Wall clock time and date at job start Sat Apr 11 2020 05:38:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 119.99705 * 2 1 4 4 H 1.48503 * 109.46909 * 270.00202 * 3 2 1 5 5 H 1.48499 * 109.47492 * 30.00082 * 3 2 1 6 6 H 1.48494 * 109.47170 * 150.00684 * 3 2 1 7 7 C 1.37871 * 120.00092 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00377 * 359.97438 * 7 2 1 9 9 S 1.76204 * 119.99751 * 179.97438 * 7 2 1 10 10 O 1.42096 * 106.40455 * 66.45861 * 9 7 2 11 11 O 1.42102 * 106.40198 * 293.53406 * 9 7 2 12 12 N 1.65603 * 107.21588 * 179.97438 * 9 7 2 13 13 C 1.46499 * 119.99701 * 65.00126 * 12 9 7 14 14 C 1.53004 * 109.47090 * 164.99897 * 13 12 9 15 15 C 1.53123 * 109.52385 * 175.00017 * 14 13 12 16 16 C 1.53039 * 109.27602 * 177.62327 * 15 14 13 17 17 N 1.46847 * 109.52490 * 300.81568 * 16 15 14 18 18 C 1.46893 * 111.00094 * 185.83901 * 17 16 15 19 19 C 1.50706 * 109.47176 * 170.00005 * 18 17 16 20 20 C 1.38671 * 120.41557 * 90.00048 * 19 18 17 21 21 C 1.38623 * 118.42080 * 180.02562 * 20 19 18 22 22 C 1.38232 * 119.15969 * 359.97438 * 21 20 19 23 23 N 1.31851 * 120.76522 * 0.02562 * 22 21 20 24 24 C 1.31889 * 121.72445 * 359.70275 * 23 22 21 25 25 C 1.46853 * 111.19484 * 61.74300 * 17 16 15 26 26 C 1.53029 * 109.52383 * 298.26111 * 25 17 16 27 27 H 0.97002 * 120.00047 * 359.97438 * 1 2 3 28 28 H 0.96997 * 119.99968 * 244.99587 * 12 9 7 29 29 H 1.08995 * 109.47609 * 44.99752 * 13 12 9 30 30 H 1.08998 * 109.47394 * 284.99520 * 13 12 9 31 31 H 1.08993 * 109.52476 * 54.87111 * 14 13 12 32 32 H 1.08997 * 109.50415 * 57.68299 * 15 14 13 33 33 H 1.08996 * 109.53487 * 297.57744 * 15 14 13 34 34 H 1.08996 * 109.45887 * 180.80373 * 16 15 14 35 35 H 1.09003 * 109.45680 * 60.83091 * 16 15 14 36 36 H 1.09001 * 109.46739 * 50.00414 * 18 17 16 37 37 H 1.09000 * 109.47767 * 290.00673 * 18 17 16 38 38 H 1.08001 * 120.78989 * 359.97438 * 20 19 18 39 39 H 1.07997 * 120.42153 * 180.02562 * 21 20 19 40 40 H 1.08002 * 119.61826 * 179.97438 * 22 21 20 41 41 H 1.07996 * 119.61768 * 180.31162 * 24 23 22 42 42 H 1.08998 * 109.46032 * 58.27672 * 25 17 16 43 43 H 1.09003 * 109.46203 * 178.23910 * 25 17 16 44 44 H 1.09008 * 109.50463 * 299.23262 * 26 25 17 45 45 H 1.09004 * 109.50129 * 179.12244 * 26 25 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 16 3.7666 -1.1939 -0.0012 10 8 4.1683 -0.6497 1.2484 11 8 4.1673 -0.6493 -1.2511 12 7 4.2568 -2.7757 -0.0011 13 6 3.9610 -3.6343 -1.1506 14 6 4.8199 -4.8984 -1.0774 15 6 4.4238 -5.8524 -2.2077 16 6 5.3258 -7.0880 -2.1654 17 7 6.7277 -6.6776 -2.3160 18 6 7.6104 -7.8472 -2.4188 19 6 8.9937 -7.3992 -2.8153 20 6 9.9301 -7.0715 -1.8465 21 6 11.1898 -6.6640 -2.2576 22 6 11.4686 -6.5989 -3.6099 23 7 10.5531 -6.9182 -4.5035 24 6 9.3464 -7.3150 -4.1487 25 6 7.1446 -5.7986 -1.2159 26 6 6.2969 -4.5246 -1.2299 27 1 -0.4850 0.8401 0.0004 28 1 4.7398 -3.1337 0.7601 29 1 4.1835 -3.0968 -2.0724 30 1 2.9066 -3.9102 -1.1364 31 1 4.6656 -5.3885 -0.1162 32 1 4.5414 -5.3487 -3.1671 33 1 3.3846 -6.1560 -2.0810 34 1 5.0557 -7.7627 -2.9777 35 1 5.1973 -7.5988 -1.2111 36 1 7.2203 -8.5317 -3.1721 37 1 7.6551 -8.3547 -1.4552 38 1 9.6837 -7.1315 -0.7967 39 1 11.9439 -6.4016 -1.5305 40 1 12.4474 -6.2820 -3.9384 41 1 8.6244 -7.5731 -4.9092 42 1 7.0077 -6.3156 -0.2662 43 1 8.1957 -5.5370 -1.3386 44 1 6.4440 -3.9999 -2.1739 45 1 6.5962 -3.8794 -0.4038 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001193003159.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:49 Heat of formation + Delta-G solvation = -49.866623 kcal Electronic energy + Delta-G solvation = -27145.812442 eV Core-core repulsion = 23289.493149 eV Total energy + Delta-G solvation = -3856.319294 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.61769 -39.20097 -36.08067 -35.52410 -34.39406 -33.54059 -33.00874 -32.34336 -31.19403 -30.92567 -27.36607 -26.39043 -24.93625 -24.01533 -23.17142 -22.22343 -21.41220 -19.87886 -18.98102 -17.45341 -17.37251 -16.70831 -16.64146 -16.22151 -15.78133 -15.51993 -14.95047 -14.94115 -14.60780 -14.43505 -13.99082 -13.82549 -13.58396 -13.37204 -13.32734 -13.17716 -12.92577 -12.81696 -12.56924 -12.33884 -12.06997 -11.65667 -11.48032 -11.35377 -11.26072 -10.86905 -10.64263 -10.56144 -10.46622 -10.43852 -10.33751 -10.06406 -9.79162 -9.72795 -9.31504 -9.19533 -9.19310 -8.57135 -8.50343 -6.79019 -5.32338 0.79877 0.97422 2.12162 3.08622 3.19473 3.28578 3.39674 3.84100 3.96911 4.15703 4.35048 4.41191 4.47207 4.60805 4.64500 4.66797 4.71401 4.77963 4.82898 5.01161 5.10663 5.16678 5.27805 5.30487 5.34933 5.39199 5.46819 5.48953 5.59422 5.67462 5.75972 5.79255 5.83609 5.92560 5.97187 6.10690 6.13511 6.23637 6.25032 6.39493 6.45781 6.65827 6.82000 6.86474 7.49173 7.70081 7.76888 8.22118 8.72465 10.33381 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.021585 B = 0.002427 C = 0.002299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1296.892297 B =11536.333363 C =12178.237673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.825 5.825 2 C 0.152 3.848 3 Si 0.803 3.197 4 H -0.246 1.246 5 H -0.256 1.256 6 H -0.220 1.220 7 C -1.015 5.015 8 H 0.120 0.880 9 S 2.677 3.323 10 O -1.011 7.011 11 O -1.012 7.012 12 N -1.124 6.124 13 C 0.131 3.869 14 C -0.095 4.095 15 C -0.112 4.112 16 C 0.059 3.941 17 N -0.533 5.533 18 C 0.097 3.903 19 C -0.127 4.127 20 C -0.071 4.071 21 C -0.173 4.173 22 C 0.095 3.905 23 N -0.486 5.486 24 C 0.119 3.881 25 C 0.053 3.947 26 C -0.113 4.113 27 H 0.280 0.720 28 H 0.403 0.597 29 H 0.077 0.923 30 H 0.063 0.937 31 H 0.072 0.928 32 H 0.077 0.923 33 H 0.073 0.927 34 H 0.076 0.924 35 H 0.034 0.966 36 H 0.087 0.913 37 H 0.044 0.956 38 H 0.131 0.869 39 H 0.134 0.866 40 H 0.154 0.846 41 H 0.155 0.845 42 H 0.032 0.968 43 H 0.074 0.926 44 H 0.075 0.925 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.364 -18.563 -3.971 25.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C -0.067 4.067 3 Si 0.623 3.377 4 H -0.170 1.170 5 H -0.180 1.180 6 H -0.142 1.142 7 C -1.149 5.149 8 H 0.138 0.862 9 S 2.778 3.222 10 O -1.001 7.001 11 O -1.001 7.001 12 N -0.880 5.880 13 C 0.004 3.996 14 C -0.115 4.115 15 C -0.151 4.151 16 C -0.068 4.068 17 N -0.258 5.258 18 C -0.031 4.031 19 C -0.129 4.129 20 C -0.097 4.097 21 C -0.193 4.193 22 C -0.062 4.062 23 N -0.194 5.194 24 C -0.038 4.038 25 C -0.075 4.075 26 C -0.151 4.151 27 H 0.090 0.910 28 H 0.235 0.765 29 H 0.095 0.905 30 H 0.082 0.918 31 H 0.090 0.910 32 H 0.096 0.904 33 H 0.092 0.908 34 H 0.094 0.906 35 H 0.052 0.948 36 H 0.105 0.895 37 H 0.062 0.938 38 H 0.148 0.852 39 H 0.152 0.848 40 H 0.171 0.829 41 H 0.173 0.827 42 H 0.051 0.949 43 H 0.093 0.907 44 H 0.094 0.906 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 16.908 -17.349 -5.470 24.835 hybrid contribution -0.573 -0.189 2.109 2.194 sum 16.334 -17.538 -3.361 24.201 Atomic orbital electron populations 1.69992 1.06611 1.29004 1.39802 1.24437 0.94788 0.98856 0.88613 0.87845 0.83555 0.84495 0.81811 1.17017 1.18009 1.14221 1.30473 1.15788 1.02075 1.66585 0.86167 1.01273 0.77235 0.70457 0.73196 1.93469 1.85502 1.76033 1.45134 1.93405 1.85014 1.76142 1.45568 1.55456 1.74224 1.31554 1.26792 1.21147 0.98600 0.90707 0.89124 1.21424 0.95187 0.95715 0.99130 1.21610 0.98603 0.95208 0.99647 1.22091 0.87257 0.97300 1.00173 1.61947 1.02169 1.16476 1.45163 1.20937 0.89156 0.92259 1.00703 1.20762 0.96230 1.01114 0.94829 1.21529 0.92958 0.95449 0.99814 1.22133 0.97698 1.01768 0.97727 1.22781 0.98556 0.95424 0.89402 1.67724 1.02151 1.10619 1.38943 1.22662 0.92922 0.94031 0.94227 1.22209 0.99872 0.94136 0.91264 1.21654 0.93896 0.96220 1.03302 0.90952 0.76523 0.90494 0.91831 0.90977 0.90419 0.90815 0.90560 0.94820 0.89482 0.93819 0.85160 0.84828 0.82889 0.82736 0.94950 0.90744 0.90593 0.91075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -23.88 13.96 55.43 0.77 -23.10 16 2 C 0.15 4.38 5.47 -17.82 -0.10 4.29 16 3 Si 0.80 20.71 26.54 -169.99 -4.51 16.20 16 4 H -0.25 -6.22 7.11 56.52 0.40 -5.82 16 5 H -0.26 -6.07 7.11 56.52 0.40 -5.67 16 6 H -0.22 -5.78 5.61 56.52 0.32 -5.46 16 7 C -1.01 -28.12 10.26 30.60 0.31 -27.81 16 8 H 0.12 3.35 8.06 -52.49 -0.42 2.92 16 9 S 2.68 65.88 4.24 -107.50 -0.46 65.42 16 10 O -1.01 -26.93 16.02 -57.17 -0.92 -27.85 16 11 O -1.01 -26.79 16.31 -57.17 -0.93 -27.72 16 12 N -1.12 -20.63 5.57 -10.61 -0.06 -20.68 16 13 C 0.13 2.08 5.62 -4.04 -0.02 2.06 16 14 C -0.09 -1.13 2.28 -90.49 -0.21 -1.34 16 15 C -0.11 -1.14 5.38 -26.65 -0.14 -1.28 16 16 C 0.06 0.51 5.46 -3.83 -0.02 0.49 16 17 N -0.53 -4.92 4.65 -236.11 -1.10 -6.01 16 18 C 0.10 0.73 5.14 -4.98 -0.03 0.70 16 19 C -0.13 -1.07 4.89 -104.48 -0.51 -1.58 16 20 C -0.07 -0.55 8.05 -39.28 -0.32 -0.86 16 21 C -0.17 -1.28 10.11 -39.44 -0.40 -1.68 16 22 C 0.10 0.81 11.18 -17.55 -0.20 0.62 16 23 N -0.49 -5.14 10.36 -13.25 -0.14 -5.27 16 24 C 0.12 1.12 10.86 -17.55 -0.19 0.93 16 25 C 0.05 0.52 5.18 -3.83 -0.02 0.50 16 26 C -0.11 -1.34 5.24 -26.65 -0.14 -1.48 16 27 H 0.28 7.36 8.31 -40.82 -0.34 7.02 16 28 H 0.40 6.30 8.41 -34.47 -0.29 6.01 16 29 H 0.08 1.30 7.75 -51.93 -0.40 0.90 16 30 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 33 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.08 0.56 8.01 -51.93 -0.42 0.14 16 35 H 0.03 0.28 8.14 -51.93 -0.42 -0.14 16 36 H 0.09 0.54 7.94 -51.93 -0.41 0.13 16 37 H 0.04 0.30 8.08 -51.93 -0.42 -0.12 16 38 H 0.13 0.81 7.99 -52.49 -0.42 0.39 16 39 H 0.13 0.67 8.06 -52.49 -0.42 0.25 16 40 H 0.15 0.92 8.06 -52.49 -0.42 0.50 16 41 H 0.16 1.22 8.06 -52.49 -0.42 0.79 16 42 H 0.03 0.30 8.14 -51.93 -0.42 -0.12 16 43 H 0.07 0.73 5.77 -51.93 -0.30 0.44 16 44 H 0.08 1.01 8.14 -51.92 -0.42 0.59 16 45 H 0.07 0.86 7.64 -51.93 -0.40 0.47 16 LS Contribution 371.70 15.07 5.60 5.60 Total: -1.00 -34.36 371.70 -10.63 -45.00 By element: Atomic # 1 Polarization: 11.80 SS G_CDS: -6.93 Total: 4.87 kcal Atomic # 6 Polarization: -24.48 SS G_CDS: -1.97 Total: -26.45 kcal Atomic # 7 Polarization: -54.56 SS G_CDS: -0.52 Total: -55.08 kcal Atomic # 8 Polarization: -53.72 SS G_CDS: -1.85 Total: -55.57 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -4.51 Total: 16.20 kcal Atomic # 16 Polarization: 65.88 SS G_CDS: -0.46 Total: 65.42 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -34.36 -10.63 -45.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193003159.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.868 kcal (2) G-P(sol) polarization free energy of solvation -34.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds