Wall clock time and date at job start Sat Apr 11 2020 05:38:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86802 * 119.99342 * 2 1 4 4 H 1.48494 * 109.47266 * 269.99819 * 3 2 1 5 5 H 1.48500 * 109.47184 * 30.00205 * 3 2 1 6 6 H 1.48504 * 109.46523 * 150.00198 * 3 2 1 7 7 C 1.38810 * 120.00438 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00056 * 179.97438 * 7 2 1 9 9 N 1.36941 * 119.99881 * 359.97438 * 7 2 1 10 10 C 1.46499 * 119.99984 * 179.97438 * 9 7 2 11 11 C 1.52993 * 109.47100 * 179.97438 * 10 9 7 12 12 C 1.53001 * 109.47149 * 179.97438 * 11 10 9 13 13 C 1.53003 * 109.47085 * 180.02562 * 12 11 10 14 14 C 1.52999 * 109.46719 * 180.02562 * 13 12 11 15 15 C 1.53005 * 109.47091 * 180.02562 * 14 13 12 16 16 N 1.46499 * 109.47411 * 180.02562 * 15 14 13 17 17 C 1.34777 * 120.00128 * 180.02562 * 16 15 14 18 18 O 1.21630 * 119.99858 * 359.97438 * 17 16 15 19 19 C 1.47168 * 120.00044 * 179.97438 * 17 16 15 20 20 C 1.36613 * 125.15813 * 179.97438 * 19 17 16 21 21 C 1.36805 * 114.74000 * 179.97438 * 20 19 17 22 22 C 1.36607 * 114.74886 * 359.97438 * 21 20 19 23 23 C 1.47164 * 125.16468 * 180.02562 * 22 21 20 24 24 N 1.34780 * 120.00027 * 180.02562 * 23 22 21 25 25 O 1.21622 * 120.00221 * 359.97438 * 23 22 21 26 26 S 1.75833 * 125.16103 * 359.94861 * 19 17 16 27 27 H 0.97000 * 120.00440 * 359.97438 * 1 2 3 28 28 H 0.96998 * 119.99763 * 0.02562 * 9 7 2 29 29 H 1.09000 * 109.46670 * 60.00305 * 10 9 7 30 30 H 1.09004 * 109.47231 * 300.00493 * 10 9 7 31 31 H 1.09004 * 109.47478 * 60.00558 * 11 10 9 32 32 H 1.09004 * 109.47585 * 300.00404 * 11 10 9 33 33 H 1.09004 * 109.47117 * 60.00339 * 12 11 10 34 34 H 1.09000 * 109.47376 * 300.00158 * 12 11 10 35 35 H 1.09000 * 109.47041 * 60.00658 * 13 12 11 36 36 H 1.08996 * 109.47310 * 299.99822 * 13 12 11 37 37 H 1.08996 * 109.47780 * 59.99963 * 14 13 12 38 38 H 1.09000 * 109.47232 * 299.99842 * 14 13 12 39 39 H 1.09004 * 109.47006 * 59.99471 * 15 14 13 40 40 H 1.09000 * 109.46631 * 299.99814 * 15 14 13 41 41 H 0.96992 * 119.99793 * 359.97438 * 16 15 14 42 42 H 1.07998 * 122.63470 * 0.22052 * 20 19 17 43 43 H 1.08003 * 122.62287 * 180.02562 * 21 20 19 44 44 H 0.96996 * 120.00509 * 0.02562 * 24 23 22 45 45 H 0.97008 * 119.99856 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 2.4975 2.0466 -1.4000 5 1 1.4474 2.6527 0.7001 6 1 3.5477 1.4403 0.7000 7 6 2.0104 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3257 -2.3881 -0.0005 10 6 2.0583 -3.6567 -0.0017 11 6 1.0642 -4.8197 -0.0008 12 6 1.8292 -6.1446 -0.0026 13 6 0.8350 -7.3076 -0.0024 14 6 1.6002 -8.6326 -0.0035 15 6 0.6060 -9.7956 -0.0039 16 7 1.3386 -11.0643 -0.0045 17 6 0.6648 -12.2316 -0.0054 18 8 -0.5515 -12.2316 -0.0053 19 6 1.4007 -13.5060 -0.0065 20 6 0.8269 -14.7458 -0.0070 21 6 1.7140 -15.7873 -0.0085 22 6 3.0292 -15.4182 -0.0099 23 6 4.1703 -16.3476 -0.0123 24 7 5.4299 -15.8681 -0.0129 25 8 3.9767 -17.5483 -0.0127 26 16 3.1519 -13.6641 -0.0080 27 1 -0.4851 0.8400 0.0004 28 1 0.3557 -2.3881 -0.0005 29 1 2.6856 -3.7148 0.8878 30 1 2.6844 -3.7140 -0.8921 31 1 0.4365 -4.7619 -0.8901 32 1 0.4384 -4.7622 0.8899 33 1 2.4572 -6.2028 0.8865 34 1 2.4546 -6.2019 -0.8935 35 1 0.2075 -7.2493 -0.8917 36 1 0.2094 -7.2506 0.8883 37 1 2.2275 -8.6907 0.8859 38 1 2.2261 -8.6899 -0.8940 39 1 -0.0211 -9.7373 -0.8936 40 1 -0.0202 -9.7385 0.8864 41 1 2.3085 -11.0642 -0.0049 42 1 -0.2431 -14.8923 -0.0101 43 1 1.3990 -16.8203 -0.0095 44 1 5.5845 -14.9105 -0.0115 45 1 6.1821 -16.4808 -0.0141 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001179816302.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:21 Heat of formation + Delta-G solvation = -83.611802 kcal Electronic energy + Delta-G solvation = -24315.966037 eV Core-core repulsion = 20458.183443 eV Total energy + Delta-G solvation = -3857.782594 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.00916 -40.64874 -38.30197 -37.82298 -36.76722 -35.37666 -34.91279 -33.57484 -31.89192 -30.90015 -28.49620 -26.88376 -25.59861 -23.82242 -22.93126 -22.51335 -22.17698 -21.80759 -20.38429 -19.84260 -19.10224 -18.17037 -17.84576 -17.11312 -17.02327 -16.68127 -16.53415 -16.42732 -16.05413 -15.82654 -15.41623 -15.37429 -15.21527 -14.96955 -14.27692 -14.19781 -13.90612 -13.68635 -13.48947 -13.38464 -13.03517 -12.94176 -12.65201 -12.41020 -12.34873 -12.15962 -12.00969 -11.80880 -11.78547 -11.62419 -11.48445 -11.32370 -11.22228 -10.92756 -10.91312 -10.38599 -9.99598 -9.73549 -9.00760 -7.95941 -5.25470 -1.11545 0.11157 0.45124 0.89409 1.47265 1.49640 1.58198 1.85332 1.91061 2.05804 2.30271 2.56178 3.37679 3.55975 3.71213 3.79042 4.00142 4.02914 4.03066 4.20805 4.25799 4.29744 4.34488 4.60516 4.64493 4.77766 4.80176 4.83462 4.91134 4.98055 4.98437 5.08292 5.10169 5.15819 5.24996 5.30024 5.39446 5.48616 5.55588 5.58652 5.70131 6.16292 6.26821 6.28198 6.94461 7.06140 7.32272 8.09826 8.32241 9.27883 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.028278 B = 0.001250 C = 0.001199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.934259 B =22396.870282 C =23345.149148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.077 4.077 3 Si 0.977 3.023 4 H -0.285 1.285 5 H -0.294 1.294 6 H -0.268 1.268 7 C -0.251 4.251 8 H 0.076 0.924 9 N -0.752 5.752 10 C 0.147 3.853 11 C -0.118 4.118 12 C -0.104 4.104 13 C -0.114 4.114 14 C -0.120 4.120 15 C 0.119 3.881 16 N -0.711 5.711 17 C 0.583 3.417 18 O -0.564 6.564 19 C -0.248 4.248 20 C -0.072 4.072 21 C -0.071 4.071 22 C -0.251 4.251 23 C 0.593 3.407 24 N -0.827 5.827 25 O -0.570 6.570 26 S 0.270 5.730 27 H 0.252 0.748 28 H 0.372 0.628 29 H 0.019 0.981 30 H 0.019 0.981 31 H 0.053 0.947 32 H 0.054 0.946 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.063 0.937 36 H 0.063 0.937 37 H 0.084 0.916 38 H 0.084 0.916 39 H 0.064 0.936 40 H 0.064 0.936 41 H 0.412 0.588 42 H 0.160 0.840 43 H 0.163 0.837 44 H 0.414 0.586 45 H 0.421 0.579 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.603 -35.758 0.005 37.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.269 4.269 3 Si 0.805 3.195 4 H -0.212 1.212 5 H -0.221 1.221 6 H -0.193 1.193 7 C -0.382 4.382 8 H 0.094 0.906 9 N -0.394 5.394 10 C 0.021 3.979 11 C -0.155 4.155 12 C -0.142 4.142 13 C -0.152 4.152 14 C -0.157 4.157 15 C -0.004 4.004 16 N -0.362 5.362 17 C 0.369 3.631 18 O -0.444 6.444 19 C -0.370 4.370 20 C -0.106 4.106 21 C -0.104 4.104 22 C -0.373 4.373 23 C 0.377 3.623 24 N -0.392 5.392 25 O -0.450 6.450 26 S 0.539 5.461 27 H 0.060 0.940 28 H 0.204 0.796 29 H 0.037 0.963 30 H 0.037 0.963 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.103 0.897 38 H 0.103 0.897 39 H 0.083 0.917 40 H 0.082 0.918 41 H 0.249 0.751 42 H 0.178 0.822 43 H 0.181 0.819 44 H 0.245 0.755 45 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges 11.904 -35.266 0.014 37.221 hybrid contribution -0.829 0.312 -0.017 0.885 sum 11.075 -34.954 -0.003 36.667 Atomic orbital electron populations 1.69827 1.06737 1.26166 1.59482 1.25628 0.96446 1.01304 1.03551 0.85095 0.77710 0.79155 0.77534 1.21246 1.22063 1.19268 1.19699 0.91603 0.85531 1.41413 0.90573 1.42676 1.05693 1.01577 1.89471 1.20887 0.94450 0.85055 0.97470 1.21646 0.98091 0.94449 1.01360 1.21420 0.97938 0.91996 1.02809 1.21447 0.98092 0.93073 1.02561 1.21723 0.97770 0.91942 1.04289 1.21484 0.95209 0.81434 1.02320 1.45813 1.10876 1.05267 1.74278 1.17317 0.86474 0.83105 0.76173 1.90838 1.14575 1.87541 1.51455 1.24882 0.98906 0.97377 1.15860 1.20667 1.02628 0.89430 0.97850 1.20657 0.90178 1.01839 0.97769 1.24935 0.98047 0.98361 1.15974 1.17166 0.83265 0.86483 0.75350 1.43550 1.06600 1.13036 1.76008 1.90874 1.85740 1.16579 1.51845 1.83426 0.99145 0.97259 1.66250 0.93955 0.79603 0.96269 0.96262 0.92784 0.92769 0.91159 0.91166 0.91841 0.91846 0.89730 0.89741 0.91743 0.91753 0.75127 0.82234 0.81918 0.75509 0.74579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.32 13.06 21.65 0.28 -60.04 16 2 C -0.08 -4.50 5.50 84.86 0.47 -4.03 16 3 Si 0.98 46.24 29.55 68.60 2.03 48.26 16 4 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 5 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 6 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 7 C -0.25 -14.30 9.99 84.03 0.84 -13.46 16 8 H 0.08 4.14 7.83 -2.91 -0.02 4.12 16 9 N -0.75 -39.32 5.60 -343.46 -1.92 -41.24 16 10 C 0.15 5.87 6.26 86.38 0.54 6.41 16 11 C -0.12 -3.59 5.33 30.59 0.16 -3.43 16 12 C -0.10 -2.13 5.21 30.60 0.16 -1.97 16 13 C -0.11 -1.85 5.21 30.60 0.16 -1.69 16 14 C -0.12 -1.29 5.33 30.60 0.16 -1.13 16 15 C 0.12 1.64 5.67 86.38 0.49 2.13 16 16 N -0.71 -8.60 5.55 -466.61 -2.59 -11.19 16 17 C 0.58 10.22 7.80 86.59 0.68 10.90 16 18 O -0.56 -14.74 16.82 -4.13 -0.07 -14.81 16 19 C -0.25 -3.21 6.46 24.24 0.16 -3.05 16 20 C -0.07 -0.95 9.88 21.55 0.21 -0.73 16 21 C -0.07 -0.86 9.88 21.55 0.21 -0.64 16 22 C -0.25 -2.67 6.46 24.23 0.16 -2.51 16 23 C 0.59 7.32 8.07 86.59 0.70 8.01 16 24 N -0.83 -3.06 8.87 -176.07 -1.56 -4.62 16 25 O -0.57 -12.03 17.65 -4.10 -0.07 -12.11 16 26 S 0.27 1.52 21.40 -56.49 -1.21 0.31 16 27 H 0.25 15.08 8.31 -92.71 -0.77 14.31 16 28 H 0.37 20.69 7.67 -92.71 -0.71 19.98 16 29 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.05 1.71 8.14 -2.38 -0.02 1.69 16 32 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 33 H 0.07 1.34 8.14 -2.38 -0.02 1.32 16 34 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 35 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 36 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 38 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 39 H 0.06 1.04 8.14 -2.38 -0.02 1.02 16 40 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 41 H 0.41 2.45 7.58 -92.71 -0.70 1.75 16 42 H 0.16 2.07 8.04 -2.91 -0.02 2.05 16 43 H 0.16 1.83 8.04 -2.91 -0.02 1.80 16 44 H 0.41 -0.70 7.93 -92.71 -0.74 -1.43 16 45 H 0.42 0.52 8.93 -92.70 -0.83 -0.31 16 Total: -1.00 -80.27 398.92 -1.95 -82.22 By element: Atomic # 1 Polarization: 20.33 SS G_CDS: -1.93 Total: 18.41 kcal Atomic # 6 Polarization: -10.29 SS G_CDS: 5.10 Total: -5.20 kcal Atomic # 7 Polarization: -111.30 SS G_CDS: -5.79 Total: -117.09 kcal Atomic # 8 Polarization: -26.77 SS G_CDS: -0.14 Total: -26.92 kcal Atomic # 14 Polarization: 46.24 SS G_CDS: 2.03 Total: 48.26 kcal Atomic # 16 Polarization: 1.52 SS G_CDS: -1.21 Total: 0.31 kcal Total: -80.27 -1.95 -82.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001179816302.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.388 kcal (2) G-P(sol) polarization free energy of solvation -80.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds