Wall clock time and date at job start Sat Apr 11 2020 05:38:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30867 * 1 3 3 Si 1.86799 * 119.99827 * 2 1 4 4 H 1.48497 * 109.47236 * 239.99753 * 3 2 1 5 5 H 1.48489 * 109.47312 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46628 * 120.00575 * 3 2 1 7 7 C 1.39950 * 119.99889 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99714 * 163.59000 * 7 2 1 9 9 C 1.41018 * 119.99904 * 343.58546 * 7 2 1 10 10 C 1.41006 * 120.70667 * 334.92293 * 9 7 2 11 11 C 1.38017 * 118.27912 * 180.24561 * 10 9 7 12 12 C 1.38679 * 119.62520 * 359.74532 * 11 10 9 13 13 N 1.31967 * 121.45161 * 0.02562 * 12 11 10 14 14 C 1.32274 * 121.86558 * 359.97438 * 13 12 11 15 15 N 1.38094 * 119.90647 * 179.97438 * 14 13 12 16 16 C 1.46496 * 119.99848 * 359.97438 * 15 14 13 17 17 C 1.57114 * 119.80574 * 249.74066 * 16 15 14 18 18 C 1.52998 * 59.65223 * 248.67588 * 17 16 15 19 19 H 1.09003 * 119.54048 * 112.45587 * 18 17 16 20 20 C 1.54396 * 118.12395 * 267.53995 * 18 17 16 21 21 N 1.48140 * 104.61266 * 89.21162 * 20 18 17 22 22 C 1.34782 * 127.83780 * 140.41796 * 21 20 18 23 23 O 1.21688 * 120.00273 * 180.02562 * 22 21 20 24 24 C 1.46656 * 119.99604 * 0.02562 * 22 21 20 25 25 C 1.36547 * 125.98540 * 180.02562 * 24 22 21 26 26 C 1.40375 * 106.70656 * 180.02562 * 25 24 22 27 27 C 1.35125 * 107.11348 * 0.26143 * 26 25 24 28 28 O 1.33936 * 108.76965 * 359.57444 * 27 26 25 29 29 C 1.48142 * 104.32761 * 320.67555 * 21 20 18 30 30 H 0.97000 * 120.00243 * 359.97438 * 1 2 3 31 31 H 1.07997 * 120.86052 * 359.97096 * 10 9 7 32 32 H 1.07994 * 120.18228 * 179.76734 * 11 10 9 33 33 H 1.08001 * 119.27314 * 180.02562 * 12 11 10 34 34 H 0.96997 * 119.99839 * 180.02562 * 15 14 13 35 35 H 1.09001 * 118.46747 * 141.81711 * 17 16 15 36 36 H 1.09000 * 116.95844 * 356.22007 * 17 16 15 37 37 H 1.08999 * 110.40256 * 330.42990 * 20 18 17 38 38 H 1.09001 * 110.50615 * 208.04672 * 20 18 17 39 39 H 1.07996 * 126.64947 * 0.03137 * 25 24 22 40 40 H 1.07999 * 126.43995 * 180.02562 * 26 25 24 41 41 H 1.08002 * 125.61607 * 179.73678 * 27 26 25 42 42 H 1.09005 * 110.41092 * 158.11229 * 29 21 20 43 43 H 1.09004 * 110.40447 * 280.54334 * 29 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2426 1.6178 0.0000 4 1 3.0964 1.6964 -1.2124 5 1 1.2777 2.7464 0.0006 6 1 3.0964 1.6963 1.2125 7 6 2.0084 -1.2120 -0.0005 8 1 3.0554 -1.2309 -0.2648 9 6 1.3464 -2.4085 0.3440 10 6 0.2025 -2.3869 1.1683 11 6 -0.4029 -3.5878 1.4782 12 6 0.1191 -4.7692 0.9732 13 7 1.1878 -4.7742 0.1990 14 6 1.8137 -3.6577 -0.1347 15 7 2.9291 -3.7101 -0.9472 16 6 3.4179 -5.0011 -1.4378 17 6 4.7747 -5.5793 -0.8963 18 6 4.6594 -5.1082 -2.3474 19 1 5.2122 -4.2265 -2.6717 20 6 4.2775 -6.1488 -3.4222 21 7 2.7970 -6.1186 -3.4622 22 6 1.9974 -6.1946 -4.5445 23 8 0.7884 -6.1551 -4.4119 24 6 2.5845 -6.3248 -5.8821 25 6 1.8935 -6.4107 -7.0567 26 6 2.8485 -6.5228 -8.0794 27 6 4.0649 -6.5064 -7.4911 28 8 3.9019 -6.3812 -6.1677 29 6 2.3947 -5.9796 -2.0432 30 1 -0.4850 0.8400 0.0004 31 1 -0.1870 -1.4551 1.5509 32 1 -1.2785 -3.6073 2.1101 33 1 -0.3594 -5.7056 1.2190 34 1 3.3893 -2.8923 -1.1924 35 1 4.8490 -6.6525 -0.7210 36 1 5.3398 -4.9512 -0.2076 37 1 4.6299 -7.1393 -3.1343 38 1 4.6898 -5.8662 -4.3908 39 1 0.8203 -6.3954 -7.1759 40 1 2.6485 -6.6099 -9.1371 41 1 5.0126 -6.5794 -8.0040 42 1 1.3880 -5.5676 -1.9721 43 1 2.4485 -6.9434 -1.5368 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163628801.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:03 Heat of formation + Delta-G solvation = 71.776542 kcal Electronic energy + Delta-G solvation = -28913.654848 eV Core-core repulsion = 24927.166446 eV Total energy + Delta-G solvation = -3986.488402 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.82749 -40.16744 -38.54390 -37.89946 -34.32287 -33.98415 -33.23826 -32.51827 -30.46350 -30.19213 -28.66516 -27.54345 -26.30372 -25.37167 -22.86267 -21.98967 -21.77116 -21.39603 -20.66981 -19.95229 -19.19923 -17.80609 -17.26881 -16.78331 -16.50578 -16.35335 -15.67392 -15.53471 -15.23511 -14.94338 -14.12069 -13.91512 -13.69510 -13.62982 -13.32127 -13.14142 -13.04281 -12.90906 -12.80286 -12.48310 -12.01559 -11.89097 -11.65708 -11.51907 -11.40411 -11.34178 -10.93140 -10.59189 -10.43973 -10.34836 -10.23393 -9.97610 -9.74308 -9.31308 -8.95391 -8.81621 -8.59413 -8.11398 -7.89581 -6.83147 -6.55016 -4.27410 0.96645 2.19635 2.48742 2.73099 3.00763 3.03745 3.04775 3.07161 3.19886 3.21913 3.69425 3.89849 4.06960 4.43329 4.64140 4.67532 4.71810 4.78777 4.83387 5.03639 5.21874 5.39229 5.50536 5.55128 5.59897 5.72254 5.74804 5.78714 5.93053 6.07740 6.13602 6.14471 6.21210 6.28673 6.43281 6.50369 6.70725 6.74216 6.84656 7.08890 7.15880 7.51960 7.63048 7.78115 7.96544 8.07783 8.22951 8.41975 8.61134 8.75781 8.94341 9.73823 10.18357 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.012010 B = 0.003311 C = 0.003101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2330.739904 B = 8453.881916 C = 9026.577257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.796 5.796 2 C 0.076 3.924 3 Si 0.907 3.093 4 H -0.267 1.267 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.459 4.459 8 H 0.073 0.927 9 C 0.037 3.963 10 C -0.123 4.123 11 C -0.188 4.188 12 C 0.004 3.996 13 N -0.524 5.524 14 C 0.300 3.700 15 N -0.687 5.687 16 C 0.132 3.868 17 C -0.152 4.152 18 C -0.193 4.193 19 H 0.118 0.882 20 C 0.127 3.873 21 N -0.615 5.615 22 C 0.618 3.382 23 O -0.514 6.514 24 C -0.065 4.065 25 C -0.125 4.125 26 C -0.223 4.223 27 C -0.017 4.017 28 O -0.161 6.161 29 C 0.150 3.850 30 H 0.281 0.719 31 H 0.125 0.875 32 H 0.095 0.905 33 H 0.119 0.881 34 H 0.407 0.593 35 H 0.096 0.904 36 H 0.102 0.898 37 H 0.077 0.923 38 H 0.092 0.908 39 H 0.160 0.840 40 H 0.155 0.845 41 H 0.208 0.792 42 H 0.109 0.891 43 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.497 -9.671 -10.695 17.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.422 5.422 2 C -0.141 4.141 3 Si 0.732 3.268 4 H -0.192 1.192 5 H -0.204 1.204 6 H -0.189 1.189 7 C -0.491 4.491 8 H 0.091 0.909 9 C 0.030 3.970 10 C -0.150 4.150 11 C -0.210 4.210 12 C -0.150 4.150 13 N -0.240 5.240 14 C 0.064 3.936 15 N -0.324 5.324 16 C 0.040 3.960 17 C -0.192 4.192 18 C -0.213 4.213 19 H 0.136 0.864 20 C 0.005 3.995 21 N -0.348 5.348 22 C 0.406 3.594 23 O -0.391 6.391 24 C -0.117 4.117 25 C -0.146 4.146 26 C -0.243 4.243 27 C -0.086 4.086 28 O -0.057 6.057 29 C 0.028 3.972 30 H 0.092 0.908 31 H 0.143 0.857 32 H 0.113 0.887 33 H 0.136 0.864 34 H 0.246 0.754 35 H 0.114 0.886 36 H 0.121 0.879 37 H 0.095 0.905 38 H 0.110 0.890 39 H 0.178 0.822 40 H 0.173 0.827 41 H 0.225 0.775 42 H 0.127 0.873 43 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 10.000 -10.411 -10.785 18.019 hybrid contribution 0.230 2.074 -0.100 2.089 sum 10.230 -8.337 -10.884 17.107 Atomic orbital electron populations 1.69800 1.07456 1.29239 1.35676 1.25803 0.94716 1.01027 0.92550 0.86382 0.80102 0.80520 0.79801 1.19160 1.20351 1.18923 1.19089 0.96967 0.91021 1.41984 0.90864 1.17870 0.94535 0.91123 0.93493 1.21357 0.97949 0.96795 0.98862 1.21434 1.01239 0.94357 1.03993 1.21381 0.95623 0.96211 1.01823 1.66539 1.10726 1.29587 1.17161 1.18349 0.90572 0.89856 0.94849 1.42820 1.30568 1.04238 1.54755 1.21779 0.86237 0.88862 0.99167 1.24119 1.00265 1.01257 0.93586 1.24017 1.03884 1.01913 0.91507 0.86379 1.22001 0.79788 0.98428 0.99324 1.49209 1.07365 1.71036 1.07140 1.16109 0.85350 0.77396 0.80504 1.90925 1.12596 1.51235 1.84379 1.22138 0.80826 1.12903 0.95802 1.21983 1.01480 1.00827 0.90309 1.21843 0.92155 1.09325 1.00930 1.24422 1.00609 1.03016 0.80579 1.84161 1.26127 1.70007 1.25368 1.21759 1.00226 0.98125 0.77067 0.90822 0.85703 0.88667 0.86350 0.75436 0.88600 0.87939 0.90458 0.89016 0.82225 0.82703 0.77504 0.87317 0.90021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.41 10.95 55.55 0.61 -19.80 16 2 C 0.08 1.87 5.19 -17.32 -0.09 1.78 16 3 Si 0.91 18.32 29.59 -169.99 -5.03 13.29 16 4 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 5 H -0.28 -5.55 7.11 56.52 0.40 -5.15 16 6 H -0.26 -5.30 7.11 56.52 0.40 -4.89 16 7 C -0.46 -11.62 8.52 -37.89 -0.32 -11.94 16 8 H 0.07 1.73 6.70 -52.49 -0.35 1.38 16 9 C 0.04 0.95 5.60 -106.47 -0.60 0.36 16 10 C -0.12 -3.18 8.79 -38.61 -0.34 -3.52 16 11 C -0.19 -4.42 10.08 -39.50 -0.40 -4.82 16 12 C 0.00 0.09 11.17 -17.33 -0.19 -0.11 16 13 N -0.52 -12.41 7.72 -11.86 -0.09 -12.50 16 14 C 0.30 7.25 7.23 -155.02 -1.12 6.13 16 15 N -0.69 -14.15 5.74 -44.16 -0.25 -14.41 16 16 C 0.13 2.25 3.26 -128.40 -0.42 1.83 16 17 C -0.15 -2.02 10.30 -24.50 -0.25 -2.27 16 18 C -0.19 -2.53 6.99 -89.22 -0.62 -3.16 16 19 H 0.12 1.44 8.14 -51.93 -0.42 1.02 16 20 C 0.13 1.57 6.50 -2.41 -0.02 1.55 16 21 N -0.61 -9.89 3.32 -171.10 -0.57 -10.46 16 22 C 0.62 10.76 7.88 -12.86 -0.10 10.66 16 23 O -0.51 -10.82 17.13 5.20 0.09 -10.73 16 24 C -0.06 -0.91 6.97 -36.80 -0.26 -1.17 16 25 C -0.13 -1.55 10.62 -39.39 -0.42 -1.97 16 26 C -0.22 -2.05 10.88 -39.89 -0.43 -2.48 16 27 C -0.02 -0.14 12.08 29.62 0.36 0.22 16 28 O -0.16 -1.84 7.80 4.98 0.04 -1.80 16 29 C 0.15 2.69 5.84 -2.62 -0.02 2.68 16 30 H 0.28 6.62 8.30 -40.82 -0.34 6.28 16 31 H 0.13 3.31 6.26 -52.49 -0.33 2.98 16 32 H 0.10 1.98 8.06 -52.49 -0.42 1.56 16 33 H 0.12 2.39 8.06 -52.49 -0.42 1.97 16 34 H 0.41 8.15 7.04 -40.82 -0.29 7.87 16 35 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 36 H 0.10 1.35 8.14 -51.93 -0.42 0.92 16 37 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.09 1.04 5.54 -51.93 -0.29 0.75 16 39 H 0.16 1.90 8.06 -52.49 -0.42 1.48 16 40 H 0.16 0.99 8.06 -52.49 -0.42 0.57 16 41 H 0.21 0.78 8.06 -52.49 -0.42 0.35 16 42 H 0.11 2.42 6.48 -51.93 -0.34 2.08 16 43 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 LS Contribution 362.78 15.07 5.47 5.47 Total: -1.00 -30.97 362.78 -9.93 -40.91 By element: Atomic # 1 Polarization: 21.22 SS G_CDS: -4.95 Total: 16.26 kcal Atomic # 6 Polarization: -0.99 SS G_CDS: -5.24 Total: -6.23 kcal Atomic # 7 Polarization: -56.86 SS G_CDS: -0.30 Total: -57.16 kcal Atomic # 8 Polarization: -12.66 SS G_CDS: 0.13 Total: -12.53 kcal Atomic # 14 Polarization: 18.32 SS G_CDS: -5.03 Total: 13.29 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -30.97 -9.93 -40.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163628801.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.682 kcal (2) G-P(sol) polarization free energy of solvation -30.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.906 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds