Wall clock time and date at job start Sat Apr 11 2020 05:39:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86797 * 120.00313 * 2 1 4 4 H 1.48501 * 109.47451 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47165 * 299.99877 * 3 2 1 6 6 H 1.48501 * 109.46985 * 60.00087 * 3 2 1 7 7 C 1.38802 * 120.00032 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00341 * 179.97438 * 7 2 1 9 9 S 1.76202 * 119.99850 * 0.02562 * 7 2 1 10 10 C 1.81004 * 100.00170 * 179.97438 * 9 7 2 11 11 C 1.50698 * 109.47124 * 179.97438 * 10 9 7 12 12 O 1.21279 * 119.99808 * 0.02562 * 11 10 9 13 13 N 1.34778 * 120.00023 * 179.97438 * 11 10 9 14 14 C 1.46919 * 120.63255 * 179.97438 * 13 11 10 15 15 C 1.53195 * 108.89273 * 126.34238 * 14 13 11 16 16 C 1.53346 * 109.14901 * 54.57640 * 15 14 13 17 17 C 1.53004 * 109.41904 * 178.67276 * 16 15 14 18 18 N 1.46901 * 109.47273 * 295.13166 * 17 16 15 19 19 C 1.46892 * 110.99941 * 179.97438 * 18 17 16 20 20 C 1.50706 * 109.47168 * 179.97438 * 19 18 17 21 21 C 1.41378 * 126.79944 * 94.70790 * 20 19 18 22 22 C 1.35457 * 103.98459 * 179.89054 * 21 20 19 23 23 O 1.34042 * 106.44156 * 0.37031 * 22 21 20 24 24 N 1.20917 * 111.56917 * 359.74690 * 23 22 21 25 25 C 1.53034 * 109.61010 * 298.71225 * 16 15 14 26 26 C 1.46933 * 120.62741 * 0.02562 * 13 11 10 27 27 H 0.96996 * 119.99581 * 0.02562 * 1 2 3 28 28 H 1.09001 * 109.46598 * 59.99628 * 10 9 7 29 29 H 1.09001 * 109.47042 * 299.99889 * 10 9 7 30 30 H 1.09002 * 109.58751 * 246.20189 * 14 13 11 31 31 H 1.08996 * 109.58750 * 6.48373 * 14 13 11 32 32 H 1.08997 * 109.49914 * 174.65962 * 15 14 13 33 33 H 1.09002 * 109.49585 * 294.75599 * 15 14 13 34 34 H 1.09001 * 109.42242 * 58.75065 * 16 15 14 35 35 H 1.09001 * 109.46592 * 55.13132 * 17 16 15 36 36 H 1.08997 * 109.47133 * 175.12697 * 17 16 15 37 37 H 1.00898 * 110.99851 * 56.04100 * 18 17 16 38 38 H 1.08997 * 109.47620 * 299.99656 * 19 18 17 39 39 H 1.09009 * 109.47147 * 60.00030 * 19 18 17 40 40 H 1.08003 * 128.00644 * 0.02877 * 21 20 19 41 41 H 1.07996 * 126.77489 * 180.10521 * 22 21 20 42 42 H 1.08994 * 109.50232 * 301.42239 * 25 16 15 43 43 H 1.09000 * 109.49784 * 181.32304 * 25 16 15 44 44 H 1.08994 * 109.58580 * 353.38021 * 26 13 11 45 45 H 1.09006 * 109.57831 * 113.65514 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 3.7104 1.3463 0.0006 5 1 1.8917 2.3964 -1.2125 6 1 1.8917 2.3964 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 16 1.1293 -2.7280 0.0005 10 6 2.5158 -3.8915 0.0005 11 6 1.9872 -5.3028 0.0012 12 8 0.7910 -5.5023 0.0011 13 7 2.8440 -6.3432 0.0008 14 6 2.3439 -7.7247 0.0019 15 6 2.9815 -8.4840 -1.1659 16 6 4.5073 -8.3646 -1.0703 17 6 5.1516 -9.1487 -2.2154 18 7 4.8596 -10.5794 -2.0544 19 6 5.4634 -11.3651 -3.1387 20 6 5.1437 -12.8244 -2.9398 21 6 4.0716 -13.5429 -3.5172 22 6 4.2222 -14.7996 -3.0346 23 8 5.2998 -14.7734 -2.2378 24 7 5.7965 -13.6717 -2.1979 25 6 4.9144 -6.8927 -1.1679 26 6 4.2958 -6.1174 0.0003 27 1 -0.4849 0.8400 -0.0004 28 1 3.1244 -3.7314 0.8905 29 1 3.1244 -3.7315 -0.8895 30 1 2.6101 -8.2089 0.9415 31 1 1.2600 -7.7211 -0.1129 32 1 2.6917 -9.5337 -1.1189 33 1 2.6417 -8.0542 -2.1081 34 1 4.8437 -8.7720 -0.1169 35 1 4.7484 -8.8003 -3.1662 36 1 6.2304 -8.9940 -2.1997 37 1 3.8652 -10.7417 -2.0010 38 1 5.0620 -11.0321 -4.0958 39 1 6.5445 -11.2259 -3.1299 40 1 3.3103 -13.1753 -4.1894 41 1 3.5951 -15.6529 -3.2464 42 1 4.5566 -6.4779 -2.1102 43 1 6.0005 -6.8119 -1.1234 44 1 4.5001 -5.0533 -0.1181 45 1 4.7204 -6.4686 0.9408 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001204559713.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:17 Heat of formation + Delta-G solvation = 23.186360 kcal Electronic energy + Delta-G solvation = -25940.071596 eV Core-core repulsion = 22086.920117 eV Total energy + Delta-G solvation = -3853.151479 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -45.35220 -40.01485 -38.10298 -36.51902 -34.47727 -32.70659 -32.43258 -31.98525 -31.54199 -29.20179 -27.84062 -25.57859 -25.40329 -23.54143 -23.33880 -22.67542 -21.50710 -20.62981 -19.03279 -18.24427 -17.94962 -17.68671 -16.76383 -16.50032 -15.62454 -15.36896 -15.26997 -15.12632 -14.81013 -14.64026 -14.44693 -14.01193 -13.82034 -13.72615 -13.41188 -13.19953 -13.01376 -12.69776 -12.52867 -12.32645 -12.15801 -11.85930 -11.65459 -11.39735 -11.12541 -11.07467 -11.01858 -10.80889 -10.76131 -10.62257 -10.52719 -10.08454 -9.79392 -9.33436 -9.07894 -8.93566 -8.49992 -8.22029 -6.50360 -6.22189 -3.92622 1.08371 1.74091 2.83921 2.95333 3.06818 3.21004 3.26107 3.30795 3.59100 3.61637 3.82262 4.16005 4.19727 4.45276 4.52543 4.58979 4.67861 4.79097 4.83787 4.89348 5.00252 5.13001 5.13998 5.15496 5.18233 5.20787 5.30073 5.31396 5.38123 5.53499 5.56585 5.61369 5.70064 5.73798 5.77132 5.85857 5.90001 5.97142 6.11704 6.16651 6.47499 6.67813 6.85471 7.58108 7.60038 7.85941 8.34946 8.58034 9.23249 10.85311 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.032354 B = 0.001690 C = 0.001648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.220779 B =16563.165035 C =16983.504001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.534 4.534 8 H 0.073 0.927 9 S -0.062 6.062 10 C -0.150 4.150 11 C 0.535 3.465 12 O -0.519 6.519 13 N -0.620 5.620 14 C 0.114 3.886 15 C -0.130 4.130 16 C -0.085 4.085 17 C 0.065 3.935 18 N -0.684 5.684 19 C 0.137 3.863 20 C 0.016 3.984 21 C -0.233 4.233 22 C -0.059 4.059 23 O 0.101 5.899 24 N -0.346 5.346 25 C -0.129 4.129 26 C 0.109 3.891 27 H 0.268 0.732 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.063 0.937 31 H 0.092 0.908 32 H 0.072 0.928 33 H 0.066 0.934 34 H 0.083 0.917 35 H 0.034 0.966 36 H 0.076 0.924 37 H 0.344 0.656 38 H 0.055 0.945 39 H 0.090 0.910 40 H 0.171 0.829 41 H 0.217 0.783 42 H 0.069 0.931 43 H 0.076 0.924 44 H 0.090 0.910 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.103 -27.435 -7.403 30.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.683 4.683 8 H 0.091 0.909 9 S 0.164 5.836 10 C -0.301 4.301 11 C 0.323 3.677 12 O -0.393 6.393 13 N -0.356 5.356 14 C -0.009 4.009 15 C -0.168 4.168 16 C -0.104 4.104 17 C -0.064 4.064 18 N -0.317 5.317 19 C 0.007 3.993 20 C -0.144 4.144 21 C -0.255 4.255 22 C -0.141 4.141 23 O 0.033 5.967 24 N -0.048 5.048 25 C -0.168 4.168 26 C -0.014 4.014 27 H 0.078 0.922 28 H 0.107 0.893 29 H 0.107 0.893 30 H 0.081 0.919 31 H 0.110 0.890 32 H 0.090 0.910 33 H 0.084 0.916 34 H 0.101 0.899 35 H 0.053 0.947 36 H 0.094 0.906 37 H 0.163 0.837 38 H 0.073 0.927 39 H 0.108 0.892 40 H 0.188 0.812 41 H 0.233 0.767 42 H 0.088 0.912 43 H 0.095 0.905 44 H 0.108 0.892 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 11.773 -27.619 -6.187 30.655 hybrid contribution 0.668 1.546 -1.391 2.184 sum 12.441 -26.074 -7.579 29.867 Atomic orbital electron populations 1.70029 1.05952 1.27329 1.46954 1.24994 0.95025 0.99026 0.94552 0.86119 0.79587 0.81897 0.77904 1.19615 1.20576 1.20558 1.22904 0.94920 0.91628 1.58818 0.90895 1.85406 1.05089 0.96378 1.96688 1.23552 1.06411 0.95464 1.04657 1.20329 0.86212 0.86227 0.74956 1.90684 1.15228 1.85258 1.48148 1.48102 1.06342 1.05765 1.75404 1.21458 1.00579 0.81268 0.97571 1.22045 0.95063 1.00176 0.99536 1.21210 0.95043 0.94754 0.99374 1.22035 1.00950 0.86142 0.97242 1.60458 1.18482 1.07285 1.45462 1.20155 1.01285 0.84619 0.93240 1.23508 0.94873 0.98305 0.97692 1.22799 1.02324 0.93662 1.06695 1.26050 0.92197 1.00657 0.95153 1.84878 1.33996 1.26339 1.51508 1.73885 1.20478 0.91366 1.19120 1.21941 1.00737 0.94627 0.99465 1.21703 0.80071 1.01468 0.98208 0.92245 0.89291 0.89314 0.91869 0.88974 0.91000 0.91570 0.89897 0.94748 0.90578 0.83666 0.92713 0.89171 0.81177 0.76681 0.91239 0.90545 0.89161 0.91445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.16 13.22 55.49 0.73 -25.43 16 2 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 3 Si 0.92 21.37 29.55 -169.99 -5.02 16.35 16 4 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 5 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 6 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 7 C -0.53 -15.22 9.50 30.94 0.29 -14.93 16 8 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 9 S -0.06 -1.70 20.57 -107.50 -2.21 -3.91 16 10 C -0.15 -3.07 4.50 36.00 0.16 -2.90 16 11 C 0.53 10.25 7.72 -10.99 -0.08 10.17 16 12 O -0.52 -11.96 15.27 5.56 0.08 -11.88 16 13 N -0.62 -8.78 2.97 -172.74 -0.51 -9.29 16 14 C 0.11 1.37 6.42 -3.71 -0.02 1.35 16 15 C -0.13 -1.18 5.18 -26.45 -0.14 -1.32 16 16 C -0.08 -0.68 2.36 -90.42 -0.21 -0.90 16 17 C 0.07 0.46 5.14 -3.82 -0.02 0.44 16 18 N -0.68 -5.15 6.49 -115.06 -0.75 -5.90 16 19 C 0.14 0.95 6.27 -4.98 -0.03 0.92 16 20 C 0.02 0.13 6.84 -82.10 -0.56 -0.43 16 21 C -0.23 -1.30 11.12 -39.38 -0.44 -1.74 16 22 C -0.06 -0.28 12.30 29.74 0.37 0.09 16 23 O 0.10 0.81 11.20 17.17 0.19 1.00 16 24 N -0.35 -3.45 12.07 33.42 0.40 -3.04 16 25 C -0.13 -1.10 5.37 -26.59 -0.14 -1.25 16 26 C 0.11 1.18 6.34 -3.68 -0.02 1.15 16 27 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 28 H 0.09 1.69 7.94 -51.92 -0.41 1.27 16 29 H 0.09 1.67 7.69 -51.92 -0.40 1.27 16 30 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.09 1.29 7.00 -51.93 -0.36 0.93 16 32 H 0.07 0.55 6.63 -51.93 -0.34 0.21 16 33 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.03 0.24 8.14 -51.93 -0.42 -0.18 16 36 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.34 2.45 6.95 -39.29 -0.27 2.18 16 38 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 39 H 0.09 0.66 8.14 -51.92 -0.42 0.23 16 40 H 0.17 0.56 8.06 -52.48 -0.42 0.14 16 41 H 0.22 0.06 8.06 -52.49 -0.42 -0.37 16 42 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.09 1.01 5.93 -51.93 -0.31 0.70 16 45 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 383.03 15.07 5.77 5.77 Total: -1.00 -36.00 383.03 -8.98 -44.97 By element: Atomic # 1 Polarization: 5.43 SS G_CDS: -6.72 Total: -1.29 kcal Atomic # 6 Polarization: -6.40 SS G_CDS: -0.95 Total: -7.35 kcal Atomic # 7 Polarization: -43.55 SS G_CDS: -0.12 Total: -43.67 kcal Atomic # 8 Polarization: -11.15 SS G_CDS: 0.28 Total: -10.87 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Atomic # 16 Polarization: -1.70 SS G_CDS: -2.21 Total: -3.91 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -36.00 -8.98 -44.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001204559713.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.160 kcal (2) G-P(sol) polarization free energy of solvation -35.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.973 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds