Wall clock time and date at job start Sat Apr 11 2020 05:39:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86797 * 120.00313 * 2 1 4 4 H 1.48501 * 109.47451 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47165 * 299.99877 * 3 2 1 6 6 H 1.48501 * 109.46985 * 60.00087 * 3 2 1 7 7 C 1.38802 * 120.00032 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00341 * 179.97438 * 7 2 1 9 9 S 1.76202 * 119.99850 * 0.02562 * 7 2 1 10 10 C 1.81004 * 100.00170 * 179.97438 * 9 7 2 11 11 C 1.50698 * 109.47124 * 179.97438 * 10 9 7 12 12 O 1.21279 * 119.99808 * 0.02562 * 11 10 9 13 13 N 1.34778 * 120.00023 * 179.97438 * 11 10 9 14 14 C 1.46919 * 120.63255 * 179.97438 * 13 11 10 15 15 C 1.53195 * 108.89273 * 126.34238 * 14 13 11 16 16 C 1.53346 * 109.14901 * 54.57640 * 15 14 13 17 17 C 1.53004 * 109.41904 * 178.67276 * 16 15 14 18 18 N 1.46901 * 109.47273 * 295.13166 * 17 16 15 19 19 C 1.46892 * 110.99941 * 179.97438 * 18 17 16 20 20 C 1.50706 * 109.47168 * 179.97438 * 19 18 17 21 21 C 1.41378 * 126.79944 * 94.70790 * 20 19 18 22 22 C 1.35457 * 103.98459 * 179.89054 * 21 20 19 23 23 O 1.34042 * 106.44156 * 0.37031 * 22 21 20 24 24 N 1.20917 * 111.56917 * 359.74690 * 23 22 21 25 25 C 1.53034 * 109.61010 * 298.71225 * 16 15 14 26 26 C 1.46933 * 120.62741 * 0.02562 * 13 11 10 27 27 H 0.96996 * 119.99581 * 0.02562 * 1 2 3 28 28 H 1.09001 * 109.46598 * 59.99628 * 10 9 7 29 29 H 1.09001 * 109.47042 * 299.99889 * 10 9 7 30 30 H 1.09002 * 109.58751 * 246.20189 * 14 13 11 31 31 H 1.08996 * 109.58750 * 6.48373 * 14 13 11 32 32 H 1.08997 * 109.49914 * 174.65962 * 15 14 13 33 33 H 1.09002 * 109.49585 * 294.75599 * 15 14 13 34 34 H 1.09001 * 109.42242 * 58.75065 * 16 15 14 35 35 H 1.09001 * 109.46592 * 55.13132 * 17 16 15 36 36 H 1.08997 * 109.47133 * 175.12697 * 17 16 15 37 37 H 1.00898 * 110.99851 * 56.04100 * 18 17 16 38 38 H 1.08997 * 109.47620 * 299.99656 * 19 18 17 39 39 H 1.09009 * 109.47147 * 60.00030 * 19 18 17 40 40 H 1.08003 * 128.00644 * 0.02877 * 21 20 19 41 41 H 1.07996 * 126.77489 * 180.10521 * 22 21 20 42 42 H 1.08994 * 109.50232 * 301.42239 * 25 16 15 43 43 H 1.09000 * 109.49784 * 181.32304 * 25 16 15 44 44 H 1.08994 * 109.58580 * 353.38021 * 26 13 11 45 45 H 1.09006 * 109.57831 * 113.65514 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 3.7104 1.3463 0.0006 5 1 1.8917 2.3964 -1.2125 6 1 1.8917 2.3964 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 16 1.1293 -2.7280 0.0005 10 6 2.5158 -3.8915 0.0005 11 6 1.9872 -5.3028 0.0012 12 8 0.7910 -5.5023 0.0011 13 7 2.8440 -6.3432 0.0008 14 6 2.3439 -7.7247 0.0019 15 6 2.9815 -8.4840 -1.1659 16 6 4.5073 -8.3646 -1.0703 17 6 5.1516 -9.1487 -2.2154 18 7 4.8596 -10.5794 -2.0544 19 6 5.4634 -11.3651 -3.1387 20 6 5.1437 -12.8244 -2.9398 21 6 4.0716 -13.5429 -3.5172 22 6 4.2222 -14.7996 -3.0346 23 8 5.2998 -14.7734 -2.2378 24 7 5.7965 -13.6717 -2.1979 25 6 4.9144 -6.8927 -1.1679 26 6 4.2958 -6.1174 0.0003 27 1 -0.4849 0.8400 -0.0004 28 1 3.1244 -3.7314 0.8905 29 1 3.1244 -3.7315 -0.8895 30 1 2.6101 -8.2089 0.9415 31 1 1.2600 -7.7211 -0.1129 32 1 2.6917 -9.5337 -1.1189 33 1 2.6417 -8.0542 -2.1081 34 1 4.8437 -8.7720 -0.1169 35 1 4.7484 -8.8003 -3.1662 36 1 6.2304 -8.9940 -2.1997 37 1 3.8652 -10.7417 -2.0010 38 1 5.0620 -11.0321 -4.0958 39 1 6.5445 -11.2259 -3.1299 40 1 3.3103 -13.1753 -4.1894 41 1 3.5951 -15.6529 -3.2464 42 1 4.5566 -6.4779 -2.1102 43 1 6.0005 -6.8119 -1.1234 44 1 4.5001 -5.0533 -0.1181 45 1 4.7204 -6.4686 0.9408 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001204559713.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:16 Heat of formation + Delta-G solvation = -1.923283 kcal Electronic energy + Delta-G solvation = -25941.160432 eV Core-core repulsion = 22086.920117 eV Total energy + Delta-G solvation = -3854.240314 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -45.86254 -41.20103 -39.09109 -37.34097 -35.21709 -34.59082 -33.50878 -32.55527 -32.44388 -30.54527 -28.67198 -27.66490 -26.21143 -24.26922 -24.02172 -23.47062 -21.99601 -21.52205 -20.31831 -19.49562 -18.71074 -18.49302 -18.13328 -17.16410 -16.94371 -16.86853 -16.60026 -15.95995 -15.83602 -15.64659 -15.25211 -15.12735 -14.82335 -14.56425 -14.48227 -14.20003 -14.12183 -13.89402 -13.47709 -13.28437 -13.16742 -13.05026 -12.91999 -12.79500 -12.59390 -12.21645 -12.17807 -11.87243 -11.70136 -11.56054 -11.33850 -11.16357 -11.12330 -10.84248 -10.54074 -10.26378 -9.68399 -9.46288 -8.68162 -8.35219 -6.13705 0.65843 1.25437 1.27789 1.41281 1.45901 1.56780 1.57494 2.11753 2.26868 2.49762 2.99052 3.10396 3.24975 3.32581 3.63103 3.71347 3.79937 3.87439 3.89340 4.14885 4.24292 4.24553 4.32061 4.38582 4.40488 4.44114 4.46034 4.55991 4.62298 4.65410 4.73936 4.84643 4.86213 4.88145 4.96535 5.03027 5.08200 5.16173 5.16819 5.41561 5.45734 5.60129 5.93089 6.19541 6.29396 6.33493 7.06075 7.14282 7.39503 8.74349 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.032354 B = 0.001690 C = 0.001648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.220779 B =16563.165035 C =16983.504001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.013 3.987 3 Si 1.000 3.000 4 H -0.256 1.256 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.545 4.545 8 H 0.083 0.917 9 S -0.154 6.154 10 C -0.123 4.123 11 C 0.531 3.469 12 O -0.569 6.569 13 N -0.606 5.606 14 C 0.109 3.891 15 C -0.119 4.119 16 C -0.077 4.077 17 C 0.072 3.928 18 N -0.692 5.692 19 C 0.138 3.862 20 C 0.003 3.997 21 C -0.243 4.243 22 C -0.047 4.047 23 O 0.084 5.916 24 N -0.389 5.389 25 C -0.123 4.123 26 C 0.099 3.901 27 H 0.271 0.729 28 H 0.106 0.894 29 H 0.107 0.893 30 H 0.081 0.919 31 H 0.066 0.934 32 H 0.090 0.910 33 H 0.055 0.945 34 H 0.084 0.916 35 H 0.037 0.963 36 H 0.081 0.919 37 H 0.346 0.654 38 H 0.071 0.929 39 H 0.083 0.917 40 H 0.193 0.807 41 H 0.258 0.742 42 H 0.061 0.939 43 H 0.101 0.899 44 H 0.088 0.912 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.416 -28.289 -8.045 32.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.192 4.192 3 Si 0.821 3.179 4 H -0.179 1.179 5 H -0.199 1.199 6 H -0.200 1.200 7 C -0.693 4.693 8 H 0.101 0.899 9 S 0.074 5.926 10 C -0.274 4.274 11 C 0.319 3.681 12 O -0.448 6.448 13 N -0.340 5.340 14 C -0.013 4.013 15 C -0.158 4.158 16 C -0.096 4.096 17 C -0.057 4.057 18 N -0.326 5.326 19 C 0.009 3.991 20 C -0.156 4.156 21 C -0.264 4.264 22 C -0.127 4.127 23 O 0.019 5.981 24 N -0.094 5.094 25 C -0.161 4.161 26 C -0.023 4.023 27 H 0.080 0.920 28 H 0.124 0.876 29 H 0.125 0.875 30 H 0.099 0.901 31 H 0.085 0.915 32 H 0.108 0.892 33 H 0.074 0.926 34 H 0.102 0.898 35 H 0.055 0.945 36 H 0.100 0.900 37 H 0.165 0.835 38 H 0.089 0.911 39 H 0.101 0.899 40 H 0.210 0.790 41 H 0.274 0.726 42 H 0.080 0.920 43 H 0.120 0.880 44 H 0.106 0.894 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 14.141 -28.530 -6.833 32.567 hybrid contribution -0.024 1.629 -1.196 2.021 sum 14.117 -26.901 -8.029 31.423 Atomic orbital electron populations 1.70193 1.08002 1.28550 1.48049 1.26138 0.95969 1.03331 0.93712 0.84895 0.78645 0.76262 0.78080 1.17938 1.19900 1.19955 1.23229 0.95341 0.91884 1.58816 0.89872 1.85595 1.10699 0.99332 1.97019 1.23367 1.03336 0.94428 1.06272 1.20142 0.86007 0.86735 0.75214 1.90666 1.17318 1.85825 1.51018 1.48130 1.07421 1.05470 1.72990 1.21648 0.99486 0.80307 0.99836 1.21966 0.95803 1.00537 0.97452 1.21134 0.93915 0.94626 0.99920 1.21949 1.01140 0.85800 0.96786 1.60437 1.18643 1.07456 1.46017 1.20164 1.00932 0.84253 0.93768 1.23857 0.95462 0.98691 0.97600 1.23135 1.02325 0.93773 1.07204 1.26878 0.90932 1.01784 0.93131 1.84821 1.35126 1.25842 1.52358 1.73880 1.22204 0.92288 1.21020 1.21909 1.02015 0.94336 0.97848 1.22043 0.77741 1.02065 1.00412 0.91992 0.87553 0.87483 0.90124 0.91496 0.89198 0.92620 0.89784 0.94461 0.90016 0.83494 0.91125 0.89864 0.79013 0.72579 0.92041 0.88041 0.89372 0.89342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.19 13.22 21.65 0.29 -55.90 16 2 C 0.01 0.75 5.49 84.86 0.47 1.22 16 3 Si 1.00 43.56 29.55 68.60 2.03 45.59 16 4 H -0.26 -10.37 7.11 99.48 0.71 -9.66 16 5 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 6 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 7 C -0.54 -31.23 9.50 67.96 0.65 -30.59 16 8 H 0.08 4.42 7.80 -2.91 -0.02 4.39 16 9 S -0.15 -8.65 20.57 -56.49 -1.16 -9.82 16 10 C -0.12 -5.00 4.50 71.24 0.32 -4.68 16 11 C 0.53 20.53 7.72 87.66 0.68 21.21 16 12 O -0.57 -27.30 15.27 -3.03 -0.05 -27.35 16 13 N -0.61 -16.52 2.97 -818.81 -2.43 -18.96 16 14 C 0.11 2.53 6.42 86.36 0.55 3.09 16 15 C -0.12 -1.96 5.18 30.78 0.16 -1.80 16 16 C -0.08 -1.03 2.36 -10.66 -0.03 -1.06 16 17 C 0.07 0.84 5.14 86.30 0.44 1.28 16 18 N -0.69 -9.08 6.49 -517.93 -3.36 -12.44 16 19 C 0.14 1.73 6.27 85.56 0.54 2.26 16 20 C 0.00 0.04 6.84 43.58 0.30 0.34 16 21 C -0.24 -2.23 11.12 22.40 0.25 -1.98 16 22 C -0.05 -0.33 12.30 67.18 0.83 0.49 16 23 O 0.08 1.29 11.20 71.62 0.80 2.09 16 24 N -0.39 -7.59 12.07 -49.57 -0.60 -8.19 16 25 C -0.12 -1.74 5.37 30.69 0.16 -1.58 16 26 C 0.10 1.89 6.34 86.38 0.55 2.44 16 27 H 0.27 15.45 8.31 -92.71 -0.77 14.67 16 28 H 0.11 3.93 7.94 -2.39 -0.02 3.91 16 29 H 0.11 3.93 7.69 -2.39 -0.02 3.91 16 30 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 31 H 0.07 1.92 7.00 -2.39 -0.02 1.90 16 32 H 0.09 1.19 6.63 -2.39 -0.02 1.17 16 33 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.08 1.18 8.14 -2.39 -0.02 1.17 16 35 H 0.04 0.43 8.14 -2.39 -0.02 0.41 16 36 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 37 H 0.35 4.22 6.95 -89.70 -0.62 3.59 16 38 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 39 H 0.08 1.13 8.14 -2.38 -0.02 1.11 16 40 H 0.19 0.75 8.06 -2.91 -0.02 0.72 16 41 H 0.26 -0.76 8.06 -2.91 -0.02 -0.78 16 42 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 43 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 44 H 0.09 1.74 5.93 -2.39 -0.01 1.73 16 45 H 0.09 1.39 8.14 -2.38 -0.02 1.37 16 Total: -1.00 -82.11 383.03 1.76 -80.35 By element: Atomic # 1 Polarization: 13.59 SS G_CDS: 0.38 Total: 13.97 kcal Atomic # 6 Polarization: -15.22 SS G_CDS: 5.86 Total: -9.35 kcal Atomic # 7 Polarization: -89.38 SS G_CDS: -6.11 Total: -95.48 kcal Atomic # 8 Polarization: -26.01 SS G_CDS: 0.76 Total: -25.26 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.59 kcal Atomic # 16 Polarization: -8.65 SS G_CDS: -1.16 Total: -9.82 kcal Total: -82.11 1.76 -80.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001204559713.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.426 kcal (2) G-P(sol) polarization free energy of solvation -82.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds