Wall clock time and date at job start Sat Apr 11 2020 05:38:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86802 * 119.99342 * 2 1 4 4 H 1.48494 * 109.47266 * 269.99819 * 3 2 1 5 5 H 1.48500 * 109.47184 * 30.00205 * 3 2 1 6 6 H 1.48504 * 109.46523 * 150.00198 * 3 2 1 7 7 C 1.38810 * 120.00438 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00056 * 179.97438 * 7 2 1 9 9 N 1.36941 * 119.99881 * 359.97438 * 7 2 1 10 10 C 1.46499 * 119.99984 * 179.97438 * 9 7 2 11 11 C 1.52993 * 109.47100 * 179.97438 * 10 9 7 12 12 C 1.53001 * 109.47149 * 179.97438 * 11 10 9 13 13 C 1.53003 * 109.47085 * 180.02562 * 12 11 10 14 14 C 1.52999 * 109.46719 * 180.02562 * 13 12 11 15 15 C 1.53005 * 109.47091 * 180.02562 * 14 13 12 16 16 N 1.46499 * 109.47411 * 180.02562 * 15 14 13 17 17 C 1.34777 * 120.00128 * 180.02562 * 16 15 14 18 18 O 1.21630 * 119.99858 * 359.97438 * 17 16 15 19 19 C 1.47168 * 120.00044 * 179.97438 * 17 16 15 20 20 C 1.36613 * 125.15813 * 179.97438 * 19 17 16 21 21 C 1.36805 * 114.74000 * 179.97438 * 20 19 17 22 22 C 1.36607 * 114.74886 * 359.97438 * 21 20 19 23 23 C 1.47164 * 125.16468 * 180.02562 * 22 21 20 24 24 N 1.34780 * 120.00027 * 180.02562 * 23 22 21 25 25 O 1.21622 * 120.00221 * 359.97438 * 23 22 21 26 26 S 1.75833 * 125.16103 * 359.94861 * 19 17 16 27 27 H 0.97000 * 120.00440 * 359.97438 * 1 2 3 28 28 H 0.96998 * 119.99763 * 0.02562 * 9 7 2 29 29 H 1.09000 * 109.46670 * 60.00305 * 10 9 7 30 30 H 1.09004 * 109.47231 * 300.00493 * 10 9 7 31 31 H 1.09004 * 109.47478 * 60.00558 * 11 10 9 32 32 H 1.09004 * 109.47585 * 300.00404 * 11 10 9 33 33 H 1.09004 * 109.47117 * 60.00339 * 12 11 10 34 34 H 1.09000 * 109.47376 * 300.00158 * 12 11 10 35 35 H 1.09000 * 109.47041 * 60.00658 * 13 12 11 36 36 H 1.08996 * 109.47310 * 299.99822 * 13 12 11 37 37 H 1.08996 * 109.47780 * 59.99963 * 14 13 12 38 38 H 1.09000 * 109.47232 * 299.99842 * 14 13 12 39 39 H 1.09004 * 109.47006 * 59.99471 * 15 14 13 40 40 H 1.09000 * 109.46631 * 299.99814 * 15 14 13 41 41 H 0.96992 * 119.99793 * 359.97438 * 16 15 14 42 42 H 1.07998 * 122.63470 * 0.22052 * 20 19 17 43 43 H 1.08003 * 122.62287 * 180.02562 * 21 20 19 44 44 H 0.96996 * 120.00509 * 0.02562 * 24 23 22 45 45 H 0.97008 * 119.99856 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 2.4975 2.0466 -1.4000 5 1 1.4474 2.6527 0.7001 6 1 3.5477 1.4403 0.7000 7 6 2.0104 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3257 -2.3881 -0.0005 10 6 2.0583 -3.6567 -0.0017 11 6 1.0642 -4.8197 -0.0008 12 6 1.8292 -6.1446 -0.0026 13 6 0.8350 -7.3076 -0.0024 14 6 1.6002 -8.6326 -0.0035 15 6 0.6060 -9.7956 -0.0039 16 7 1.3386 -11.0643 -0.0045 17 6 0.6648 -12.2316 -0.0054 18 8 -0.5515 -12.2316 -0.0053 19 6 1.4007 -13.5060 -0.0065 20 6 0.8269 -14.7458 -0.0070 21 6 1.7140 -15.7873 -0.0085 22 6 3.0292 -15.4182 -0.0099 23 6 4.1703 -16.3476 -0.0123 24 7 5.4299 -15.8681 -0.0129 25 8 3.9767 -17.5483 -0.0127 26 16 3.1519 -13.6641 -0.0080 27 1 -0.4851 0.8400 0.0004 28 1 0.3557 -2.3881 -0.0005 29 1 2.6856 -3.7148 0.8878 30 1 2.6844 -3.7140 -0.8921 31 1 0.4365 -4.7619 -0.8901 32 1 0.4384 -4.7622 0.8899 33 1 2.4572 -6.2028 0.8865 34 1 2.4546 -6.2019 -0.8935 35 1 0.2075 -7.2493 -0.8917 36 1 0.2094 -7.2506 0.8883 37 1 2.2275 -8.6907 0.8859 38 1 2.2261 -8.6899 -0.8940 39 1 -0.0211 -9.7373 -0.8936 40 1 -0.0202 -9.7385 0.8864 41 1 2.3085 -11.0642 -0.0049 42 1 -0.2431 -14.8923 -0.0101 43 1 1.3990 -16.8203 -0.0095 44 1 5.5845 -14.9105 -0.0115 45 1 6.1821 -16.4808 -0.0141 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001179816302.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:21 Heat of formation + Delta-G solvation = -55.772457 kcal Electronic energy + Delta-G solvation = -24314.758832 eV Core-core repulsion = 20458.183443 eV Total energy + Delta-G solvation = -3856.575390 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.38051 -40.08001 -37.76629 -36.85188 -35.50967 -34.46026 -34.05714 -32.09071 -30.84194 -29.86667 -27.40554 -26.06457 -24.13678 -22.62642 -22.36214 -21.87188 -21.10160 -20.69842 -19.88341 -19.30555 -17.75159 -17.27883 -16.98630 -16.51336 -16.40805 -16.03057 -15.65007 -15.38085 -15.28545 -14.66394 -14.44994 -14.39608 -13.79309 -13.51710 -13.42573 -13.35745 -13.00237 -12.91607 -12.77310 -12.42086 -11.89016 -11.80798 -11.43222 -11.24020 -10.99742 -10.95956 -10.77040 -10.75905 -10.62738 -10.49026 -10.39253 -10.29024 -9.97896 -9.74233 -9.65368 -9.47971 -9.37781 -8.85355 -6.89765 -5.74888 -3.03443 -0.60688 0.54807 0.91893 1.41959 2.41402 2.51016 2.62829 2.68708 3.44138 3.48823 3.50926 4.06756 4.17314 4.44419 4.48635 4.61811 4.65918 4.66815 4.86594 5.16305 5.22941 5.26246 5.31508 5.36869 5.51154 5.56399 5.59928 5.61649 5.64665 5.84719 5.90606 5.93428 5.99901 6.09042 6.30238 6.31294 6.39635 6.46256 6.48852 6.84683 6.89975 6.94024 7.43663 7.55947 7.70968 8.44440 9.55106 10.14661 10.49065 11.48204 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.028278 B = 0.001250 C = 0.001199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.934259 B =22396.870282 C =23345.149148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.015 4.015 3 Si 0.907 3.093 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.240 4.240 8 H 0.070 0.930 9 N -0.735 5.735 10 C 0.152 3.848 11 C -0.127 4.127 12 C -0.113 4.113 13 C -0.116 4.116 14 C -0.132 4.132 15 C 0.117 3.883 16 N -0.723 5.723 17 C 0.585 3.415 18 O -0.517 6.517 19 C -0.221 4.221 20 C -0.070 4.070 21 C -0.062 4.062 22 C -0.238 4.238 23 C 0.596 3.404 24 N -0.848 5.848 25 O -0.524 6.524 26 S 0.185 5.815 27 H 0.255 0.745 28 H 0.383 0.617 29 H 0.016 0.984 30 H 0.016 0.984 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.060 0.940 35 H 0.066 0.934 36 H 0.066 0.934 37 H 0.070 0.930 38 H 0.070 0.930 39 H 0.074 0.926 40 H 0.074 0.926 41 H 0.398 0.602 42 H 0.163 0.837 43 H 0.162 0.838 44 H 0.401 0.599 45 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.898 -35.583 -0.002 36.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.211 4.211 3 Si 0.738 3.262 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.208 1.208 7 C -0.371 4.371 8 H 0.088 0.912 9 N -0.379 5.379 10 C 0.025 3.975 11 C -0.165 4.165 12 C -0.151 4.151 13 C -0.154 4.154 14 C -0.170 4.170 15 C -0.006 4.006 16 N -0.375 5.375 17 C 0.370 3.630 18 O -0.394 6.394 19 C -0.343 4.343 20 C -0.103 4.103 21 C -0.095 4.095 22 C -0.360 4.360 23 C 0.379 3.621 24 N -0.412 5.412 25 O -0.401 6.401 26 S 0.453 5.547 27 H 0.065 0.935 28 H 0.217 0.783 29 H 0.034 0.966 30 H 0.034 0.966 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.089 0.911 38 H 0.088 0.912 39 H 0.092 0.908 40 H 0.092 0.908 41 H 0.232 0.768 42 H 0.181 0.819 43 H 0.180 0.820 44 H 0.229 0.771 45 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges 9.085 -35.105 0.007 36.262 hybrid contribution -0.079 0.267 -0.013 0.279 sum 9.005 -34.838 -0.006 35.983 Atomic orbital electron populations 1.69663 1.05126 1.25616 1.57922 1.24748 0.95533 0.97701 1.03122 0.86182 0.78631 0.83832 0.77515 1.21724 1.21741 1.20780 1.19258 0.91047 0.84295 1.42511 0.91224 1.42395 1.05907 1.00152 1.89471 1.20654 0.93650 0.85728 0.97516 1.21731 0.98898 0.93817 1.02031 1.21500 0.97853 0.93864 1.01917 1.21518 0.98453 0.92687 1.02768 1.21850 0.98240 0.93994 1.02901 1.21566 0.94990 0.80843 1.03173 1.45933 1.10193 1.05988 1.75355 1.17043 0.86867 0.82155 0.76977 1.90866 1.12561 1.86826 1.49180 1.24944 0.96648 0.98277 1.14408 1.20651 1.02496 0.89276 0.97897 1.20645 0.89963 1.01768 0.97163 1.24797 0.98235 0.96735 1.16240 1.17027 0.82265 0.87039 0.75742 1.43685 1.07525 1.12005 1.77978 1.90894 1.85017 1.14738 1.49441 1.83855 1.02547 0.99897 1.68431 0.93532 0.78332 0.96604 0.96608 0.92072 0.92059 0.92074 0.92078 0.91509 0.91516 0.91142 0.91151 0.90765 0.90774 0.76780 0.81913 0.82015 0.77079 0.75584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.68 13.06 55.49 0.72 -27.95 16 2 C -0.02 -0.45 5.50 -17.43 -0.10 -0.54 16 3 Si 0.91 22.57 29.55 -169.99 -5.02 17.54 16 4 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 5 H -0.29 -7.27 7.11 56.52 0.40 -6.86 16 6 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 7 C -0.24 -6.87 9.99 -15.06 -0.15 -7.02 16 8 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 9 N -0.74 -19.17 5.60 -59.91 -0.34 -19.50 16 10 C 0.15 3.09 6.26 -4.05 -0.03 3.06 16 11 C -0.13 -2.00 5.33 -26.73 -0.14 -2.14 16 12 C -0.11 -1.30 5.21 -26.73 -0.14 -1.44 16 13 C -0.12 -1.06 5.21 -26.73 -0.14 -1.20 16 14 C -0.13 -0.90 5.33 -26.73 -0.14 -1.04 16 15 C 0.12 0.89 5.67 -4.04 -0.02 0.87 16 16 N -0.72 -5.02 5.55 -61.46 -0.34 -5.36 16 17 C 0.59 5.31 7.80 -12.63 -0.10 5.21 16 18 O -0.52 -6.61 16.82 5.25 0.09 -6.52 16 19 C -0.22 -1.54 6.46 -36.54 -0.24 -1.78 16 20 C -0.07 -0.46 9.88 -40.69 -0.40 -0.86 16 21 C -0.06 -0.38 9.88 -40.69 -0.40 -0.78 16 22 C -0.24 -1.43 6.46 -36.55 -0.24 -1.66 16 23 C 0.60 4.02 8.07 -12.64 -0.10 3.92 16 24 N -0.85 -2.49 8.87 30.37 0.27 -2.22 16 25 O -0.52 -5.55 17.65 5.26 0.09 -5.46 16 26 S 0.18 0.76 21.40 -107.50 -2.30 -1.54 16 27 H 0.25 7.53 8.31 -40.82 -0.34 7.19 16 28 H 0.38 10.45 7.67 -40.82 -0.31 10.14 16 29 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 30 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 31 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 33 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 34 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 35 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 38 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 39 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 40 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 41 H 0.40 1.78 7.58 -40.82 -0.31 1.47 16 42 H 0.16 0.98 8.04 -52.49 -0.42 0.55 16 43 H 0.16 0.86 8.04 -52.48 -0.42 0.44 16 44 H 0.40 0.28 7.93 -40.82 -0.32 -0.05 16 45 H 0.41 0.67 8.93 -40.82 -0.36 0.31 16 LS Contribution 398.92 15.07 6.01 6.01 Total: -1.00 -36.66 398.92 -9.92 -46.58 By element: Atomic # 1 Polarization: 10.60 SS G_CDS: -6.77 Total: 3.83 kcal Atomic # 6 Polarization: -3.08 SS G_CDS: -2.34 Total: -5.41 kcal Atomic # 7 Polarization: -55.35 SS G_CDS: 0.32 Total: -55.03 kcal Atomic # 8 Polarization: -12.16 SS G_CDS: 0.18 Total: -11.98 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -5.02 Total: 17.54 kcal Atomic # 16 Polarization: 0.76 SS G_CDS: -2.30 Total: -1.54 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -36.66 -9.92 -46.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001179816302.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.192 kcal (2) G-P(sol) polarization free energy of solvation -36.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds