Wall clock time and date at job start Sat Apr 11 2020 05:37:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86796 * 120.00129 * 2 1 4 4 H 1.48502 * 109.47226 * 269.99605 * 3 2 1 5 5 H 1.48498 * 109.47586 * 29.99832 * 3 2 1 6 6 H 1.48502 * 109.47166 * 150.00229 * 3 2 1 7 7 C 1.38800 * 119.99540 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00518 * 0.02562 * 7 2 1 9 9 S 1.76207 * 119.99748 * 180.02562 * 7 2 1 10 10 C 1.80993 * 99.99920 * 180.02562 * 9 7 2 11 11 C 1.50707 * 109.47344 * 179.97438 * 10 9 7 12 12 O 1.21283 * 119.99294 * 0.02562 * 11 10 9 13 13 N 1.34770 * 120.00105 * 180.02562 * 11 10 9 14 14 C 1.46499 * 119.99773 * 180.27891 * 13 11 10 15 15 C 1.52997 * 109.47205 * 179.72447 * 14 13 11 16 16 C 1.53005 * 109.47519 * 175.50043 * 15 14 13 17 17 C 1.52996 * 115.54948 * 279.63637 * 16 15 14 18 18 N 1.46899 * 109.47197 * 295.10748 * 17 16 15 19 19 C 1.46899 * 111.00174 * 185.45034 * 18 17 16 20 20 C 1.50701 * 109.47278 * 179.97438 * 19 18 17 21 21 C 1.41380 * 126.79765 * 94.71098 * 20 19 18 22 22 C 1.35455 * 103.97883 * 179.88998 * 21 20 19 23 23 O 1.34039 * 106.44835 * 0.36765 * 22 21 20 24 24 N 1.20920 * 111.56559 * 359.75016 * 23 22 21 25 25 C 1.53001 * 117.49858 * 133.92555 * 16 15 14 26 26 C 1.52998 * 117.49400 * 65.30305 * 16 15 14 27 27 H 0.97005 * 119.99506 * 0.02562 * 1 2 3 28 28 H 1.09000 * 109.47056 * 60.00011 * 10 9 7 29 29 H 1.09002 * 109.47220 * 300.00112 * 10 9 7 30 30 H 0.96997 * 120.00353 * 359.97438 * 13 11 10 31 31 H 1.09004 * 109.47124 * 299.71718 * 14 13 11 32 32 H 1.08998 * 109.47630 * 59.72258 * 14 13 11 33 33 H 1.09004 * 109.47411 * 295.49907 * 15 14 13 34 34 H 1.09002 * 109.47306 * 55.50374 * 15 14 13 35 35 H 1.09011 * 109.47184 * 55.10547 * 17 16 15 36 36 H 1.09000 * 109.47256 * 175.10166 * 17 16 15 37 37 H 1.00896 * 111.00048 * 61.49625 * 18 17 16 38 38 H 1.09004 * 109.47358 * 300.00240 * 19 18 17 39 39 H 1.09004 * 109.47138 * 59.99899 * 19 18 17 40 40 H 1.07996 * 128.01238 * 0.02562 * 21 20 19 41 41 H 1.08004 * 126.77387 * 180.10215 * 22 21 20 42 42 H 1.09000 * 117.49986 * 0.02562 * 25 16 15 43 43 H 1.08997 * 117.49327 * 145.02470 * 25 16 15 44 44 H 1.09003 * 117.49557 * 214.97835 * 26 16 15 45 45 H 1.08997 * 117.50548 * 0.02562 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4980 2.0463 -1.4001 5 1 1.4479 2.6527 0.7000 6 1 3.5479 1.4401 0.7000 7 6 2.0102 -1.2021 0.0005 8 1 1.4702 -2.1374 0.0005 9 16 3.7723 -1.2022 0.0012 10 6 4.0865 -2.9846 0.0009 11 6 5.5730 -3.2327 0.0008 12 8 6.3440 -2.2965 0.0014 13 7 6.0455 -4.4949 0.0001 14 6 7.4905 -4.7360 0.0062 15 6 7.7561 -6.2427 0.0109 16 6 9.2614 -6.4957 -0.0960 17 6 9.8483 -6.3988 -1.5055 18 7 9.2853 -7.4649 -2.3448 19 6 9.9215 -7.4840 -3.6688 20 6 9.3199 -8.5884 -4.4992 21 6 8.2559 -8.4701 -5.4226 22 6 8.0961 -9.7274 -5.9006 23 8 9.0052 -10.4892 -5.2761 24 7 9.6733 -9.8412 -4.5042 25 6 9.8740 -7.5252 0.8557 26 6 10.1397 -6.0335 1.0684 27 1 -0.4850 0.8401 -0.0004 28 1 3.6439 -3.4314 -0.8893 29 1 3.6432 -3.4319 0.8907 30 1 5.4289 -5.2436 0.0000 31 1 7.9368 -4.2913 -0.8833 32 1 7.9302 -4.2868 0.8967 33 1 7.3800 -6.6752 0.9381 34 1 7.2493 -6.7037 -0.8369 35 1 9.6009 -5.4284 -1.9363 36 1 10.9316 -6.5089 -1.4564 37 1 8.2841 -7.3704 -2.4261 38 1 9.7588 -6.5267 -4.1640 39 1 10.9917 -7.6570 -3.5552 40 1 7.7008 -7.5824 -5.6875 41 1 7.3753 -10.0528 -6.6361 42 1 9.2047 -8.0226 1.5576 43 1 10.6954 -8.1338 0.4776 44 1 11.1359 -5.6608 0.8302 45 1 9.6453 -5.5496 1.9107 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163487165.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:57 Heat of formation + Delta-G solvation = 19.654453 kcal Electronic energy + Delta-G solvation = -25541.865150 eV Core-core repulsion = 21688.560517 eV Total energy + Delta-G solvation = -3853.304634 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -45.86957 -40.75002 -39.68699 -37.06558 -35.88759 -34.67100 -34.32695 -32.54476 -32.13139 -29.97550 -28.72968 -27.84770 -25.29198 -24.55922 -23.97758 -23.03151 -21.99793 -21.86013 -20.12574 -19.60863 -18.67000 -18.49902 -17.82149 -17.32472 -17.28137 -17.01876 -16.69809 -16.38602 -15.82074 -15.70093 -15.55389 -15.14261 -14.95468 -14.84503 -14.68313 -14.24724 -14.18855 -13.64198 -13.35263 -13.30982 -13.09731 -13.07367 -13.02001 -12.67203 -12.56191 -12.28748 -12.20857 -11.96720 -11.85949 -11.23666 -11.17176 -11.13000 -10.95648 -10.66720 -10.54371 -10.53413 -10.13779 -9.45163 -8.99708 -8.51609 -6.22362 0.64586 0.99285 1.26135 1.31180 1.46909 1.56086 1.56738 2.21844 2.26303 2.47985 2.70891 2.76705 2.86577 3.17955 3.36474 3.69305 3.74451 3.78895 3.88546 3.96915 4.10175 4.21946 4.23546 4.31212 4.35186 4.39934 4.44858 4.47324 4.59666 4.62152 4.71278 4.74995 4.85163 4.86470 5.05088 5.08540 5.13999 5.15542 5.28693 5.32228 5.42961 5.70787 5.87680 6.11550 6.30364 6.47418 6.93632 7.19835 7.38009 8.60667 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.012616 B = 0.001966 C = 0.001774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2218.893922 B =14241.529415 C =15777.892017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.044 3.956 3 Si 0.915 3.085 4 H -0.262 1.262 5 H -0.260 1.260 6 H -0.237 1.237 7 C -0.528 4.528 8 H 0.063 0.937 9 S -0.177 6.177 10 C -0.112 4.112 11 C 0.534 3.466 12 O -0.564 6.564 13 N -0.712 5.712 14 C 0.126 3.874 15 C -0.081 4.081 16 C -0.122 4.122 17 C 0.100 3.900 18 N -0.683 5.683 19 C 0.138 3.862 20 C 0.004 3.996 21 C -0.243 4.243 22 C -0.045 4.045 23 O 0.085 5.915 24 N -0.387 5.387 25 C -0.153 4.153 26 C -0.172 4.172 27 H 0.277 0.723 28 H 0.114 0.886 29 H 0.113 0.887 30 H 0.417 0.583 31 H 0.057 0.943 32 H 0.057 0.943 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.039 0.961 36 H 0.077 0.923 37 H 0.346 0.654 38 H 0.068 0.932 39 H 0.083 0.917 40 H 0.190 0.810 41 H 0.258 0.742 42 H 0.097 0.903 43 H 0.093 0.907 44 H 0.099 0.901 45 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.599 -21.656 -8.085 30.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.161 4.161 3 Si 0.737 3.263 4 H -0.187 1.187 5 H -0.184 1.184 6 H -0.161 1.161 7 C -0.676 4.676 8 H 0.081 0.919 9 S 0.049 5.951 10 C -0.262 4.262 11 C 0.319 3.681 12 O -0.443 6.443 13 N -0.366 5.366 14 C 0.003 3.997 15 C -0.119 4.119 16 C -0.123 4.123 17 C -0.029 4.029 18 N -0.316 5.316 19 C 0.009 3.991 20 C -0.155 4.155 21 C -0.265 4.265 22 C -0.126 4.126 23 O 0.020 5.980 24 N -0.092 5.092 25 C -0.190 4.190 26 C -0.210 4.210 27 H 0.086 0.914 28 H 0.133 0.867 29 H 0.132 0.868 30 H 0.254 0.746 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.100 0.900 34 H 0.102 0.898 35 H 0.057 0.943 36 H 0.096 0.904 37 H 0.165 0.835 38 H 0.086 0.914 39 H 0.101 0.899 40 H 0.207 0.793 41 H 0.274 0.726 42 H 0.115 0.885 43 H 0.111 0.889 44 H 0.118 0.882 45 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 23.073 -21.232 -7.176 32.166 hybrid contribution -2.382 0.796 -0.732 2.616 sum 20.691 -20.436 -7.908 30.138 Atomic orbital electron populations 1.70020 1.07271 1.29003 1.49152 1.25574 0.95297 1.02277 0.92955 0.85863 0.80655 0.79614 0.80217 1.18660 1.18396 1.16119 1.22459 0.90223 0.96687 1.58183 0.91884 1.84728 1.06450 1.06332 1.97589 1.23278 0.95935 0.99530 1.07503 1.19964 0.89372 0.83440 0.75305 1.90692 1.59372 1.43913 1.50316 1.45762 1.08881 1.06744 1.75216 1.21344 0.79536 0.97159 1.01663 1.21208 0.93876 0.92842 1.03935 1.21197 0.93416 1.06230 0.91425 1.21409 0.99136 0.91872 0.90446 1.60343 1.09820 1.49288 1.12187 1.20153 0.98685 0.92822 0.87450 1.23803 0.98279 0.93043 1.00348 1.23122 1.01262 1.00970 1.01165 1.26854 0.95627 0.90196 0.99947 1.84819 1.36446 1.36204 1.40575 1.73870 1.17208 1.07219 1.10881 1.22960 1.02979 0.91737 1.01293 1.23092 1.00863 0.97821 0.99217 0.91379 0.86742 0.86839 0.74627 0.92511 0.92456 0.89982 0.89810 0.94264 0.90447 0.83516 0.91377 0.89861 0.79273 0.72640 0.88475 0.88878 0.88237 0.88620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.42 13.97 21.65 0.30 -55.12 16 2 C 0.04 2.59 5.50 84.86 0.47 3.05 16 3 Si 0.91 44.71 27.74 68.60 1.90 46.62 16 4 H -0.26 -12.47 7.11 99.48 0.71 -11.76 16 5 H -0.26 -11.92 7.11 99.48 0.71 -11.21 16 6 H -0.24 -11.60 6.74 99.48 0.67 -10.93 16 7 C -0.53 -30.43 10.04 67.95 0.68 -29.74 16 8 H 0.06 3.82 8.03 -2.91 -0.02 3.80 16 9 S -0.18 -8.86 18.55 -56.49 -1.05 -9.91 16 10 C -0.11 -4.07 6.16 71.24 0.44 -3.63 16 11 C 0.53 17.70 7.85 87.66 0.69 18.39 16 12 O -0.56 -23.72 15.86 -3.04 -0.05 -23.77 16 13 N -0.71 -15.56 5.56 -463.06 -2.57 -18.13 16 14 C 0.13 2.41 5.51 86.38 0.48 2.89 16 15 C -0.08 -1.02 5.24 30.60 0.16 -0.86 16 16 C -0.12 -1.56 1.72 -52.18 -0.09 -1.65 16 17 C 0.10 1.28 5.55 86.30 0.48 1.76 16 18 N -0.68 -9.33 6.46 -517.92 -3.34 -12.67 16 19 C 0.14 1.87 6.26 85.56 0.54 2.40 16 20 C 0.00 0.07 6.84 43.58 0.30 0.37 16 21 C -0.24 -2.60 11.12 22.40 0.25 -2.35 16 22 C -0.05 -0.38 12.30 67.18 0.83 0.44 16 23 O 0.09 1.36 11.20 71.65 0.80 2.16 16 24 N -0.39 -7.75 12.07 -49.57 -0.60 -8.35 16 25 C -0.15 -1.95 9.90 30.60 0.30 -1.64 16 26 C -0.17 -2.23 9.58 30.60 0.29 -1.93 16 27 H 0.28 15.47 8.31 -92.70 -0.77 14.70 16 28 H 0.11 3.78 8.14 -2.40 -0.02 3.76 16 29 H 0.11 3.80 8.14 -2.39 -0.02 3.78 16 30 H 0.42 6.34 8.47 -92.71 -0.79 5.55 16 31 H 0.06 1.21 7.67 -2.38 -0.02 1.19 16 32 H 0.06 1.26 7.83 -2.39 -0.02 1.24 16 33 H 0.08 0.95 7.94 -2.38 -0.02 0.93 16 34 H 0.08 0.91 6.78 -2.39 -0.02 0.90 16 35 H 0.04 0.53 7.67 -2.38 -0.02 0.51 16 36 H 0.08 0.98 8.08 -2.39 -0.02 0.96 16 37 H 0.35 4.41 7.40 -89.70 -0.66 3.75 16 38 H 0.07 0.73 8.14 -2.38 -0.02 0.71 16 39 H 0.08 1.20 8.14 -2.38 -0.02 1.18 16 40 H 0.19 1.17 8.06 -2.91 -0.02 1.15 16 41 H 0.26 -0.38 8.06 -2.91 -0.02 -0.40 16 42 H 0.10 1.17 8.08 -2.39 -0.02 1.15 16 43 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 44 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 45 H 0.10 1.30 8.00 -2.39 -0.02 1.28 16 Total: -1.00 -77.76 395.15 0.73 -77.03 By element: Atomic # 1 Polarization: 15.11 SS G_CDS: -0.47 Total: 14.64 kcal Atomic # 6 Polarization: -18.31 SS G_CDS: 5.81 Total: -12.51 kcal Atomic # 7 Polarization: -88.06 SS G_CDS: -6.21 Total: -94.27 kcal Atomic # 8 Polarization: -22.36 SS G_CDS: 0.75 Total: -21.60 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 1.90 Total: 46.62 kcal Atomic # 16 Polarization: -8.86 SS G_CDS: -1.05 Total: -9.91 kcal Total: -77.76 0.73 -77.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163487165.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.688 kcal (2) G-P(sol) polarization free energy of solvation -77.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.033 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds