Wall clock time and date at job start Sat Apr 11 2020 05:40:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86804 * 119.99339 * 2 1 4 4 H 1.48501 * 109.47161 * 269.99980 * 3 2 1 5 5 H 1.48497 * 109.47344 * 30.00172 * 3 2 1 6 6 H 1.48497 * 109.46878 * 150.00381 * 3 2 1 7 7 C 1.38809 * 120.00302 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99673 * 195.44522 * 7 2 1 9 9 N 1.36932 * 120.00352 * 15.45168 * 7 2 1 10 10 C 1.47511 * 118.75660 * 26.09449 * 9 7 2 11 11 C 1.53572 * 111.03021 * 138.35328 * 10 9 7 12 12 C 1.51543 * 109.57954 * 320.02679 * 11 10 9 13 13 O 1.42146 * 108.75816 * 91.39687 * 12 11 10 14 14 C 1.38019 * 119.43946 * 272.77046 * 13 12 11 15 15 H 1.09002 * 109.46916 * 303.42753 * 14 13 12 16 16 C 1.52998 * 109.47052 * 183.43205 * 14 13 12 17 17 N 1.46506 * 109.46853 * 65.00081 * 16 14 13 18 18 C 1.34785 * 119.99554 * 180.02562 * 17 16 14 19 19 O 1.21276 * 120.00291 * 359.97438 * 18 17 16 20 20 C 1.50704 * 119.99477 * 180.02562 * 18 17 16 21 21 C 1.52998 * 109.46776 * 179.97438 * 20 18 17 22 22 C 1.50697 * 109.46958 * 179.97438 * 21 20 18 23 23 N 1.29029 * 124.91272 * 89.69634 * 22 21 20 24 24 C 1.31789 * 117.12711 * 179.81008 * 23 22 21 25 25 C 1.33645 * 114.49359 * 0.47747 * 24 23 22 26 26 S 1.70969 * 124.92080 * 270.00050 * 22 21 20 27 27 C 1.45120 * 118.76030 * 206.07967 * 9 7 2 28 28 H 0.96995 * 120.00612 * 0.02562 * 1 2 3 29 29 H 1.09001 * 109.16861 * 258.75439 * 10 9 7 30 30 H 1.09002 * 109.16813 * 18.01103 * 10 9 7 31 31 H 1.08999 * 109.45563 * 199.99078 * 11 10 9 32 32 H 1.08997 * 109.44862 * 80.05594 * 11 10 9 33 33 H 1.09002 * 109.58736 * 331.61149 * 12 11 10 34 34 H 1.08998 * 109.58384 * 211.18254 * 12 11 10 35 35 H 1.09002 * 109.47542 * 185.00024 * 16 14 13 36 36 H 1.09006 * 109.47603 * 305.00214 * 16 14 13 37 37 H 0.96990 * 120.00327 * 359.97438 * 17 16 14 38 38 H 1.08997 * 109.47183 * 299.99571 * 20 18 17 39 39 H 1.08997 * 109.47550 * 59.99744 * 20 18 17 40 40 H 1.08997 * 109.47092 * 299.99844 * 21 20 18 41 41 H 1.09005 * 109.47089 * 60.00058 * 21 20 18 42 42 H 1.07995 * 122.75341 * 180.22203 * 24 23 22 43 43 H 1.08000 * 126.03107 * 179.71773 * 25 24 23 44 44 H 1.09004 * 109.46167 * 149.28169 * 27 9 7 45 45 H 1.09004 * 109.45622 * 29.32335 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2500 1.6179 0.0000 4 1 2.4975 2.0466 -1.4001 5 1 1.4474 2.6527 0.7000 6 1 3.5476 1.4404 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0611 -1.2190 0.2486 9 7 1.3629 -2.3665 -0.3170 10 6 0.1710 -2.3027 -1.1837 11 6 0.1766 -3.4422 -2.2133 12 6 1.5842 -3.6473 -2.7360 13 8 2.2340 -4.6209 -1.9296 14 6 2.8931 -4.2226 -0.7842 15 1 3.6430 -3.4735 -1.0384 16 6 3.5770 -5.4316 -0.1428 17 7 4.6232 -5.9324 -1.0377 18 6 5.3629 -7.0004 -0.6785 19 8 5.1626 -7.5465 0.3857 20 6 6.4395 -7.5152 -1.5988 21 6 7.1233 -8.7243 -0.9575 22 6 8.1995 -9.2395 -1.8781 23 7 9.4282 -8.8457 -1.8710 24 6 10.2431 -9.4039 -2.7434 25 6 9.6676 -10.3124 -3.5367 26 16 7.9675 -10.4252 -3.0878 27 6 1.8755 -3.6165 0.2126 28 1 -0.4851 0.8399 -0.0004 29 1 -0.7245 -2.3819 -0.5672 30 1 0.1607 -1.3474 -1.7085 31 1 -0.4845 -3.1866 -3.0413 32 1 -0.1723 -4.3602 -1.7405 33 1 2.1329 -2.7067 -2.6870 34 1 1.5435 -3.9956 -3.7680 35 1 4.0224 -5.1357 0.8071 36 1 2.8405 -6.2164 0.0302 37 1 4.7832 -5.4960 -1.8890 38 1 5.9946 -7.8107 -2.5490 39 1 7.1762 -6.7306 -1.7710 40 1 7.5683 -8.4285 -0.0075 41 1 6.3868 -9.5092 -0.7850 42 1 11.2893 -9.1453 -2.8142 43 1 10.1580 -10.8773 -4.3158 44 1 1.0509 -4.3142 0.3591 45 1 2.3682 -3.4316 1.1672 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001150751087.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:42 Heat of formation + Delta-G solvation = -38.181319 kcal Electronic energy + Delta-G solvation = -26659.418791 eV Core-core repulsion = 22803.606210 eV Total energy + Delta-G solvation = -3855.812581 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.04892 -40.57862 -40.12016 -37.00793 -35.95631 -34.89026 -33.63115 -33.40260 -30.92388 -29.97795 -27.74264 -27.14423 -26.51458 -24.61652 -23.70198 -22.28739 -21.49316 -21.13126 -20.80855 -18.99880 -18.86856 -18.10713 -17.64167 -17.31963 -16.81055 -16.62899 -16.49590 -16.31513 -15.84546 -15.51970 -15.28980 -15.09358 -14.76667 -14.65991 -14.32791 -14.03938 -13.78204 -13.63583 -13.41096 -13.13567 -13.11816 -12.97834 -12.78612 -12.47959 -12.40109 -12.39588 -12.13696 -12.06655 -11.76472 -11.48063 -11.30884 -10.99144 -10.59358 -10.53890 -10.34973 -10.27006 -10.05829 -9.81096 -8.73004 -7.89849 -5.37290 -0.24538 0.44067 0.83287 1.45364 1.46726 1.55187 1.66637 1.86036 2.21636 2.49179 2.77365 3.19737 3.25573 3.56941 3.73694 4.00130 4.06102 4.12734 4.17069 4.22899 4.29240 4.37945 4.43463 4.54340 4.58016 4.59817 4.60811 4.68680 4.75659 4.85257 4.87572 4.92391 5.02081 5.15481 5.19637 5.25339 5.26053 5.45270 5.47319 5.60979 5.75215 6.35061 6.58283 6.75428 6.80757 7.13770 7.26492 7.86130 8.27100 9.15714 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.019823 B = 0.001994 C = 0.001927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.155956 B =14040.799798 C =14529.824901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.047 4.047 3 Si 0.965 3.035 4 H -0.283 1.283 5 H -0.297 1.297 6 H -0.270 1.270 7 C -0.268 4.268 8 H 0.068 0.932 9 N -0.606 5.606 10 C 0.185 3.815 11 C -0.165 4.165 12 C 0.092 3.908 13 O -0.390 6.390 14 C 0.087 3.913 15 H 0.045 0.955 16 C 0.142 3.858 17 N -0.713 5.713 18 C 0.514 3.486 19 O -0.584 6.584 20 C -0.122 4.122 21 C -0.025 4.025 22 C 0.034 3.966 23 N -0.504 5.504 24 C 0.018 3.982 25 C -0.253 4.253 26 S 0.148 5.852 27 C 0.122 3.878 28 H 0.250 0.750 29 H -0.008 1.008 30 H 0.046 0.954 31 H 0.084 0.916 32 H 0.060 0.940 33 H 0.039 0.961 34 H 0.109 0.891 35 H 0.077 0.923 36 H 0.067 0.933 37 H 0.414 0.586 38 H 0.120 0.880 39 H 0.110 0.890 40 H 0.085 0.915 41 H 0.096 0.904 42 H 0.193 0.807 43 H 0.206 0.794 44 H 0.043 0.957 45 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.796 -20.162 -11.643 28.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.242 4.242 3 Si 0.793 3.207 4 H -0.210 1.210 5 H -0.224 1.224 6 H -0.195 1.195 7 C -0.398 4.398 8 H 0.085 0.915 9 N -0.328 5.328 10 C 0.060 3.940 11 C -0.203 4.203 12 C 0.016 3.984 13 O -0.309 6.309 14 C 0.025 3.975 15 H 0.063 0.937 16 C 0.017 3.983 17 N -0.364 5.364 18 C 0.302 3.698 19 O -0.464 6.464 20 C -0.164 4.164 21 C -0.067 4.067 22 C -0.243 4.243 23 N -0.219 5.219 24 C -0.133 4.133 25 C -0.392 4.392 26 S 0.401 5.599 27 C -0.006 4.006 28 H 0.059 0.941 29 H 0.011 0.989 30 H 0.064 0.936 31 H 0.103 0.897 32 H 0.079 0.921 33 H 0.058 0.942 34 H 0.127 0.873 35 H 0.095 0.905 36 H 0.086 0.914 37 H 0.250 0.750 38 H 0.138 0.862 39 H 0.128 0.872 40 H 0.104 0.896 41 H 0.115 0.885 42 H 0.210 0.790 43 H 0.223 0.777 44 H 0.061 0.939 45 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 14.820 -20.766 -10.886 27.738 hybrid contribution 0.907 2.082 0.126 2.275 sum 15.727 -18.684 -10.760 26.687 Atomic orbital electron populations 1.70227 1.06580 1.25800 1.55424 1.25775 0.96026 1.01421 1.01020 0.85308 0.78060 0.79700 0.77623 1.20973 1.22398 1.19464 1.19508 0.92567 0.85891 1.41837 0.91453 1.44036 1.31519 1.02135 1.55090 1.20775 0.86955 0.96108 0.90144 1.22629 0.98867 0.99179 0.99672 1.22071 0.91238 0.91594 0.93525 1.86097 1.70511 1.37859 1.36467 1.22278 0.93609 0.94472 0.87158 0.93720 1.21167 0.89374 0.94907 0.92815 1.45886 1.35691 1.31684 1.23145 1.20988 0.82413 0.79422 0.87021 1.90698 1.70602 1.59192 1.25956 1.21584 0.96492 0.98961 0.99316 1.19899 0.93064 0.97654 0.96050 1.27084 0.95584 0.99875 1.01732 1.66299 1.02850 1.28256 1.24513 1.22193 1.01982 0.96043 0.93035 1.27512 0.96590 1.06835 1.08281 1.84022 1.09186 1.37636 1.29046 1.21579 0.95814 0.87756 0.95432 0.94124 0.98938 0.93582 0.89723 0.92088 0.94224 0.87292 0.90491 0.91445 0.74957 0.86151 0.87183 0.89608 0.88516 0.79004 0.77742 0.93885 0.93168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.26 11.00 21.65 0.24 -54.03 16 2 C -0.05 -2.55 4.89 84.86 0.41 -2.14 16 3 Si 0.96 43.97 29.58 68.60 2.03 45.99 16 4 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 5 H -0.30 -13.77 7.11 99.48 0.71 -13.07 16 6 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 7 C -0.27 -14.19 9.46 84.03 0.80 -13.39 16 8 H 0.07 3.49 7.88 -2.91 -0.02 3.46 16 9 N -0.61 -29.22 2.23 -698.15 -1.55 -30.78 16 10 C 0.19 8.71 4.70 86.38 0.41 9.12 16 11 C -0.16 -5.81 5.79 30.31 0.18 -5.64 16 12 C 0.09 2.91 6.37 71.50 0.46 3.36 16 13 O -0.39 -12.39 9.38 -117.91 -1.11 -13.49 16 14 C 0.09 2.83 2.68 31.21 0.08 2.91 16 15 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 16 C 0.14 4.03 5.34 86.38 0.46 4.49 16 17 N -0.71 -16.54 5.49 -463.03 -2.54 -19.08 16 18 C 0.51 12.16 7.83 87.66 0.69 12.84 16 19 O -0.58 -18.48 15.98 -3.02 -0.05 -18.53 16 20 C -0.12 -1.96 5.68 29.85 0.17 -1.79 16 21 C -0.03 -0.45 5.09 29.85 0.15 -0.30 16 22 C 0.03 0.59 6.64 88.52 0.59 1.18 16 23 N -0.50 -10.01 10.54 -191.45 -2.02 -12.02 16 24 C 0.02 0.25 11.35 83.66 0.95 1.20 16 25 C -0.25 -2.71 11.37 66.78 0.76 -1.95 16 26 S 0.15 1.84 23.18 -56.49 -1.31 0.53 16 27 C 0.12 4.93 5.12 87.25 0.45 5.37 16 28 H 0.25 14.10 8.31 -92.71 -0.77 13.33 16 29 H -0.01 -0.40 8.04 -2.39 -0.02 -0.42 16 30 H 0.05 2.42 6.37 -2.39 -0.02 2.40 16 31 H 0.08 2.59 8.14 -2.39 -0.02 2.57 16 32 H 0.06 2.14 8.01 -2.39 -0.02 2.12 16 33 H 0.04 1.45 7.40 -2.39 -0.02 1.44 16 34 H 0.11 2.68 8.14 -2.39 -0.02 2.66 16 35 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 36 H 0.07 2.02 8.14 -2.38 -0.02 2.00 16 37 H 0.41 7.88 8.46 -92.72 -0.78 7.10 16 38 H 0.12 1.36 8.14 -2.39 -0.02 1.34 16 39 H 0.11 1.60 8.14 -2.39 -0.02 1.58 16 40 H 0.09 1.82 8.10 -2.39 -0.02 1.80 16 41 H 0.10 1.65 8.10 -2.38 -0.02 1.63 16 42 H 0.19 1.83 8.06 -2.91 -0.02 1.80 16 43 H 0.21 0.86 8.06 -2.91 -0.02 0.84 16 44 H 0.04 1.73 8.11 -2.38 -0.02 1.71 16 45 H 0.05 2.05 7.98 -2.38 -0.02 2.03 16 Total: -1.00 -69.45 380.87 0.44 -69.01 By element: Atomic # 1 Polarization: 16.90 SS G_CDS: 0.21 Total: 17.11 kcal Atomic # 6 Polarization: 8.74 SS G_CDS: 6.54 Total: 15.29 kcal Atomic # 7 Polarization: -110.03 SS G_CDS: -5.88 Total: -115.91 kcal Atomic # 8 Polarization: -30.86 SS G_CDS: -1.15 Total: -32.02 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 45.99 kcal Atomic # 16 Polarization: 1.84 SS G_CDS: -1.31 Total: 0.53 kcal Total: -69.45 0.44 -69.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001150751087.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.824 kcal (2) G-P(sol) polarization free energy of solvation -69.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds