Wall clock time and date at job start Sat Apr 11 2020 05:38:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86803 * 119.99543 * 2 1 4 4 H 1.48495 * 109.47473 * 270.00035 * 3 2 1 5 5 H 1.48504 * 109.47322 * 30.00462 * 3 2 1 6 6 H 1.48502 * 109.46874 * 149.99911 * 3 2 1 7 7 C 1.38945 * 120.00489 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00082 * 179.97438 * 7 2 1 9 9 N 1.37098 * 120.00016 * 0.02562 * 7 2 1 10 10 C 1.34776 * 120.00083 * 179.97438 * 9 7 2 11 11 O 1.21284 * 120.00023 * 359.97438 * 10 9 7 12 12 C 1.50700 * 119.99822 * 179.97438 * 10 9 7 13 13 N 1.46900 * 109.46837 * 179.97438 * 12 10 9 14 14 C 1.48562 * 111.00016 * 74.58697 * 13 12 10 15 15 C 1.54370 * 104.59481 * 159.03715 * 14 13 12 16 16 H 1.09006 * 110.41228 * 95.08804 * 15 14 13 17 17 O 1.42903 * 110.32352 * 217.24532 * 15 14 13 18 18 C 1.54259 * 105.06350 * 336.14427 * 15 14 13 19 19 H 1.08997 * 110.32376 * 241.00363 * 18 15 14 20 20 N 1.46501 * 110.32224 * 118.89621 * 18 15 14 21 21 C 1.34781 * 119.99791 * 155.00181 * 20 18 15 22 22 O 1.21278 * 120.00052 * 359.97438 * 21 20 18 23 23 C 1.50694 * 119.99808 * 180.02562 * 21 20 18 24 24 N 1.46503 * 109.47428 * 179.97438 * 23 21 20 25 25 N 1.28882 * 125.45031 * 89.99153 * 24 23 21 26 26 C 1.31041 * 107.91727 * 180.02562 * 25 24 23 27 27 N 1.33310 * 106.89805 * 0.02562 * 26 25 24 28 28 N 1.28777 * 125.44723 * 269.69749 * 24 23 21 29 29 C 1.48567 * 110.99905 * 190.00283 * 13 12 10 30 30 H 0.96994 * 120.00281 * 359.97438 * 1 2 3 31 31 H 0.96996 * 119.99750 * 359.97438 * 9 7 2 32 32 H 1.09003 * 109.47112 * 59.99992 * 12 10 9 33 33 H 1.08998 * 109.47472 * 300.00074 * 12 10 9 34 34 H 1.08998 * 110.41065 * 40.25398 * 14 13 12 35 35 H 1.09003 * 110.40788 * 277.81711 * 14 13 12 36 36 H 0.96700 * 114.00311 * 295.64246 * 17 15 14 37 37 H 0.97005 * 120.00083 * 335.00376 * 20 18 15 38 38 H 1.09004 * 109.47147 * 299.99448 * 23 21 20 39 39 H 1.08998 * 109.47756 * 59.99884 * 23 21 20 40 40 H 1.07996 * 126.54715 * 180.02562 * 26 25 24 41 41 H 1.08999 * 110.41176 * 82.18022 * 29 13 12 42 42 H 1.09001 * 110.50623 * 319.78919 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.4955 2.0466 -1.4000 5 1 1.4454 2.6527 0.7001 6 1 3.5456 1.4403 0.7001 7 6 2.0089 -1.2032 0.0005 8 1 3.0889 -1.2032 0.0001 9 7 1.3236 -2.3906 0.0005 10 6 1.9975 -3.5577 0.0005 11 8 3.2104 -3.5577 0.0001 12 6 1.2441 -4.8629 0.0011 13 7 2.1988 -5.9793 0.0004 14 6 2.8260 -6.1444 1.3370 15 6 3.3438 -7.5987 1.3467 16 1 4.3934 -7.6305 1.0542 17 8 3.1727 -8.1777 2.6420 18 6 2.4757 -8.3403 0.3094 19 1 1.9205 -9.1471 0.7878 20 7 3.3134 -8.8701 -0.7694 21 6 2.8982 -9.9347 -1.4841 22 8 1.8313 -10.4543 -1.2338 23 6 3.7601 -10.4801 -2.5934 24 7 3.0923 -11.6284 -3.2112 25 7 2.2788 -11.5720 -4.2093 26 6 1.8866 -12.7928 -4.4792 27 7 2.4927 -13.5967 -3.6054 28 7 3.2283 -12.8561 -2.8473 29 6 1.5065 -7.2717 -0.2400 30 1 -0.4850 0.8400 0.0004 31 1 0.3536 -2.3906 0.0005 32 1 0.6171 -4.9208 -0.8886 33 1 0.6177 -4.9205 0.8913 34 1 2.0866 -5.9988 2.1244 35 1 3.6536 -5.4453 1.4574 36 1 3.6949 -7.7516 3.3354 37 1 4.1669 -8.4548 -0.9693 38 1 3.9200 -9.7056 -3.3435 39 1 4.7207 -10.7950 -2.1858 40 1 1.2028 -13.0908 -5.2602 41 1 1.3405 -7.4214 -1.3068 42 1 0.5598 -7.3039 0.2994 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001193016194.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:50 Heat of formation + Delta-G solvation = 2.681829 kcal Electronic energy + Delta-G solvation = -28822.060958 eV Core-core repulsion = 24454.019873 eV Total energy + Delta-G solvation = -4368.041085 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.149 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -45.34529 -41.51133 -40.41375 -39.43816 -36.91884 -36.07331 -35.93050 -35.52365 -34.10753 -33.27877 -31.86058 -30.27101 -29.11535 -27.96212 -26.05911 -24.97397 -24.44673 -22.92130 -22.16768 -21.65725 -21.00877 -19.89651 -19.27425 -19.06141 -18.52214 -17.80751 -17.47911 -17.15253 -16.86056 -16.60077 -16.48695 -16.19927 -15.91006 -15.66534 -15.34148 -15.16105 -14.91284 -14.62552 -14.49265 -13.94497 -13.81443 -13.67825 -13.49493 -13.35133 -13.04712 -12.96302 -12.87787 -12.52041 -12.40863 -12.26826 -12.12293 -12.03276 -11.88475 -11.74019 -11.47325 -11.21718 -10.98498 -10.49041 -10.26440 -10.00554 -9.51666 -8.45968 -5.94625 0.10068 0.81959 1.25018 1.26978 1.38465 1.42472 1.54748 1.88233 2.05468 2.27441 2.64897 3.12263 3.17865 3.19828 3.26342 3.37445 3.47058 3.50269 3.79805 3.93323 3.97462 4.03473 4.18958 4.29191 4.32247 4.35387 4.48765 4.56516 4.62308 4.72766 4.79032 4.80199 4.92298 5.06388 5.22362 5.41477 5.69801 5.72879 6.03364 6.25590 6.60211 6.75849 6.93182 7.13238 7.31260 7.56902 8.11468 8.71439 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.018936 B = 0.002070 C = 0.001951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1478.285194 B =13520.458007 C =14350.400378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.016 4.016 3 Si 0.993 3.007 4 H -0.272 1.272 5 H -0.274 1.274 6 H -0.271 1.271 7 C -0.329 4.329 8 H 0.082 0.918 9 N -0.577 5.577 10 C 0.446 3.554 11 O -0.610 6.610 12 C 0.044 3.956 13 N -0.489 5.489 14 C 0.006 3.994 15 C 0.111 3.889 16 H 0.100 0.900 17 O -0.572 6.572 18 C 0.156 3.844 19 H 0.094 0.906 20 N -0.689 5.689 21 C 0.509 3.491 22 O -0.573 6.573 23 C 0.105 3.895 24 N -0.124 5.124 25 N -0.317 5.317 26 C 0.148 3.852 27 N -0.313 5.313 28 N -0.071 5.071 29 C 0.026 3.974 30 H 0.277 0.723 31 H 0.395 0.605 32 H 0.107 0.893 33 H 0.069 0.931 34 H 0.050 0.950 35 H 0.081 0.919 36 H 0.403 0.597 37 H 0.425 0.575 38 H 0.184 0.816 39 H 0.189 0.811 40 H 0.273 0.727 41 H 0.087 0.913 42 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.926 -19.777 -3.444 21.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.215 4.215 3 Si 0.817 3.183 4 H -0.197 1.197 5 H -0.199 1.199 6 H -0.195 1.195 7 C -0.458 4.458 8 H 0.100 0.900 9 N -0.214 5.214 10 C 0.233 3.767 11 O -0.496 6.496 12 C -0.088 4.088 13 N -0.214 5.214 14 C -0.123 4.123 15 C 0.051 3.949 16 H 0.117 0.883 17 O -0.381 6.381 18 C 0.050 3.950 19 H 0.112 0.888 20 N -0.343 5.343 21 C 0.294 3.706 22 O -0.451 6.451 23 C -0.017 4.017 24 N -0.037 5.037 25 N -0.167 5.167 26 C -0.155 4.155 27 N -0.184 5.184 28 N -0.065 5.065 29 C -0.103 4.103 30 H 0.086 0.914 31 H 0.228 0.772 32 H 0.125 0.875 33 H 0.087 0.913 34 H 0.068 0.932 35 H 0.100 0.900 36 H 0.254 0.746 37 H 0.264 0.736 38 H 0.201 0.799 39 H 0.206 0.794 40 H 0.289 0.711 41 H 0.106 0.894 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 7.269 -20.289 -3.471 21.830 hybrid contribution -0.863 1.624 0.490 1.903 sum 6.406 -18.666 -2.981 19.958 Atomic orbital electron populations 1.69676 1.06896 1.29228 1.50563 1.26054 0.96526 1.02505 0.96463 0.84923 0.77917 0.76888 0.78598 1.19728 1.19862 1.19531 1.19653 0.92725 0.83825 1.49623 0.89996 1.41953 1.09304 1.04796 1.65360 1.20570 0.88278 0.85578 0.82238 1.90463 1.15297 1.87781 1.56046 1.21944 0.93953 0.89343 1.03535 1.65090 1.27074 1.01327 1.27911 1.23877 1.00275 0.97772 0.90355 1.22559 0.99455 0.89107 0.83767 0.88281 1.86461 1.72514 1.60826 1.18255 1.21320 0.91513 0.95594 0.86591 0.88771 1.45585 1.24151 1.30588 1.33927 1.20715 0.86555 0.80232 0.83144 1.90821 1.24810 1.60420 1.69062 1.22479 0.96323 0.86096 0.96813 1.49799 1.27551 1.07537 1.18768 1.74728 1.09243 1.26366 1.06372 1.28155 1.01940 0.83913 1.01475 1.75845 1.09311 1.27351 1.05859 1.78923 1.18246 0.89594 1.19717 1.23558 0.96118 0.88311 1.02267 0.91406 0.77193 0.87512 0.91267 0.93213 0.90023 0.74597 0.73589 0.79909 0.79355 0.71148 0.89417 0.92387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.11 13.05 21.66 0.28 -48.82 16 2 C -0.02 -0.84 5.50 84.93 0.47 -0.37 16 3 Si 0.99 41.86 29.55 68.60 2.03 43.89 16 4 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 5 H -0.27 -11.02 7.11 99.48 0.71 -10.32 16 6 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 7 C -0.33 -18.05 9.68 84.04 0.81 -17.24 16 8 H 0.08 4.76 7.16 -2.91 -0.02 4.74 16 9 N -0.58 -28.60 5.29 -307.00 -1.62 -30.23 16 10 C 0.45 20.06 7.63 87.66 0.67 20.73 16 11 O -0.61 -31.22 14.80 -3.04 -0.04 -31.27 16 12 C 0.04 1.44 5.32 85.56 0.46 1.89 16 13 N -0.49 -13.88 4.98 -886.05 -4.41 -18.29 16 14 C 0.01 0.15 5.66 86.45 0.49 0.64 16 15 C 0.11 2.06 4.18 31.49 0.13 2.19 16 16 H 0.10 1.39 7.67 -2.38 -0.02 1.38 16 17 O -0.57 -10.33 13.26 -148.98 -1.98 -12.30 16 18 C 0.16 3.12 3.22 45.88 0.15 3.27 16 19 H 0.09 2.29 7.40 -2.39 -0.02 2.28 16 20 N -0.69 -9.70 5.06 -438.31 -2.22 -11.92 16 21 C 0.51 8.74 7.90 87.65 0.69 9.43 16 22 O -0.57 -16.18 16.08 -3.02 -0.05 -16.23 16 23 C 0.11 0.99 7.08 85.63 0.61 1.60 16 24 N -0.12 -2.33 3.49 -190.99 -0.67 -2.99 16 25 N -0.32 -6.35 12.13 -61.10 -0.74 -7.09 16 26 C 0.15 2.61 13.26 180.69 2.40 5.00 16 27 N -0.31 -7.22 12.50 -61.11 -0.76 -7.98 16 28 N -0.07 -1.63 13.25 37.02 0.49 -1.14 16 29 C 0.03 0.61 6.17 86.45 0.53 1.15 16 30 H 0.28 13.83 8.31 -92.71 -0.77 13.06 16 31 H 0.39 18.82 7.90 -92.71 -0.73 18.08 16 32 H 0.11 3.16 8.08 -2.39 -0.02 3.14 16 33 H 0.07 2.07 7.77 -2.39 -0.02 2.05 16 34 H 0.05 1.31 7.69 -2.39 -0.02 1.29 16 35 H 0.08 2.50 7.24 -2.39 -0.02 2.48 16 36 H 0.40 4.05 9.12 -74.06 -0.68 3.37 16 37 H 0.43 3.23 8.36 -92.70 -0.77 2.45 16 38 H 0.18 0.49 8.14 -2.38 -0.02 0.47 16 39 H 0.19 0.21 8.14 -2.39 -0.02 0.19 16 40 H 0.27 2.01 8.06 -2.91 -0.02 1.99 16 41 H 0.09 2.07 8.05 -2.39 -0.02 2.06 16 42 H 0.06 1.36 8.00 -2.39 -0.02 1.34 16 Total: -1.00 -83.76 367.44 -3.35 -87.11 By element: Atomic # 1 Polarization: 30.04 SS G_CDS: -1.06 Total: 28.98 kcal Atomic # 6 Polarization: 20.89 SS G_CDS: 7.40 Total: 28.29 kcal Atomic # 7 Polarization: -118.81 SS G_CDS: -9.65 Total: -128.46 kcal Atomic # 8 Polarization: -57.73 SS G_CDS: -2.07 Total: -59.80 kcal Atomic # 14 Polarization: 41.86 SS G_CDS: 2.03 Total: 43.89 kcal Total: -83.76 -3.35 -87.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193016194.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.790 kcal (2) G-P(sol) polarization free energy of solvation -83.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.108 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds