Wall clock time and date at job start Sat Apr 11 2020 05:37:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86796 * 120.00129 * 2 1 4 4 H 1.48502 * 109.47226 * 269.99605 * 3 2 1 5 5 H 1.48498 * 109.47586 * 29.99832 * 3 2 1 6 6 H 1.48502 * 109.47166 * 150.00229 * 3 2 1 7 7 C 1.38800 * 119.99540 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00518 * 0.02562 * 7 2 1 9 9 S 1.76207 * 119.99748 * 180.02562 * 7 2 1 10 10 C 1.80993 * 99.99920 * 180.02562 * 9 7 2 11 11 C 1.50707 * 109.47344 * 179.97438 * 10 9 7 12 12 O 1.21283 * 119.99294 * 0.02562 * 11 10 9 13 13 N 1.34770 * 120.00105 * 180.02562 * 11 10 9 14 14 C 1.46499 * 119.99773 * 180.27891 * 13 11 10 15 15 C 1.52997 * 109.47205 * 179.72447 * 14 13 11 16 16 C 1.53005 * 109.47519 * 175.50043 * 15 14 13 17 17 C 1.52996 * 115.54948 * 279.63637 * 16 15 14 18 18 N 1.46899 * 109.47197 * 295.10748 * 17 16 15 19 19 C 1.46899 * 111.00174 * 185.45034 * 18 17 16 20 20 C 1.50701 * 109.47278 * 179.97438 * 19 18 17 21 21 C 1.41380 * 126.79765 * 94.71098 * 20 19 18 22 22 C 1.35455 * 103.97883 * 179.88998 * 21 20 19 23 23 O 1.34039 * 106.44835 * 0.36765 * 22 21 20 24 24 N 1.20920 * 111.56559 * 359.75016 * 23 22 21 25 25 C 1.53001 * 117.49858 * 133.92555 * 16 15 14 26 26 C 1.52998 * 117.49400 * 65.30305 * 16 15 14 27 27 H 0.97005 * 119.99506 * 0.02562 * 1 2 3 28 28 H 1.09000 * 109.47056 * 60.00011 * 10 9 7 29 29 H 1.09002 * 109.47220 * 300.00112 * 10 9 7 30 30 H 0.96997 * 120.00353 * 359.97438 * 13 11 10 31 31 H 1.09004 * 109.47124 * 299.71718 * 14 13 11 32 32 H 1.08998 * 109.47630 * 59.72258 * 14 13 11 33 33 H 1.09004 * 109.47411 * 295.49907 * 15 14 13 34 34 H 1.09002 * 109.47306 * 55.50374 * 15 14 13 35 35 H 1.09011 * 109.47184 * 55.10547 * 17 16 15 36 36 H 1.09000 * 109.47256 * 175.10166 * 17 16 15 37 37 H 1.00896 * 111.00048 * 61.49625 * 18 17 16 38 38 H 1.09004 * 109.47358 * 300.00240 * 19 18 17 39 39 H 1.09004 * 109.47138 * 59.99899 * 19 18 17 40 40 H 1.07996 * 128.01238 * 0.02562 * 21 20 19 41 41 H 1.08004 * 126.77387 * 180.10215 * 22 21 20 42 42 H 1.09000 * 117.49986 * 0.02562 * 25 16 15 43 43 H 1.08997 * 117.49327 * 145.02470 * 25 16 15 44 44 H 1.09003 * 117.49557 * 214.97835 * 26 16 15 45 45 H 1.08997 * 117.50548 * 0.02562 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4980 2.0463 -1.4001 5 1 1.4479 2.6527 0.7000 6 1 3.5479 1.4401 0.7000 7 6 2.0102 -1.2021 0.0005 8 1 1.4702 -2.1374 0.0005 9 16 3.7723 -1.2022 0.0012 10 6 4.0865 -2.9846 0.0009 11 6 5.5730 -3.2327 0.0008 12 8 6.3440 -2.2965 0.0014 13 7 6.0455 -4.4949 0.0001 14 6 7.4905 -4.7360 0.0062 15 6 7.7561 -6.2427 0.0109 16 6 9.2614 -6.4957 -0.0960 17 6 9.8483 -6.3988 -1.5055 18 7 9.2853 -7.4649 -2.3448 19 6 9.9215 -7.4840 -3.6688 20 6 9.3199 -8.5884 -4.4992 21 6 8.2559 -8.4701 -5.4226 22 6 8.0961 -9.7274 -5.9006 23 8 9.0052 -10.4892 -5.2761 24 7 9.6733 -9.8412 -4.5042 25 6 9.8740 -7.5252 0.8557 26 6 10.1397 -6.0335 1.0684 27 1 -0.4850 0.8401 -0.0004 28 1 3.6439 -3.4314 -0.8893 29 1 3.6432 -3.4319 0.8907 30 1 5.4289 -5.2436 0.0000 31 1 7.9368 -4.2913 -0.8833 32 1 7.9302 -4.2868 0.8967 33 1 7.3800 -6.6752 0.9381 34 1 7.2493 -6.7037 -0.8369 35 1 9.6009 -5.4284 -1.9363 36 1 10.9316 -6.5089 -1.4564 37 1 8.2841 -7.3704 -2.4261 38 1 9.7588 -6.5267 -4.1640 39 1 10.9917 -7.6570 -3.5552 40 1 7.7008 -7.5824 -5.6875 41 1 7.3753 -10.0528 -6.6361 42 1 9.2047 -8.0226 1.5576 43 1 10.6954 -8.1338 0.4776 44 1 11.1359 -5.6608 0.8302 45 1 9.6453 -5.5496 1.9107 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163487165.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:58 Heat of formation + Delta-G solvation = 45.206155 kcal Electronic energy + Delta-G solvation = -25540.757145 eV Core-core repulsion = 21688.560517 eV Total energy + Delta-G solvation = -3852.196629 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -45.31797 -39.64022 -38.82822 -36.48404 -34.76903 -33.79340 -32.45524 -32.02886 -30.96998 -28.85676 -28.06006 -25.63707 -24.71057 -23.73720 -23.46313 -22.40147 -21.49100 -20.60068 -19.21761 -18.17114 -17.92155 -17.81725 -16.70741 -16.47063 -16.05631 -15.73300 -15.52301 -15.15380 -15.01465 -14.96223 -14.47428 -14.11702 -13.88892 -13.75038 -13.55375 -13.30524 -12.81691 -12.72939 -12.56425 -12.32554 -12.29983 -11.81315 -11.66562 -11.63717 -11.30618 -11.26975 -11.02418 -10.68100 -10.64118 -10.48014 -10.12072 -10.03223 -9.86785 -9.53150 -9.04329 -8.99238 -8.87976 -8.51884 -6.93688 -6.30600 -4.02409 1.11695 1.76907 2.74627 2.87267 2.96101 3.24022 3.31310 3.36995 3.49134 3.64106 3.70050 3.90314 4.19106 4.31438 4.34252 4.38136 4.60941 4.63931 4.71719 4.74016 4.83499 4.88799 4.97990 5.06351 5.08488 5.16210 5.19013 5.24431 5.29743 5.36633 5.37890 5.43107 5.57425 5.65517 5.72336 5.77216 5.87518 5.88776 5.92655 5.99326 6.42763 6.51541 6.84147 7.59139 7.88550 7.92515 8.39923 8.47551 9.15573 10.78591 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.012616 B = 0.001966 C = 0.001774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2218.893922 B =14241.529415 C =15777.892017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.095 3.905 3 Si 0.857 3.143 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.235 1.235 7 C -0.521 4.521 8 H 0.088 0.912 9 S -0.142 6.142 10 C -0.124 4.124 11 C 0.530 3.470 12 O -0.520 6.520 13 N -0.738 5.738 14 C 0.124 3.876 15 C -0.092 4.092 16 C -0.120 4.120 17 C 0.096 3.904 18 N -0.679 5.679 19 C 0.137 3.863 20 C 0.016 3.984 21 C -0.232 4.232 22 C -0.059 4.059 23 O 0.100 5.900 24 N -0.347 5.347 25 C -0.156 4.156 26 C -0.171 4.171 27 H 0.271 0.729 28 H 0.096 0.904 29 H 0.097 0.903 30 H 0.399 0.601 31 H 0.063 0.937 32 H 0.067 0.933 33 H 0.073 0.927 34 H 0.072 0.928 35 H 0.042 0.958 36 H 0.076 0.924 37 H 0.344 0.656 38 H 0.056 0.944 39 H 0.090 0.910 40 H 0.171 0.829 41 H 0.217 0.783 42 H 0.093 0.907 43 H 0.095 0.905 44 H 0.095 0.905 45 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.034 -20.839 -7.562 29.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.114 4.114 3 Si 0.682 3.318 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.159 1.159 7 C -0.669 4.669 8 H 0.106 0.894 9 S 0.084 5.916 10 C -0.275 4.275 11 C 0.315 3.685 12 O -0.395 6.395 13 N -0.393 5.393 14 C 0.000 4.000 15 C -0.130 4.130 16 C -0.121 4.121 17 C -0.032 4.032 18 N -0.312 5.312 19 C 0.007 3.993 20 C -0.143 4.143 21 C -0.254 4.254 22 C -0.140 4.140 23 O 0.032 5.968 24 N -0.049 5.049 25 C -0.193 4.193 26 C -0.208 4.208 27 H 0.081 0.919 28 H 0.114 0.886 29 H 0.115 0.885 30 H 0.233 0.767 31 H 0.082 0.918 32 H 0.085 0.915 33 H 0.092 0.908 34 H 0.091 0.909 35 H 0.060 0.940 36 H 0.095 0.905 37 H 0.163 0.837 38 H 0.074 0.926 39 H 0.108 0.892 40 H 0.189 0.811 41 H 0.233 0.767 42 H 0.111 0.889 43 H 0.114 0.886 44 H 0.113 0.887 45 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 22.518 -20.347 -6.648 31.069 hybrid contribution -2.223 0.723 -0.860 2.491 sum 20.296 -19.624 -7.509 29.213 Atomic orbital electron populations 1.69943 1.05905 1.27766 1.48054 1.24722 0.94468 0.98986 0.93196 0.86728 0.81899 0.83262 0.79922 1.19221 1.19928 1.15925 1.22316 0.88257 0.97531 1.58781 0.89387 1.84792 1.09291 1.00104 1.97426 1.23283 0.94073 1.04362 1.05778 1.20283 0.90572 0.82328 0.75273 1.90700 1.58815 1.42224 1.47720 1.45988 1.07573 1.08027 1.77690 1.21255 0.81200 0.95134 1.02421 1.21295 0.93518 0.95235 1.02978 1.21200 0.93607 1.05973 0.91283 1.21450 0.99074 0.92098 0.90607 1.60360 1.09706 1.49151 1.11939 1.20152 0.99117 0.92527 0.87486 1.23477 0.97710 0.93261 0.99900 1.22821 1.01443 0.99774 1.01336 1.26056 0.96533 0.90781 1.00645 1.84872 1.35812 1.35717 1.40382 1.73873 1.15582 1.06247 1.09238 1.22968 1.03068 0.91804 1.01455 1.23062 1.00622 0.97764 0.99394 0.91937 0.88557 0.88466 0.76736 0.91842 0.91508 0.90829 0.90934 0.94034 0.90529 0.83671 0.92596 0.89211 0.81102 0.76654 0.88875 0.88611 0.88677 0.88375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.44 13.97 55.49 0.78 -25.67 16 2 C 0.09 2.77 5.50 -17.43 -0.10 2.67 16 3 Si 0.86 21.71 27.74 -169.99 -4.72 17.00 16 4 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.24 -5.96 6.74 56.52 0.38 -5.58 16 7 C -0.52 -14.94 10.04 30.94 0.31 -14.63 16 8 H 0.09 2.62 8.03 -52.49 -0.42 2.20 16 9 S -0.14 -3.60 18.55 -107.50 -1.99 -5.59 16 10 C -0.12 -2.37 6.16 36.01 0.22 -2.15 16 11 C 0.53 9.25 7.85 -10.99 -0.09 9.16 16 12 O -0.52 -11.16 15.86 5.56 0.09 -11.07 16 13 N -0.74 -9.00 5.56 -60.29 -0.33 -9.33 16 14 C 0.12 1.31 5.51 -4.04 -0.02 1.28 16 15 C -0.09 -0.70 5.24 -26.73 -0.14 -0.84 16 16 C -0.12 -0.87 1.72 -154.51 -0.27 -1.14 16 17 C 0.10 0.68 5.55 -3.83 -0.02 0.66 16 18 N -0.68 -5.07 6.46 -115.05 -0.74 -5.81 16 19 C 0.14 0.98 6.26 -4.98 -0.03 0.95 16 20 C 0.02 0.13 6.84 -82.10 -0.56 -0.43 16 21 C -0.23 -1.45 11.12 -39.38 -0.44 -1.88 16 22 C -0.06 -0.31 12.30 29.74 0.37 0.06 16 23 O 0.10 0.84 11.20 17.18 0.19 1.03 16 24 N -0.35 -3.51 12.07 33.42 0.40 -3.11 16 25 C -0.16 -1.12 9.90 -26.73 -0.26 -1.38 16 26 C -0.17 -1.22 9.58 -26.73 -0.26 -1.48 16 27 H 0.27 7.55 8.31 -40.82 -0.34 7.22 16 28 H 0.10 1.69 8.14 -51.92 -0.42 1.27 16 29 H 0.10 1.72 8.14 -51.92 -0.42 1.30 16 30 H 0.40 3.71 8.47 -40.82 -0.35 3.36 16 31 H 0.06 0.73 7.67 -51.93 -0.40 0.33 16 32 H 0.07 0.78 7.83 -51.93 -0.41 0.38 16 33 H 0.07 0.54 7.94 -51.93 -0.41 0.13 16 34 H 0.07 0.51 6.78 -51.93 -0.35 0.15 16 35 H 0.04 0.31 7.67 -51.92 -0.40 -0.09 16 36 H 0.08 0.52 8.08 -51.93 -0.42 0.10 16 37 H 0.34 2.50 7.40 -39.29 -0.29 2.21 16 38 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 39 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.17 0.73 8.06 -52.49 -0.42 0.31 16 41 H 0.22 0.21 8.06 -52.48 -0.42 -0.21 16 42 H 0.09 0.65 8.08 -51.93 -0.42 0.23 16 43 H 0.10 0.71 8.14 -51.93 -0.42 0.28 16 44 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 45 H 0.10 0.73 8.00 -51.93 -0.42 0.32 16 LS Contribution 395.15 15.07 5.95 5.95 Total: -1.00 -35.56 395.15 -8.48 -44.03 By element: Atomic # 1 Polarization: 8.52 SS G_CDS: -6.82 Total: 1.71 kcal Atomic # 6 Polarization: -7.86 SS G_CDS: -1.28 Total: -9.14 kcal Atomic # 7 Polarization: -44.02 SS G_CDS: 0.10 Total: -43.92 kcal Atomic # 8 Polarization: -10.32 SS G_CDS: 0.28 Total: -10.04 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -4.72 Total: 17.00 kcal Atomic # 16 Polarization: -3.60 SS G_CDS: -1.99 Total: -5.59 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -35.56 -8.48 -44.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163487165.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.241 kcal (2) G-P(sol) polarization free energy of solvation -35.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.035 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds