Wall clock time and date at job start Sat Apr 11 2020 05:41:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31406 * 1 3 3 Si 1.86799 * 120.00204 * 2 1 4 4 H 1.48493 * 109.47325 * 240.00118 * 3 2 1 5 5 H 1.48497 * 109.47037 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46976 * 119.99906 * 3 2 1 7 7 C 1.38952 * 120.00175 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00537 * 179.97438 * 7 2 1 9 9 N 1.37102 * 119.99923 * 0.02562 * 7 2 1 10 10 C 1.34780 * 120.00214 * 179.97438 * 9 7 2 11 11 O 1.21292 * 119.99684 * 359.97438 * 10 9 7 12 12 C 1.50701 * 119.99864 * 179.97438 * 10 9 7 13 13 N 1.46900 * 109.46729 * 179.97438 * 12 10 9 14 14 C 1.46904 * 110.99696 * 179.97438 * 13 12 10 15 15 C 1.53000 * 109.46977 * 180.02562 * 14 13 12 16 16 N 1.46499 * 109.47474 * 179.97438 * 15 14 13 17 17 C 1.34771 * 120.00232 * 180.02562 * 16 15 14 18 18 O 1.21593 * 120.00343 * 359.97438 * 17 16 15 19 19 C 1.47527 * 119.99610 * 180.02562 * 17 16 15 20 20 C 1.36597 * 125.76547 * 179.97438 * 19 17 16 21 21 N 1.34820 * 106.83727 * 179.71308 * 20 19 17 22 22 C 1.46495 * 126.59519 * 180.24451 * 21 20 19 23 23 C 1.50697 * 109.47431 * 125.00213 * 22 21 20 24 24 N 1.34772 * 120.00639 * 179.97438 * 23 22 21 25 25 O 1.21284 * 119.99593 * 359.97438 * 23 22 21 26 26 N 1.40214 * 106.80954 * 0.26969 * 21 20 19 27 27 N 1.28759 * 108.36470 * 359.97438 * 26 21 20 28 28 H 0.96997 * 120.00431 * 0.02562 * 1 2 3 29 29 H 0.96998 * 119.99986 * 359.97438 * 9 7 2 30 30 H 1.08995 * 109.46787 * 59.99974 * 12 10 9 31 31 H 1.08999 * 109.47131 * 299.99849 * 12 10 9 32 32 H 1.00896 * 111.00744 * 303.95771 * 13 12 10 33 33 H 1.08992 * 109.47051 * 60.00536 * 14 13 12 34 34 H 1.08997 * 109.46860 * 299.99929 * 14 13 12 35 35 H 1.09006 * 109.47166 * 60.00244 * 15 14 13 36 36 H 1.08996 * 109.47201 * 300.00523 * 15 14 13 37 37 H 0.97003 * 119.99564 * 0.02562 * 16 15 14 38 38 H 1.08002 * 126.58530 * 359.97438 * 20 19 17 39 39 H 1.09003 * 109.47068 * 245.00542 * 22 21 20 40 40 H 1.09007 * 109.46947 * 5.00303 * 22 21 20 41 41 H 0.97001 * 119.99717 * 0.02562 * 24 23 22 42 42 H 0.96994 * 120.00382 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1018 1.6964 -1.2124 5 1 1.2832 2.7464 0.0006 6 1 3.1018 1.6963 1.2125 7 6 2.0089 -1.2033 0.0005 8 1 3.0888 -1.2034 0.0001 9 7 1.3234 -2.3907 0.0005 10 6 1.9972 -3.5579 0.0005 11 8 3.2102 -3.5579 0.0001 12 6 1.2437 -4.8630 0.0011 13 7 2.1983 -5.9795 0.0004 14 6 1.4980 -7.2709 0.0015 15 6 2.5229 -8.4069 0.0014 16 7 1.8246 -9.6947 0.0031 17 6 2.5293 -10.8435 0.0038 18 8 3.7448 -10.8111 0.0025 19 6 1.8260 -12.1403 0.0051 20 6 2.4196 -13.3705 0.0054 21 7 1.4272 -14.2830 0.0130 22 6 1.5804 -15.7399 0.0212 23 6 0.8252 -16.3179 1.1902 24 7 0.8233 -17.6493 1.3995 25 8 0.2190 -15.5849 1.9426 26 7 0.2202 -13.5694 0.0110 27 7 0.4929 -12.3111 0.0032 28 1 -0.4851 0.8400 -0.0004 29 1 0.3534 -2.3907 0.0005 30 1 0.6167 -4.9209 -0.8886 31 1 0.6174 -4.9205 0.8914 32 1 2.8326 -5.9125 -0.7814 33 1 0.8722 -7.3456 -0.8877 34 1 0.8741 -7.3450 0.8922 35 1 3.1484 -8.3320 0.8909 36 1 3.1472 -8.3328 -0.8890 37 1 0.8549 -9.7206 0.0038 38 1 3.4804 -13.5733 0.0044 39 1 1.1845 -16.1521 -0.9069 40 1 2.6369 -15.9936 0.1099 41 1 1.3084 -18.2355 0.7979 42 1 0.3374 -18.0212 2.1521 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001152409608.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:01 Heat of formation + Delta-G solvation = -2.043919 kcal Electronic energy + Delta-G solvation = -26895.347087 eV Core-core repulsion = 22527.101078 eV Total energy + Delta-G solvation = -4368.246009 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.149 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.65027 -40.19277 -39.49159 -38.26241 -36.24861 -35.14639 -34.52323 -34.27312 -33.68280 -31.47830 -31.18949 -29.74653 -28.76641 -26.09157 -24.28820 -23.52874 -23.18138 -21.98386 -21.68784 -20.59099 -19.24304 -18.90185 -18.05470 -17.87526 -17.61780 -16.69263 -16.37618 -16.22344 -15.95877 -15.89973 -15.65338 -15.03348 -14.98960 -14.60118 -14.42679 -14.34945 -13.90048 -13.77802 -13.49876 -13.33253 -13.07634 -12.50773 -12.36305 -11.88750 -11.71627 -11.48123 -11.39952 -11.37325 -11.30580 -10.97655 -10.61825 -10.53182 -10.41171 -10.37504 -10.17801 -9.70115 -9.46539 -9.17733 -8.45105 -8.06932 -7.92647 -6.38163 -3.78970 0.67206 1.35294 1.42213 1.70966 2.54393 2.87373 3.07354 3.23458 3.28863 3.33593 3.66040 3.79404 3.92321 3.94473 4.06665 4.15266 4.28882 4.46403 4.57558 4.81732 4.93209 5.05772 5.23621 5.30133 5.36766 5.48485 5.71548 5.79300 5.89568 5.94702 5.97052 6.01018 6.22449 6.30830 6.40120 7.15003 7.25048 7.36487 7.58579 7.59522 7.63974 7.98111 8.09621 8.64895 9.21314 9.57767 10.09351 10.79531 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.043617 B = 0.001319 C = 0.001293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 641.795777 B =21228.446072 C =21646.033679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.023 3.977 3 Si 0.931 3.069 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.300 4.300 8 H 0.103 0.897 9 N -0.563 5.563 10 C 0.440 3.560 11 O -0.582 6.582 12 C 0.052 3.948 13 N -0.665 5.665 14 C 0.048 3.952 15 C 0.121 3.879 16 N -0.712 5.712 17 C 0.606 3.394 18 O -0.537 6.537 19 C -0.097 4.097 20 C 0.095 3.905 21 N -0.358 5.358 22 C 0.103 3.897 23 C 0.504 3.496 24 N -0.849 5.849 25 O -0.508 6.508 26 N -0.032 5.032 27 N -0.204 5.204 28 H 0.272 0.728 29 H 0.392 0.608 30 H 0.045 0.955 31 H 0.088 0.912 32 H 0.352 0.648 33 H 0.035 0.965 34 H 0.079 0.921 35 H 0.083 0.917 36 H 0.072 0.928 37 H 0.409 0.591 38 H 0.207 0.793 39 H 0.131 0.869 40 H 0.137 0.863 41 H 0.404 0.596 42 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.168 -39.164 -2.229 39.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.179 4.179 3 Si 0.758 3.242 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.430 4.430 8 H 0.121 0.879 9 N -0.200 5.200 10 C 0.226 3.774 11 O -0.467 6.467 12 C -0.080 4.080 13 N -0.298 5.298 14 C -0.082 4.082 15 C -0.003 4.003 16 N -0.363 5.363 17 C 0.389 3.611 18 O -0.413 6.413 19 C -0.235 4.235 20 C -0.060 4.060 21 N -0.144 5.144 22 C -0.023 4.023 23 C 0.285 3.715 24 N -0.415 5.415 25 O -0.380 6.380 26 N -0.012 5.012 27 N -0.079 5.079 28 H 0.082 0.918 29 H 0.226 0.774 30 H 0.063 0.937 31 H 0.106 0.894 32 H 0.172 0.828 33 H 0.053 0.947 34 H 0.097 0.903 35 H 0.101 0.899 36 H 0.090 0.910 37 H 0.244 0.756 38 H 0.224 0.776 39 H 0.149 0.851 40 H 0.155 0.845 41 H 0.233 0.767 42 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -0.037 -38.407 -1.160 38.425 hybrid contribution 0.026 0.111 -0.869 0.876 sum -0.011 -38.297 -2.028 38.350 Atomic orbital electron populations 1.69601 1.05937 1.28250 1.50561 1.25253 0.95621 0.99696 0.97299 0.85915 0.78755 0.80454 0.79080 1.19923 1.21001 1.19876 1.19668 0.93376 0.82254 1.47692 0.87947 1.41847 1.09198 1.04564 1.64372 1.19789 0.88392 0.84710 0.84546 1.90529 1.13733 1.87043 1.55345 1.21669 0.94225 0.90737 1.01409 1.59922 1.18911 0.99445 1.51551 1.22085 0.95547 0.89253 1.01312 1.21341 0.94976 0.80279 1.03665 1.45676 1.11014 1.05393 1.74195 1.16662 0.86066 0.81848 0.76494 1.90834 1.12575 1.87042 1.50841 1.21438 0.89941 0.95039 1.17123 1.23342 0.96533 0.88183 0.97949 1.49838 1.06594 1.06943 1.50991 1.21738 1.04246 0.75848 1.00418 1.20332 0.81650 0.83245 0.86272 1.43696 1.56514 1.07059 1.34278 1.90923 1.42025 1.58895 1.46191 1.82140 1.02211 0.96537 1.20352 1.74668 1.13390 1.09744 1.10142 0.91836 0.77439 0.93674 0.89410 0.82841 0.94726 0.90282 0.89852 0.91012 0.75619 0.77589 0.85133 0.84490 0.76710 0.75760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.78 13.05 55.50 0.72 -24.06 16 2 C 0.02 0.62 5.50 -17.47 -0.10 0.52 16 3 Si 0.93 21.31 29.55 -169.99 -5.02 16.28 16 4 H -0.27 -6.22 7.11 56.52 0.40 -5.81 16 5 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 6 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 7 C -0.30 -8.49 9.68 -14.93 -0.14 -8.64 16 8 H 0.10 3.03 7.16 -52.49 -0.38 2.65 16 9 N -0.56 -14.46 5.29 -10.96 -0.06 -14.51 16 10 C 0.44 10.55 7.82 -10.98 -0.09 10.46 16 11 O -0.58 -16.07 15.78 5.55 0.09 -15.99 16 12 C 0.05 0.93 6.17 -4.98 -0.03 0.90 16 13 N -0.67 -10.83 6.12 -115.06 -0.70 -11.53 16 14 C 0.05 0.59 5.80 -3.82 -0.02 0.57 16 15 C 0.12 1.46 5.93 -4.04 -0.02 1.43 16 16 N -0.71 -7.93 5.55 -61.35 -0.34 -8.27 16 17 C 0.61 7.43 7.82 -12.48 -0.10 7.33 16 18 O -0.54 -7.90 16.86 5.28 0.09 -7.81 16 19 C -0.10 -1.04 6.99 -83.55 -0.58 -1.63 16 20 C 0.10 0.70 11.27 -16.83 -0.19 0.51 16 21 N -0.36 -2.52 3.41 -62.24 -0.21 -2.73 16 22 C 0.10 0.16 7.02 -5.20 -0.04 0.13 16 23 C 0.50 2.22 8.13 -10.99 -0.09 2.13 16 24 N -0.85 -0.06 8.87 31.22 0.28 0.21 16 25 O -0.51 -5.45 16.57 5.55 0.09 -5.36 16 26 N -0.03 -0.36 12.89 60.35 0.78 0.42 16 27 N -0.20 -2.43 12.04 32.85 0.40 -2.04 16 28 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 29 H 0.39 9.60 7.90 -40.82 -0.32 9.28 16 30 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 31 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 32 H 0.35 5.87 8.43 -39.29 -0.33 5.54 16 33 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 36 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 37 H 0.41 3.98 8.16 -40.82 -0.33 3.65 16 38 H 0.21 0.75 8.06 -52.49 -0.42 0.33 16 39 H 0.13 -0.16 8.14 -51.93 -0.42 -0.58 16 40 H 0.14 -0.37 8.08 -51.92 -0.42 -0.79 16 41 H 0.40 -1.51 8.83 -40.82 -0.36 -1.87 16 42 H 0.41 0.08 8.93 -40.82 -0.36 -0.28 16 LS Contribution 380.29 15.07 5.73 5.73 Total: -1.00 -41.33 380.29 -4.59 -45.92 By element: Atomic # 1 Polarization: 15.04 SS G_CDS: -5.02 Total: 10.01 kcal Atomic # 6 Polarization: 15.12 SS G_CDS: -1.40 Total: 13.71 kcal Atomic # 7 Polarization: -63.37 SS G_CDS: 0.86 Total: -62.51 kcal Atomic # 8 Polarization: -29.42 SS G_CDS: 0.27 Total: -29.15 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -41.33 -4.59 -45.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001152409608.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.879 kcal (2) G-P(sol) polarization free energy of solvation -41.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds