 H 0.96995 * 120.00612 * 0.02562 * 1 2 3 29 29 H 1.09001 * 109.16861 * 258.75439 * 10 9 7 30 30 H 1.09002 * 109.16813 * 18.01103 * 10 9 7 31 31 H 1.08999 * 109.45563 * 199.99078 * 11 10 9 32 32 H 1.08997 * 109.44862 * 80.05594 * 11 10 9 33 33 H 1.09002 * 109.58736 * 331.61149 * 12 11 10 34 34 H 1.08998 * 109.58384 * 211.18254 * 12 11 10 35 35 H 1.09002 * 109.47542 * 185.00024 * 16 14 13 36 36 H 1.09006 * 109.47603 * 305.00214 * 16 14 13 37 37 H 0.96990 * 120.00327 * 359.97438 * 17 16 14 38 38 H 1.08997 * 109.47183 * 299.99571 * 20 18 17 39 39 H 1.08997 * 109.47550 * 59.99744 * 20 18 17 40 40 H 1.08997 * 109.47092 * 299.99844 * 21 20 18 41 41 H 1.09005 * 109.47089 * 60.00058 * 21 20 18 42 42 H 1.07995 * 122.75341 * 180.22203 * 24 23 22 43 43 H 1.08000 * 126.03107 * 179.71773 * 25 24 23 44 44 H 1.09004 * 109.46167 * 149.28169 * 27 9 7 45 45 H 1.09004 * 109.45622 * 29.32335 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2500 1.6179 0.0000 4 1 2.4975 2.0466 -1.4001 5 1 1.4474 2.6527 0.7000 6 1 3.5476 1.4404 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0611 -1.2190 0.2486 9 7 1.3629 -2.3665 -0.3170 10 6 0.1710 -2.3027 -1.1837 11 6 0.1766 -3.4422 -2.2133 12 6 1.5842 -3.6473 -2.7360 13 8 2.2340 -4.6209 -1.9296 14 6 2.8931 -4.2226 -0.7842 15 1 3.6430 -3.4735 -1.0384 16 6 3.5770 -5.4316 -0.1428 17 7 4.6232 -5.9324 -1.0377 18 6 5.3629 -7.0004 -0.6785 19 8 5.1626 -7.5465 0.3857 20 6 6.4395 -7.5152 -1.5988 21 6 7.1233 -8.7243 -0.9575 22 6 8.1995 -9.2395 -1.8781 23 7 9.4282 -8.8457 -1.8710 24 6 10.2431 -9.4039 -2.7434 25 6 9.6676 -10.3124 -3.5367 26 16 7.9675 -10.4252 -3.0878 27 6 1.8755 -3.6165 0.2126 28 1 -0.4851 0.8399 -0.0004 29 1 -0.7245 -2.3819 -0.5672 30 1 0.1607 -1.3474 -1.7085 31 1 -0.4845 -3.1866 -3.0413 32 1 -0.1723 -4.3602 -1.7405 33 1 2.1329 -2.7067 -2.6870 34 1 1.5435 -3.9956 -3.7680 35 1 4.0224 -5.1357 0.8071 36 1 2.8405 -6.2164 0.0302 37 1 4.7832 -5.4960 -1.8890 38 1 5.9946 -7.8107 -2.5490 39 1 7.1762 -6.7306 -1.7710 40 1 7.5683 -8.4285 -0.0075 41 1 6.3868 -9.5092 -0.7850 42 1 11.2893 -9.1453 -2.8142 43 1 10.1580 -10.8773 -4.3158 44 1 1.0509 -4.3142 0.3591 45 1 2.3682 -3.4316 1.1672 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001150751087.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:43 Heat of formation + Delta-G solvation = -17.546748 kcal Electronic energy + Delta-G solvation = -26658.524009 eV Core-core repulsion = 22803.606210 eV Total energy + Delta-G solvation = -3854.917799 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.13569 -39.66883 -38.79611 -35.32270 -34.70512 -34.10743 -32.16745 -31.51480 -30.13701 -28.62497 -26.62989 -25.56078 -25.10249 -23.55151 -22.49105 -20.89595 -20.33473 -20.13219 -19.54828 -18.36880 -17.20092 -16.96148 -16.28726 -16.01151 -15.83952 -15.63202 -15.16615 -15.05076 -14.63006 -14.28792 -14.20625 -13.77707 -13.66709 -13.35417 -12.98059 -12.92415 -12.61649 -12.41597 -12.19218 -12.10181 -11.86074 -11.45092 -11.39376 -11.22646 -11.00196 -10.89294 -10.67491 -10.25745 -10.00509 -9.93173 -9.87261 -9.78683 -9.75594 -9.71223 -9.23444 -8.95393 -8.84551 -8.46248 -6.78898 -5.86775 -3.31929 0.33530 1.00229 1.39776 2.47366 2.65593 3.20101 3.31759 3.39401 3.40256 3.84384 4.13953 4.41719 4.51551 4.70632 4.77812 4.84780 5.02245 5.11603 5.17452 5.26454 5.33435 5.50981 5.53717 5.60013 5.68035 5.72551 5.83337 5.85084 5.96865 6.01487 6.14399 6.24083 6.32383 6.49314 6.57499 6.67743 6.72068 6.79923 7.32390 7.39182 7.56111 7.60669 7.73948 8.17686 8.25323 8.36300 9.14148 9.78824 10.24839 11.20681 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.019823 B = 0.001994 C = 0.001927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.155956 B =14040.799798 C =14529.824901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.006 3.994 3 Si 0.903 3.097 4 H -0.287 1.287 5 H -0.291 1.291 6 H -0.278 1.278 7 C -0.266 4.266 8 H 0.067 0.933 9 N -0.592 5.592 10 C 0.177 3.823 11 C -0.177 4.177 12 C 0.088 3.912 13 O -0.396 6.396 14 C 0.066 3.934 15 H 0.052 0.948 16 C 0.132 3.868 17 N -0.719 5.719 18 C 0.513 3.487 19 O -0.546 6.546 20 C -0.135 4.135 21 C -0.029 4.029 22 C 0.055 3.945 23 N -0.474 5.474 24 C 0.039 3.961 25 C -0.265 4.265 26 S 0.122 5.878 27 C 0.128 3.872 28 H 0.254 0.746 29 H 0.027 0.973 30 H 0.075 0.925 31 H 0.060 0.940 32 H 0.057 0.943 33 H 0.061 0.939 34 H 0.069 0.931 35 H 0.080 0.920 36 H 0.072 0.928 37 H 0.403 0.597 38 H 0.095 0.905 39 H 0.100 0.900 40 H 0.104 0.896 41 H 0.095 0.905 42 H 0.176 0.824 43 H 0.177 0.823 44 H 0.044 0.956 45 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.084 -18.667 -9.413 25.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.193 4.193 3 Si 0.732 3.268 4 H -0.214 1.214 5 H -0.217 1.217 6 H -0.204 1.204 7 C -0.395 4.395 8 H 0.084 0.916 9 N -0.313 5.313 10 C 0.052 3.948 11 C -0.216 4.216 12 C 0.012 3.988 13 O -0.315 6.315 14 C 0.004 3.996 15 H 0.069 0.931 16 C 0.008 3.992 17 N -0.369 5.369 18 C 0.299 3.701 19 O -0.424 6.424 20 C -0.176 4.176 21 C -0.070 4.070 22 C -0.222 4.222 23 N -0.188 5.188 24 C -0.112 4.112 25 C -0.404 4.404 26 S 0.376 5.624 27 C -0.002 4.002 28 H 0.065 0.935 29 H 0.045 0.955 30 H 0.094 0.906 31 H 0.079 0.921 32 H 0.076 0.924 33 H 0.079 0.921 34 H 0.087 0.913 35 H 0.098 0.902 36 H 0.091 0.909 37 H 0.237 0.763 38 H 0.114 0.886 39 H 0.118 0.882 40 H 0.123 0.877 41 H 0.114 0.886 42 H 0.193 0.807 43 H 0.194 0.806 44 H 0.062 0.938 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 13.077 -19.247 -8.633 24.819 hybrid contribution 1.433 1.710 -0.576 2.304 sum 14.510 -17.537 -9.209 24.554 Atomic orbital electron populations 1.70067 1.05237 1.25596 1.53689 1.25053 0.95309 0.98446 1.00447 0.86290 0.79154 0.83619 0.77698 1.21413 1.21679 1.20380 1.19225 0.92390 0.84856 1.43042 0.91554 1.43835 1.31455 1.01553 1.54424 1.20997 0.88450 0.95443 0.89909 1.22774 0.97075 1.01331 1.00409 1.22010 0.92788 0.92202 0.91780 1.86067 1.70676 1.37972 1.36801 1.22631 0.94882 0.93917 0.88136 0.93055 1.21443 0.88947 0.96068 0.92738 1.45997 1.36323 1.31564 1.23048 1.20415 0.82348 0.80180 0.87187 1.90710 1.69479 1.58089 1.24135 1.21630 0.97611 0.98943 0.99460 1.20006 0.92955 0.97457 0.96609 1.27187 0.95791 0.98602 1.00664 1.66311 1.02097 1.27065 1.23365 1.21856 1.01173 0.95332 0.92795 1.27114 0.96950 1.07777 1.08543 1.84138 1.08820 1.39036 1.30439 1.21411 0.95126 0.88970 0.94658 0.93541 0.95457 0.90646 0.92114 0.92384 0.92065 0.91264 0.90173 0.90929 0.76255 0.88624 0.88182 0.87735 0.88626 0.80724 0.80590 0.93809 0.92605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.40 11.00 55.49 0.61 -24.79 16 2 C 0.01 0.17 4.89 -17.43 -0.09 0.09 16 3 Si 0.90 21.12 29.58 -169.99 -5.03 16.10 16 4 H -0.29 -6.69 7.11 56.52 0.40 -6.28 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 7 C -0.27 -6.95 9.46 -15.06 -0.14 -7.09 16 8 H 0.07 1.71 7.88 -52.49 -0.41 1.30 16 9 N -0.59 -14.05 2.23 -172.02 -0.38 -14.44 16 10 C 0.18 4.07 4.70 -3.19 -0.02 4.06 16 11 C -0.18 -3.24 5.79 -27.17 -0.16 -3.39 16 12 C 0.09 1.50 6.37 36.42 0.23 1.74 16 13 O -0.40 -6.72 9.38 -26.55 -0.25 -6.97 16 14 C 0.07 1.12 2.68 -25.78 -0.07 1.05 16 15 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 16 C 0.13 1.94 5.34 -4.04 -0.02 1.92 16 17 N -0.72 -8.98 5.49 -60.29 -0.33 -9.31 16 18 C 0.51 6.41 7.83 -10.98 -0.09 6.32 16 19 O -0.55 -8.75 15.98 5.56 0.09 -8.66 16 20 C -0.13 -1.20 5.68 -27.88 -0.16 -1.36 16 21 C -0.03 -0.27 5.09 -27.89 -0.14 -0.41 16 22 C 0.06 0.52 6.64 -13.46 -0.09 0.43 16 23 N -0.47 -4.97 10.54 -11.86 -0.13 -5.09 16 24 C 0.04 0.32 11.35 -19.18 -0.22 0.10 16 25 C -0.26 -1.78 11.37 29.12 0.33 -1.44 16 26 S 0.12 0.90 23.18 -107.50 -2.49 -1.59 16 27 C 0.13 2.57 5.12 -3.83 -0.02 2.55 16 28 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 29 H 0.03 0.69 8.04 -51.93 -0.42 0.27 16 30 H 0.08 1.92 6.37 -51.93 -0.33 1.59 16 31 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.06 1.06 8.01 -51.93 -0.42 0.65 16 33 H 0.06 1.17 7.40 -51.93 -0.38 0.78 16 34 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 35 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 36 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 37 H 0.40 4.35 8.46 -40.82 -0.35 4.00 16 38 H 0.10 0.69 8.14 -51.93 -0.42 0.26 16 39 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.10 1.09 8.10 -51.93 -0.42 0.67 16 41 H 0.10 0.85 8.10 -51.93 -0.42 0.43 16 42 H 0.18 0.99 8.06 -52.49 -0.42 0.57 16 43 H 0.18 0.70 8.06 -52.49 -0.42 0.28 16 44 H 0.04 0.87 8.11 -51.93 -0.42 0.45 16 45 H 0.06 1.13 7.98 -51.93 -0.41 0.71 16 LS Contribution 380.87 15.07 5.74 5.74 Total: -1.00 -31.43 380.87 -9.73 -41.17 By element: Atomic # 1 Polarization: 10.23 SS G_CDS: -6.92 Total: 3.30 kcal Atomic # 6 Polarization: 5.19 SS G_CDS: -0.64 Total: 4.55 kcal Atomic # 7 Polarization: -53.40 SS G_CDS: -0.23 Total: -53.63 kcal Atomic # 8 Polarization: -15.47 SS G_CDS: -0.16 Total: -15.63 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.03 Total: 16.10 kcal Atomic # 16 Polarization: 0.90 SS G_CDS: -2.49 Total: -1.59 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -31.43 -9.73 -41.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001150751087.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.620 kcal (2) G-P(sol) polarization free energy of solvation -31.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds