Wall clock time and date at job start Sat Apr 11 2020 05:41:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31406 * 1 3 3 Si 1.86799 * 120.00204 * 2 1 4 4 H 1.48493 * 109.47325 * 240.00118 * 3 2 1 5 5 H 1.48497 * 109.47037 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46976 * 119.99906 * 3 2 1 7 7 C 1.38952 * 120.00175 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00537 * 179.97438 * 7 2 1 9 9 N 1.37102 * 119.99923 * 0.02562 * 7 2 1 10 10 C 1.34780 * 120.00214 * 179.97438 * 9 7 2 11 11 O 1.21292 * 119.99684 * 359.97438 * 10 9 7 12 12 C 1.50701 * 119.99864 * 179.97438 * 10 9 7 13 13 N 1.46900 * 109.46729 * 179.97438 * 12 10 9 14 14 C 1.46904 * 110.99696 * 179.97438 * 13 12 10 15 15 C 1.53000 * 109.46977 * 180.02562 * 14 13 12 16 16 N 1.46499 * 109.47474 * 179.97438 * 15 14 13 17 17 C 1.34771 * 120.00232 * 180.02562 * 16 15 14 18 18 O 1.21593 * 120.00343 * 359.97438 * 17 16 15 19 19 C 1.47527 * 119.99610 * 180.02562 * 17 16 15 20 20 C 1.36597 * 125.76547 * 179.97438 * 19 17 16 21 21 N 1.34820 * 106.83727 * 179.71308 * 20 19 17 22 22 C 1.46495 * 126.59519 * 180.24451 * 21 20 19 23 23 C 1.50697 * 109.47431 * 125.00213 * 22 21 20 24 24 N 1.34772 * 120.00639 * 179.97438 * 23 22 21 25 25 O 1.21284 * 119.99593 * 359.97438 * 23 22 21 26 26 N 1.40214 * 106.80954 * 0.26969 * 21 20 19 27 27 N 1.28759 * 108.36470 * 359.97438 * 26 21 20 28 28 H 0.96997 * 120.00431 * 0.02562 * 1 2 3 29 29 H 0.96998 * 119.99986 * 359.97438 * 9 7 2 30 30 H 1.08995 * 109.46787 * 59.99974 * 12 10 9 31 31 H 1.08999 * 109.47131 * 299.99849 * 12 10 9 32 32 H 1.00896 * 111.00744 * 303.95771 * 13 12 10 33 33 H 1.08992 * 109.47051 * 60.00536 * 14 13 12 34 34 H 1.08997 * 109.46860 * 299.99929 * 14 13 12 35 35 H 1.09006 * 109.47166 * 60.00244 * 15 14 13 36 36 H 1.08996 * 109.47201 * 300.00523 * 15 14 13 37 37 H 0.97003 * 119.99564 * 0.02562 * 16 15 14 38 38 H 1.08002 * 126.58530 * 359.97438 * 20 19 17 39 39 H 1.09003 * 109.47068 * 245.00542 * 22 21 20 40 40 H 1.09007 * 109.46947 * 5.00303 * 22 21 20 41 41 H 0.97001 * 119.99717 * 0.02562 * 24 23 22 42 42 H 0.96994 * 120.00382 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1018 1.6964 -1.2124 5 1 1.2832 2.7464 0.0006 6 1 3.1018 1.6963 1.2125 7 6 2.0089 -1.2033 0.0005 8 1 3.0888 -1.2034 0.0001 9 7 1.3234 -2.3907 0.0005 10 6 1.9972 -3.5579 0.0005 11 8 3.2102 -3.5579 0.0001 12 6 1.2437 -4.8630 0.0011 13 7 2.1983 -5.9795 0.0004 14 6 1.4980 -7.2709 0.0015 15 6 2.5229 -8.4069 0.0014 16 7 1.8246 -9.6947 0.0031 17 6 2.5293 -10.8435 0.0038 18 8 3.7448 -10.8111 0.0025 19 6 1.8260 -12.1403 0.0051 20 6 2.4196 -13.3705 0.0054 21 7 1.4272 -14.2830 0.0130 22 6 1.5804 -15.7399 0.0212 23 6 0.8252 -16.3179 1.1902 24 7 0.8233 -17.6493 1.3995 25 8 0.2190 -15.5849 1.9426 26 7 0.2202 -13.5694 0.0110 27 7 0.4929 -12.3111 0.0032 28 1 -0.4851 0.8400 -0.0004 29 1 0.3534 -2.3907 0.0005 30 1 0.6167 -4.9209 -0.8886 31 1 0.6174 -4.9205 0.8914 32 1 2.8326 -5.9125 -0.7814 33 1 0.8722 -7.3456 -0.8877 34 1 0.8741 -7.3450 0.8922 35 1 3.1484 -8.3320 0.8909 36 1 3.1472 -8.3328 -0.8890 37 1 0.8549 -9.7206 0.0038 38 1 3.4804 -13.5733 0.0044 39 1 1.1845 -16.1521 -0.9069 40 1 2.6369 -15.9936 0.1099 41 1 1.3084 -18.2355 0.7979 42 1 0.3374 -18.0212 2.1521 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001152409608.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:01 Heat of formation + Delta-G solvation = -42.900680 kcal Electronic energy + Delta-G solvation = -26897.118769 eV Core-core repulsion = 22527.101078 eV Total energy + Delta-G solvation = -4370.017691 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.149 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.28337 -40.67547 -40.33993 -40.10147 -37.46981 -35.99753 -35.68270 -35.13835 -34.75330 -33.25556 -32.18822 -30.66044 -29.42825 -27.66975 -25.80076 -24.44519 -23.87197 -22.97473 -22.16590 -21.28729 -21.07660 -19.90731 -19.46824 -18.35652 -18.12440 -17.68676 -17.26563 -17.19875 -17.06370 -16.68517 -16.54951 -16.29697 -15.90872 -15.89261 -15.65068 -15.25827 -15.20064 -14.86625 -14.68002 -14.33661 -13.98198 -13.79881 -13.50160 -13.30366 -13.13522 -12.91869 -12.59710 -12.42567 -12.40876 -12.35660 -12.11080 -11.84002 -11.48907 -11.34286 -11.06298 -10.74704 -10.45413 -10.34877 -10.08476 -10.00357 -9.37234 -8.45216 -5.94074 0.10304 0.61603 0.96734 1.41247 1.43028 1.45075 1.54000 1.96871 2.06719 2.21005 2.31631 2.36495 2.98807 3.18115 3.22182 3.46626 3.59780 3.74182 3.86951 3.93791 3.97128 4.09153 4.13742 4.33652 4.35846 4.48451 4.51865 4.61579 4.68732 4.91607 4.96251 5.29529 5.30996 5.42157 5.80372 5.85004 6.07667 6.35209 6.35667 6.36969 6.61544 6.88155 7.09252 7.13832 7.23537 7.57487 8.12980 8.71920 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.043617 B = 0.001319 C = 0.001293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 641.795777 B =21228.446072 C =21646.033679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.011 4.011 3 Si 0.993 3.007 4 H -0.271 1.271 5 H -0.270 1.270 6 H -0.273 1.273 7 C -0.337 4.337 8 H 0.079 0.921 9 N -0.572 5.572 10 C 0.436 3.564 11 O -0.624 6.624 12 C 0.067 3.933 13 N -0.682 5.682 14 C 0.057 3.943 15 C 0.129 3.871 16 N -0.705 5.705 17 C 0.606 3.394 18 O -0.567 6.567 19 C -0.127 4.127 20 C 0.117 3.883 21 N -0.346 5.346 22 C 0.094 3.906 23 C 0.499 3.501 24 N -0.826 5.826 25 O -0.583 6.583 26 N -0.069 5.069 27 N -0.228 5.228 28 H 0.278 0.722 29 H 0.397 0.603 30 H 0.072 0.928 31 H 0.107 0.893 32 H 0.348 0.652 33 H 0.055 0.945 34 H 0.089 0.911 35 H 0.066 0.934 36 H 0.068 0.932 37 H 0.416 0.584 38 H 0.246 0.754 39 H 0.166 0.834 40 H 0.191 0.809 41 H 0.425 0.575 42 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.376 -41.263 -2.960 41.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.211 4.211 3 Si 0.816 3.184 4 H -0.196 1.196 5 H -0.194 1.194 6 H -0.198 1.198 7 C -0.466 4.466 8 H 0.097 0.903 9 N -0.209 5.209 10 C 0.223 3.777 11 O -0.510 6.510 12 C -0.065 4.065 13 N -0.315 5.315 14 C -0.073 4.073 15 C 0.005 3.995 16 N -0.357 5.357 17 C 0.391 3.609 18 O -0.446 6.446 19 C -0.266 4.266 20 C -0.040 4.040 21 N -0.131 5.131 22 C -0.029 4.029 23 C 0.282 3.718 24 N -0.392 5.392 25 O -0.461 6.461 26 N -0.050 5.050 27 N -0.102 5.102 28 H 0.087 0.913 29 H 0.231 0.769 30 H 0.090 0.910 31 H 0.125 0.875 32 H 0.167 0.833 33 H 0.073 0.927 34 H 0.107 0.893 35 H 0.085 0.915 36 H 0.086 0.914 37 H 0.252 0.748 38 H 0.262 0.738 39 H 0.183 0.817 40 H 0.208 0.792 41 H 0.258 0.742 42 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges 0.121 -40.614 -1.917 40.659 hybrid contribution 0.001 0.536 -0.641 0.836 sum 0.122 -40.078 -2.558 40.159 Atomic orbital electron populations 1.69661 1.06824 1.29374 1.50204 1.26025 0.96526 1.02365 0.96184 0.84995 0.77774 0.76660 0.78949 1.19639 1.19443 1.19799 1.19654 0.92756 0.84099 1.50131 0.90321 1.41911 1.09346 1.04656 1.64998 1.20892 0.88271 0.86228 0.82270 1.90497 1.15901 1.87969 1.56661 1.21528 0.93812 0.87662 1.03526 1.59887 1.19313 1.00592 1.51750 1.22061 0.95372 0.87097 1.02730 1.21143 0.94831 0.80808 1.02677 1.45597 1.11342 1.04936 1.73780 1.16887 0.85783 0.82529 0.75688 1.90807 1.13728 1.87557 1.52478 1.21433 0.90065 0.95460 1.19692 1.23915 0.97937 0.87030 0.95095 1.50121 1.05264 1.08831 1.48892 1.22411 1.07294 0.72657 1.00529 1.20845 0.80875 0.83910 0.86169 1.43572 1.55347 1.06075 1.34177 1.90905 1.45477 1.60762 1.48989 1.82038 1.04458 0.96630 1.21830 1.74620 1.14180 1.10544 1.10875 0.91282 0.76901 0.91004 0.87492 0.83350 0.92667 0.89266 0.91537 0.91412 0.74758 0.73754 0.81693 0.79217 0.74186 0.75695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.11 13.05 21.66 0.28 -49.83 16 2 C -0.01 -0.60 5.50 84.93 0.47 -0.13 16 3 Si 0.99 43.47 29.55 68.60 2.03 45.50 16 4 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 5 H -0.27 -11.10 7.11 99.48 0.71 -10.40 16 6 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 7 C -0.34 -19.43 9.68 84.04 0.81 -18.61 16 8 H 0.08 4.83 7.16 -2.91 -0.02 4.81 16 9 N -0.57 -29.72 5.29 -306.98 -1.62 -31.34 16 10 C 0.44 21.05 7.82 87.66 0.69 21.74 16 11 O -0.62 -35.25 15.78 -3.07 -0.05 -35.29 16 12 C 0.07 2.29 6.17 85.56 0.53 2.82 16 13 N -0.68 -21.65 6.12 -517.94 -3.17 -24.83 16 14 C 0.06 1.30 5.80 86.30 0.50 1.80 16 15 C 0.13 3.09 5.93 86.38 0.51 3.60 16 16 N -0.71 -15.55 5.55 -466.28 -2.59 -18.14 16 17 C 0.61 14.77 7.82 86.69 0.68 15.44 16 18 O -0.57 -16.59 16.86 -4.01 -0.07 -16.65 16 19 C -0.13 -2.67 6.99 40.82 0.29 -2.38 16 20 C 0.12 1.47 11.27 83.85 0.95 2.41 16 21 N -0.35 -4.18 3.41 -350.83 -1.20 -5.38 16 22 C 0.09 -0.03 7.02 85.63 0.60 0.57 16 23 C 0.50 3.53 8.13 87.66 0.71 4.24 16 24 N -0.83 1.81 8.87 -173.54 -1.54 0.27 16 25 O -0.58 -12.66 16.57 -3.04 -0.05 -12.71 16 26 N -0.07 -1.54 12.89 37.02 0.48 -1.06 16 27 N -0.23 -5.46 12.04 -49.99 -0.60 -6.06 16 28 H 0.28 14.19 8.31 -92.71 -0.77 13.42 16 29 H 0.40 19.50 7.90 -92.71 -0.73 18.77 16 30 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 31 H 0.11 3.29 8.14 -2.39 -0.02 3.27 16 32 H 0.35 11.53 8.43 -89.70 -0.76 10.77 16 33 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 35 H 0.07 1.82 8.14 -2.38 -0.02 1.80 16 36 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 37 H 0.42 7.95 8.16 -92.71 -0.76 7.20 16 38 H 0.25 0.88 8.06 -2.91 -0.02 0.85 16 39 H 0.17 -1.11 8.14 -2.39 -0.02 -1.13 16 40 H 0.19 -2.09 8.08 -2.38 -0.02 -2.11 16 41 H 0.43 -4.65 8.83 -92.71 -0.82 -5.47 16 42 H 0.41 -0.47 8.93 -92.71 -0.83 -1.29 16 Total: -1.00 -94.87 380.29 -4.11 -98.98 By element: Atomic # 1 Polarization: 27.79 SS G_CDS: -2.74 Total: 25.04 kcal Atomic # 6 Polarization: 24.77 SS G_CDS: 6.73 Total: 31.50 kcal Atomic # 7 Polarization: -126.41 SS G_CDS: -9.96 Total: -136.37 kcal Atomic # 8 Polarization: -64.49 SS G_CDS: -0.17 Total: -64.65 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.50 kcal Total: -94.87 -4.11 -98.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001152409608.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.082 kcal (2) G-P(sol) polarization free energy of solvation -94.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -98.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds