Wall clock time and date at job start Sat Apr 11 2020 05:38:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86795 * 120.00525 * 2 1 4 4 H 1.48498 * 109.47328 * 270.00642 * 3 2 1 5 5 H 1.48507 * 109.46658 * 30.00430 * 3 2 1 6 6 H 1.48504 * 109.47191 * 149.99743 * 3 2 1 7 7 C 1.38950 * 119.99839 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99908 * 359.97438 * 7 2 1 9 9 N 1.37097 * 120.00222 * 180.02562 * 7 2 1 10 10 C 1.34780 * 120.00007 * 179.97438 * 9 7 2 11 11 O 1.21289 * 120.00289 * 0.02562 * 10 9 7 12 12 C 1.50701 * 119.99669 * 179.97438 * 10 9 7 13 13 N 1.46906 * 109.46965 * 180.02562 * 12 10 9 14 14 C 1.48530 * 110.99918 * 52.60015 * 13 12 10 15 15 C 1.54940 * 103.22772 * 159.72252 * 14 13 12 16 16 H 1.09000 * 110.72311 * 80.94364 * 15 14 13 17 17 O 1.42898 * 110.87937 * 204.16017 * 15 14 13 18 18 C 1.54604 * 102.91923 * 322.58912 * 15 14 13 19 19 H 1.09001 * 110.30354 * 263.04015 * 18 15 14 20 20 N 1.46498 * 110.30690 * 140.87034 * 18 15 14 21 21 C 1.34778 * 119.99762 * 157.82978 * 20 18 15 22 22 O 1.21284 * 119.99813 * 0.02562 * 21 20 18 23 23 C 1.50698 * 120.00186 * 180.02562 * 21 20 18 24 24 N 1.46501 * 109.47329 * 180.02562 * 23 21 20 25 25 C 1.34596 * 126.44143 * 124.99867 * 24 23 21 26 26 N 1.31064 * 106.67941 * 180.02562 * 25 24 23 27 27 N 1.28835 * 107.99381 * 359.97438 * 26 25 24 28 28 N 1.28741 * 109.39858 * 359.73612 * 27 26 25 29 29 C 1.47899 * 110.99831 * 170.00161 * 13 12 10 30 30 H 0.96999 * 119.99726 * 359.97438 * 1 2 3 31 31 H 0.97001 * 119.99887 * 359.97438 * 9 7 2 32 32 H 1.08993 * 109.47133 * 60.00295 * 12 10 9 33 33 H 1.08996 * 109.47320 * 300.00036 * 12 10 9 34 34 H 1.09002 * 110.67228 * 278.15582 * 14 13 12 35 35 H 1.09004 * 110.67104 * 41.28985 * 14 13 12 36 36 H 0.96701 * 113.99703 * 293.58520 * 17 15 14 37 37 H 0.97001 * 120.00334 * 337.83176 * 20 18 15 38 38 H 1.09005 * 109.46756 * 299.99551 * 23 21 20 39 39 H 1.08995 * 109.47017 * 59.99706 * 23 21 20 40 40 H 1.08002 * 126.65634 * 0.03501 * 25 24 23 41 41 H 1.08997 * 109.91760 * 333.50746 * 29 13 12 42 42 H 1.08995 * 109.91931 * 94.80655 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6176 0.0000 4 1 2.4957 2.0464 -1.4000 5 1 1.4457 2.6526 0.7002 6 1 3.5458 1.4400 0.7001 7 6 2.0088 -1.2034 -0.0005 8 1 1.4688 -2.1387 -0.0005 9 7 3.3798 -1.2035 0.0000 10 6 4.0536 -2.3707 0.0000 11 8 3.4472 -3.4211 -0.0009 12 6 5.5606 -2.3707 0.0000 13 7 6.0503 -3.7558 -0.0006 14 6 5.4336 -4.5378 -1.1026 15 6 6.4085 -5.7288 -1.2807 16 1 6.2162 -6.4997 -0.5345 17 8 6.3154 -6.2703 -2.5999 18 6 7.7929 -5.0795 -1.0523 19 1 8.2540 -4.8263 -2.0070 20 7 8.6592 -5.9835 -0.2917 21 6 9.9984 -5.8457 -0.3554 22 8 10.4862 -4.9730 -1.0421 23 6 10.8896 -6.7759 0.4265 24 7 12.2916 -6.4216 0.1912 25 6 13.2113 -6.1315 1.1301 26 7 14.3282 -5.8724 0.4952 27 7 14.1063 -5.9973 -0.7678 28 7 12.8781 -6.3349 -0.9548 29 6 7.5090 -3.8022 -0.2404 30 1 -0.4850 0.8401 0.0004 31 1 3.8649 -0.3634 0.0004 32 1 5.9240 -1.8570 0.8899 33 1 5.9240 -1.8569 -0.8899 34 1 4.4430 -4.8912 -0.8161 35 1 5.3822 -3.9431 -2.0146 36 1 5.4658 -6.6894 -2.7939 37 1 8.2690 -6.6812 0.2577 38 1 10.6659 -6.6853 1.4895 39 1 10.7149 -7.8025 0.1046 40 1 13.0586 -6.1156 2.1991 41 1 7.8201 -2.9248 -0.8074 42 1 8.0405 -3.8408 0.7104 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001190904629.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:36 Heat of formation + Delta-G solvation = 39.400416 kcal Electronic energy + Delta-G solvation = -28864.338581 eV Core-core repulsion = 24497.889733 eV Total energy + Delta-G solvation = -4366.448848 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.149 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -44.52235 -40.70314 -39.41009 -38.10566 -36.01712 -35.83458 -34.88485 -34.01167 -32.80087 -31.82967 -30.97500 -29.47502 -28.08931 -26.67259 -24.34283 -24.19508 -23.74354 -21.90798 -21.40116 -20.76729 -19.55745 -18.59538 -18.36268 -18.24945 -17.67471 -16.95749 -16.56461 -16.33069 -16.02948 -15.89835 -15.29119 -15.04893 -14.96639 -14.49556 -14.18727 -13.94966 -13.56241 -13.35541 -13.23106 -13.08943 -12.76698 -12.63251 -12.50047 -12.47573 -12.09940 -11.97338 -11.60334 -11.57830 -11.48654 -11.21153 -10.84817 -10.80515 -10.66362 -10.48943 -10.16176 -10.07554 -9.68504 -9.64611 -8.68794 -8.33472 -8.21870 -6.41407 -3.93402 0.84440 1.36423 1.88608 1.94560 2.45146 2.95649 3.00229 3.09100 3.57261 3.60189 3.60917 3.79501 3.87843 4.01065 4.06296 4.11184 4.29257 4.37506 4.58593 4.75207 4.84175 5.02020 5.10036 5.12573 5.18392 5.28929 5.42001 5.51345 5.53538 5.61214 5.62157 5.77174 5.88452 5.98144 6.28483 6.75981 6.85766 6.90310 7.40739 7.46341 7.52850 8.02533 8.26729 8.47503 8.83363 9.30617 9.68692 10.71194 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.021405 B = 0.002072 C = 0.001951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.805622 B =13509.016787 C =14345.670337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.043 3.957 3 Si 0.879 3.121 4 H -0.270 1.270 5 H -0.275 1.275 6 H -0.269 1.269 7 C -0.307 4.307 8 H 0.121 0.879 9 N -0.585 5.585 10 C 0.449 3.551 11 O -0.566 6.566 12 C 0.032 3.968 13 N -0.490 5.490 14 C 0.008 3.992 15 C 0.092 3.908 16 H 0.077 0.923 17 O -0.562 6.562 18 C 0.144 3.856 19 H 0.108 0.892 20 N -0.708 5.708 21 C 0.502 3.498 22 O -0.507 6.507 23 C 0.096 3.904 24 N -0.302 5.302 25 C 0.161 3.839 26 N -0.307 5.307 27 N -0.078 5.078 28 N -0.062 5.062 29 C 0.026 3.974 30 H 0.275 0.725 31 H 0.371 0.629 32 H 0.094 0.906 33 H 0.054 0.946 34 H 0.128 0.872 35 H 0.052 0.948 36 H 0.387 0.613 37 H 0.405 0.595 38 H 0.146 0.854 39 H 0.137 0.863 40 H 0.236 0.764 41 H 0.057 0.943 42 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.112 -14.178 4.303 24.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.161 4.161 3 Si 0.705 3.295 4 H -0.196 1.196 5 H -0.200 1.200 6 H -0.194 1.194 7 C -0.436 4.436 8 H 0.138 0.862 9 N -0.223 5.223 10 C 0.235 3.765 11 O -0.449 6.449 12 C -0.099 4.099 13 N -0.215 5.215 14 C -0.120 4.120 15 C 0.032 3.968 16 H 0.095 0.905 17 O -0.367 6.367 18 C 0.039 3.961 19 H 0.125 0.875 20 N -0.361 5.361 21 C 0.284 3.716 22 O -0.380 6.380 23 C -0.030 4.030 24 N -0.104 5.104 25 C -0.138 4.138 26 N -0.154 5.154 27 N -0.072 5.072 28 N -0.049 5.049 29 C -0.103 4.103 30 H 0.085 0.915 31 H 0.204 0.796 32 H 0.112 0.888 33 H 0.072 0.928 34 H 0.146 0.854 35 H 0.070 0.930 36 H 0.235 0.765 37 H 0.241 0.759 38 H 0.164 0.836 39 H 0.155 0.845 40 H 0.252 0.748 41 H 0.075 0.925 42 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 20.144 -13.936 3.101 24.691 hybrid contribution -0.799 1.270 0.514 1.587 sum 19.345 -12.666 3.615 23.403 Atomic orbital electron populations 1.69616 1.05656 1.27673 1.48730 1.25054 0.95518 0.98073 0.97415 0.86679 0.79818 0.83976 0.78983 1.19560 1.20041 1.19446 1.19415 0.79080 0.96658 1.48431 0.86186 1.42198 1.07637 1.06138 1.66354 1.19527 0.87947 0.84610 0.84377 1.90454 1.69439 1.30528 1.54520 1.22176 0.95604 0.90090 1.02079 1.64598 1.02293 1.11282 1.43324 1.24177 1.00727 0.93951 0.93144 1.22985 0.93460 0.95494 0.84848 0.90477 1.86463 1.41022 1.78162 1.31101 1.21784 0.89700 0.88970 0.95646 0.87455 1.45849 1.04970 1.35943 1.49370 1.20140 0.83199 0.85406 0.82826 1.90881 1.74224 1.33615 1.39272 1.21995 0.75120 1.01634 1.04215 1.48155 1.11551 1.45534 1.05151 1.27767 0.84880 1.01186 0.99970 1.75002 1.22157 1.18403 0.99800 1.78699 1.05776 1.14050 1.08672 1.79046 1.03201 1.15718 1.06922 1.23353 0.90560 0.96439 0.99952 0.91480 0.79591 0.88781 0.92846 0.85443 0.93005 0.76479 0.75917 0.83637 0.84501 0.74774 0.92512 0.89677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.82 13.96 55.50 0.77 -24.04 16 2 C 0.04 1.14 5.50 -17.47 -0.10 1.04 16 3 Si 0.88 18.77 27.74 -169.99 -4.71 14.05 16 4 H -0.27 -5.69 7.11 56.52 0.40 -5.28 16 5 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 6 H -0.27 -5.22 6.52 56.52 0.37 -4.86 16 7 C -0.31 -8.30 10.16 -14.93 -0.15 -8.46 16 8 H 0.12 3.70 7.39 -52.48 -0.39 3.31 16 9 N -0.58 -13.22 5.09 -10.96 -0.06 -13.28 16 10 C 0.45 9.45 7.49 -10.98 -0.08 9.37 16 11 O -0.57 -13.62 13.09 5.55 0.07 -13.55 16 12 C 0.03 0.50 5.52 -4.97 -0.03 0.47 16 13 N -0.49 -6.84 5.26 -231.89 -1.22 -8.06 16 14 C 0.01 0.11 5.03 -1.90 -0.01 0.10 16 15 C 0.09 0.94 4.14 -24.86 -0.10 0.84 16 16 H 0.08 0.64 7.74 -51.93 -0.40 0.24 16 17 O -0.56 -5.79 13.41 -35.23 -0.47 -6.26 16 18 C 0.14 1.46 3.06 -66.57 -0.20 1.25 16 19 H 0.11 1.36 7.58 -51.93 -0.39 0.96 16 20 N -0.71 -4.60 5.03 -52.48 -0.26 -4.87 16 21 C 0.50 3.85 7.84 -10.99 -0.09 3.77 16 22 O -0.51 -6.72 15.41 5.55 0.09 -6.63 16 23 C 0.10 0.29 6.96 -5.19 -0.04 0.25 16 24 N -0.30 -2.27 3.19 -63.74 -0.20 -2.47 16 25 C 0.16 1.02 12.79 -90.40 -1.16 -0.14 16 26 N -0.31 -3.41 12.36 29.59 0.37 -3.04 16 27 N -0.08 -1.05 13.43 60.35 0.81 -0.24 16 28 N -0.06 -0.76 12.30 60.35 0.74 -0.02 16 29 C 0.03 0.30 6.49 -2.75 -0.02 0.28 16 30 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 31 H 0.37 7.42 5.76 -40.82 -0.24 7.19 16 32 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 33 H 0.05 0.76 7.81 -51.93 -0.41 0.35 16 34 H 0.13 2.13 5.97 -51.93 -0.31 1.82 16 35 H 0.05 0.79 8.02 -51.93 -0.42 0.37 16 36 H 0.39 2.59 9.12 45.56 0.42 3.01 16 37 H 0.41 1.25 8.35 -40.82 -0.34 0.91 16 38 H 0.15 -0.27 8.08 -51.93 -0.42 -0.69 16 39 H 0.14 0.05 8.14 -51.93 -0.42 -0.38 16 40 H 0.24 0.07 8.06 -52.49 -0.42 -0.35 16 41 H 0.06 0.67 7.57 -51.93 -0.39 0.28 16 42 H 0.08 0.87 7.92 -51.93 -0.41 0.46 16 LS Contribution 359.92 15.07 5.42 5.42 Total: -1.00 -39.92 359.92 -4.76 -44.68 By element: Atomic # 1 Polarization: 13.66 SS G_CDS: -4.14 Total: 9.52 kcal Atomic # 6 Polarization: 10.75 SS G_CDS: -1.97 Total: 8.78 kcal Atomic # 7 Polarization: -56.97 SS G_CDS: 0.95 Total: -56.02 kcal Atomic # 8 Polarization: -26.13 SS G_CDS: -0.31 Total: -26.44 kcal Atomic # 14 Polarization: 18.77 SS G_CDS: -4.71 Total: 14.05 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -39.92 -4.76 -44.68 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001190904629.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.083 kcal (2) G-P(sol) polarization free energy of solvation -39.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.683 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds