Wall clock time and date at job start Sat Apr 11 2020 05:37:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.33817 * 124.52225 * 2 1 4 4 C 1.37479 * 115.09903 * 179.70353 * 3 2 1 5 5 C 1.36653 * 113.29286 * 0.49571 * 4 3 2 6 6 C 1.46581 * 125.45418 * 179.79868 * 5 4 3 7 7 O 1.21703 * 120.00112 * 359.72204 * 6 5 4 8 8 N 1.34779 * 119.99984 * 179.71829 * 6 5 4 9 9 C 1.46497 * 120.00034 * 179.97438 * 8 6 5 10 10 C 1.50699 * 109.47024 * 180.02562 * 9 8 6 11 11 O 1.21281 * 120.00114 * 359.97438 * 10 9 8 12 12 N 1.34781 * 119.99854 * 180.02562 * 10 9 8 13 13 C 1.46499 * 119.99668 * 180.02562 * 12 10 9 14 14 H 1.09004 * 109.47279 * 324.99520 * 13 12 10 15 15 C 1.53001 * 109.47235 * 84.99985 * 13 12 10 16 16 C 1.53004 * 109.47047 * 204.99720 * 13 12 10 17 17 H 1.08995 * 109.47216 * 65.00012 * 16 13 12 18 18 C 1.52999 * 109.47083 * 305.00007 * 16 13 12 19 19 N 1.46498 * 109.47065 * 184.99901 * 16 13 12 20 20 C 1.36943 * 119.99752 * 204.72207 * 19 16 13 21 21 H 1.08002 * 119.99793 * 0.27665 * 20 19 16 22 22 C 1.38811 * 120.00012 * 180.27737 * 20 19 16 23 23 N 1.31624 * 119.99698 * 0.02562 * 22 20 19 24 24 Si 1.86795 * 120.00072 * 180.02562 * 22 20 19 25 25 H 1.48495 * 109.47159 * 0.02562 * 24 22 20 26 26 H 1.48505 * 109.47290 * 120.00044 * 24 22 20 27 27 H 1.48503 * 109.47163 * 240.00049 * 24 22 20 28 28 S 1.70614 * 124.51973 * 179.97438 * 2 1 3 29 29 H 1.08999 * 109.47277 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47031 * 300.00010 * 1 2 3 31 31 H 1.09004 * 109.46862 * 59.99754 * 1 2 3 32 32 H 1.07998 * 122.45154 * 359.95812 * 3 2 1 33 33 H 1.07995 * 123.35131 * 180.29469 * 4 3 2 34 34 H 0.97007 * 119.99653 * 0.02562 * 8 6 5 35 35 H 1.09002 * 109.47080 * 60.00099 * 9 8 6 36 36 H 1.08996 * 109.47185 * 300.00167 * 9 8 6 37 37 H 0.96996 * 120.00344 * 359.97438 * 12 10 9 38 38 H 1.08994 * 109.47269 * 59.99476 * 15 13 12 39 39 H 1.09003 * 109.46997 * 180.02562 * 15 13 12 40 40 H 1.09000 * 109.46522 * 299.99301 * 15 13 12 41 41 H 1.08995 * 109.47098 * 300.00077 * 18 16 13 42 42 H 1.09003 * 109.47054 * 59.99725 * 18 16 13 43 43 H 1.08996 * 109.47245 * 179.97438 * 18 16 13 44 44 H 0.97001 * 120.00384 * 25.00562 * 19 16 13 45 45 H 0.96999 * 119.99739 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2654 1.1025 0.0000 4 6 3.6216 0.8774 0.0064 5 6 3.9492 -0.4492 0.0009 6 6 5.3123 -0.9884 0.0014 7 8 6.2658 -0.2322 0.0020 8 7 5.5096 -2.3217 0.0012 9 6 6.8718 -2.8606 0.0012 10 6 6.8162 -4.3666 0.0004 11 8 5.7443 -4.9338 0.0003 12 7 7.9578 -5.0830 0.0007 13 6 7.9038 -6.5470 -0.0007 14 1 7.0486 -6.8796 0.5878 15 6 7.7606 -7.0508 -1.4382 16 6 9.1910 -7.1055 0.6095 17 1 9.2488 -6.8200 1.6599 18 6 10.3984 -6.5389 -0.1401 19 7 9.1896 -8.5663 0.4999 20 6 9.9270 -9.3193 1.3744 21 1 10.5059 -8.8363 2.1476 22 6 9.9303 -10.7032 1.2669 23 7 9.2250 -11.2917 0.3242 24 14 10.9355 -11.7303 2.4601 25 1 11.6326 -10.8352 3.4182 26 1 10.0350 -12.6466 3.2050 27 1 11.9376 -12.5257 1.7062 28 16 2.4739 -1.4057 0.0006 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8430 2.0965 -0.0007 33 1 4.3550 1.6702 0.0119 34 1 4.7495 -2.9244 0.0004 35 1 7.3987 -2.5166 0.8913 36 1 7.3987 -2.5163 -0.8887 37 1 8.8152 -4.6294 0.0011 38 1 8.6156 -6.7182 -2.0267 39 1 7.7199 -8.1400 -1.4392 40 1 6.8435 -6.6530 -1.8728 41 1 10.3406 -6.8243 -1.1904 42 1 10.3993 -5.4519 -0.0585 43 1 11.3154 -6.9363 0.2948 44 1 8.6696 -9.0001 -0.1947 45 1 9.2270 -12.2588 0.2493 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001282228429.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:42 Heat of formation + Delta-G solvation = -32.179455 kcal Electronic energy + Delta-G solvation = -25983.220233 eV Core-core repulsion = 22127.667912 eV Total energy + Delta-G solvation = -3855.552320 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 2.26 seconds Orbital eigenvalues (eV) -40.42109 -39.52462 -38.09049 -37.06708 -34.69326 -34.02190 -32.52526 -31.93592 -29.91113 -28.63401 -28.25548 -26.75727 -24.46293 -23.95311 -23.20133 -21.71938 -20.71414 -19.79003 -19.27244 -18.46430 -17.57586 -16.91422 -16.59212 -16.11740 -15.94136 -15.55604 -15.05611 -14.79257 -14.66280 -14.35417 -14.22933 -14.06634 -13.67847 -13.51135 -13.27620 -13.05134 -12.82797 -12.76814 -12.48186 -12.33183 -12.22948 -11.99695 -11.69924 -11.35564 -11.28130 -10.99469 -10.87179 -10.54240 -10.44675 -10.29525 -10.04514 -9.97586 -9.69245 -9.55206 -9.03140 -8.99770 -8.97192 -8.93387 -7.04863 -5.82500 -3.12222 0.12015 1.06696 1.48409 1.99907 2.50590 2.57485 2.89969 3.31408 3.40399 3.46385 3.48212 4.30856 4.44553 4.55001 4.63777 4.72012 4.91946 5.01202 5.06636 5.10757 5.16798 5.27797 5.41412 5.42707 5.57837 5.58813 5.59608 5.75731 5.75867 5.91263 5.97245 6.00326 6.08391 6.22763 6.33708 6.38188 6.55823 6.66418 6.81466 7.02271 7.11777 7.47585 7.65573 7.81522 8.13171 8.35919 9.47409 10.02093 10.36754 11.40070 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.024534 B = 0.001818 C = 0.001751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1140.980016 B =15394.852153 C =15986.239491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C -0.194 4.194 3 C -0.160 4.160 4 C -0.047 4.047 5 C -0.274 4.274 6 C 0.595 3.405 7 O -0.532 6.532 8 N -0.714 5.714 9 C 0.100 3.900 10 C 0.506 3.494 11 O -0.540 6.540 12 N -0.711 5.711 13 C 0.136 3.864 14 H 0.090 0.910 15 C -0.160 4.160 16 C 0.168 3.832 17 H 0.052 0.948 18 C -0.169 4.169 19 N -0.719 5.719 20 C -0.241 4.241 21 H 0.072 0.928 22 C -0.012 4.012 23 N -0.931 5.931 24 Si 0.908 3.092 25 H -0.280 1.280 26 H -0.291 1.291 27 H -0.291 1.291 28 S 0.214 5.786 29 H 0.070 0.930 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.145 0.855 33 H 0.154 0.846 34 H 0.410 0.590 35 H 0.103 0.897 36 H 0.102 0.898 37 H 0.401 0.599 38 H 0.057 0.943 39 H 0.078 0.922 40 H 0.050 0.950 41 H 0.053 0.947 42 H 0.033 0.967 43 H 0.058 0.942 44 H 0.386 0.614 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.387 25.125 -2.773 29.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.314 4.314 3 C -0.191 4.191 4 C -0.080 4.080 5 C -0.395 4.395 6 C 0.381 3.619 7 O -0.410 6.410 8 N -0.369 5.369 9 C -0.028 4.028 10 C 0.291 3.709 11 O -0.417 6.417 12 N -0.364 5.364 13 C 0.031 3.969 14 H 0.108 0.892 15 C -0.218 4.218 16 C 0.057 3.943 17 H 0.070 0.930 18 C -0.230 4.230 19 N -0.363 5.363 20 C -0.372 4.372 21 H 0.090 0.910 22 C -0.208 4.208 23 N -0.579 5.579 24 Si 0.739 3.261 25 H -0.205 1.205 26 H -0.218 1.218 27 H -0.219 1.219 28 S 0.482 5.518 29 H 0.089 0.911 30 H 0.099 0.901 31 H 0.099 0.901 32 H 0.162 0.838 33 H 0.171 0.829 34 H 0.248 0.752 35 H 0.120 0.880 36 H 0.120 0.880 37 H 0.238 0.762 38 H 0.076 0.924 39 H 0.096 0.904 40 H 0.069 0.931 41 H 0.072 0.928 42 H 0.052 0.948 43 H 0.077 0.923 44 H 0.222 0.778 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -14.669 23.550 -2.625 27.869 hybrid contribution 0.826 0.718 0.358 1.152 sum -13.843 24.268 -2.266 28.030 Atomic orbital electron populations 1.20415 0.87288 1.03370 1.03453 1.24338 1.01729 0.97944 1.07400 1.19941 0.92587 0.99701 1.06870 1.20744 0.96212 0.95040 0.96050 1.24469 0.96723 0.98221 1.20067 1.16874 0.87048 0.81704 0.76242 1.90837 1.41789 1.58027 1.50366 1.45550 1.09060 1.06660 1.75604 1.21127 0.85100 0.91319 1.05211 1.20392 0.84881 0.89056 0.76603 1.90704 1.28952 1.72009 1.50062 1.46166 1.08207 1.08095 1.73901 1.21399 1.00751 0.77064 0.97660 0.89217 1.22144 1.01117 1.02676 0.95844 1.20366 0.90401 0.86541 0.97014 0.92969 1.22549 1.01238 0.97555 1.01629 1.42456 1.57180 0.98440 1.38198 1.19267 1.21015 0.88529 1.08403 0.91034 1.24752 1.00509 0.96590 0.98965 1.69668 1.44584 1.09065 1.34588 0.86109 0.79382 0.80380 0.80236 1.20549 1.21841 1.21854 1.83295 0.94004 1.07051 1.67485 0.91105 0.90118 0.90115 0.83752 0.82888 0.75161 0.87953 0.88015 0.76235 0.92419 0.90367 0.93098 0.92760 0.94811 0.92299 0.77771 0.93461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.38 10.33 36.01 0.37 -0.01 16 2 C -0.19 -1.37 6.28 -35.86 -0.23 -1.60 16 3 C -0.16 -1.16 10.00 -41.41 -0.41 -1.58 16 4 C -0.05 -0.42 10.01 -40.43 -0.40 -0.83 16 5 C -0.27 -2.82 6.45 -36.79 -0.24 -3.06 16 6 C 0.59 7.21 7.78 -12.90 -0.10 7.11 16 7 O -0.53 -7.76 16.84 5.19 0.09 -7.68 16 8 N -0.71 -8.05 5.52 -62.83 -0.35 -8.39 16 9 C 0.10 1.03 6.15 -5.20 -0.03 1.00 16 10 C 0.51 6.51 7.86 -10.98 -0.09 6.43 16 11 O -0.54 -8.74 15.33 5.56 0.09 -8.65 16 12 N -0.71 -8.91 4.99 -53.80 -0.27 -9.18 16 13 C 0.14 2.19 2.62 -67.93 -0.18 2.02 16 14 H 0.09 1.67 7.58 -51.93 -0.39 1.28 16 15 C -0.16 -2.56 9.00 37.16 0.33 -2.23 16 16 C 0.17 3.08 2.93 -67.93 -0.20 2.88 16 17 H 0.05 0.99 8.08 -51.93 -0.42 0.57 16 18 C -0.17 -2.71 9.00 37.16 0.33 -2.37 16 19 N -0.72 -17.11 5.03 -53.43 -0.27 -17.38 16 20 C -0.24 -6.46 9.93 -15.06 -0.15 -6.61 16 21 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 22 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 23 N -0.93 -27.49 13.06 55.49 0.72 -26.77 16 24 Si 0.91 21.99 29.55 -169.99 -5.02 16.97 16 25 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 26 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 27 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 28 S 0.21 1.76 22.08 -107.50 -2.37 -0.62 16 29 H 0.07 0.28 8.11 -51.93 -0.42 -0.14 16 30 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.08 0.28 8.14 -51.93 -0.42 -0.15 16 32 H 0.14 0.73 8.06 -52.49 -0.42 0.30 16 33 H 0.15 1.27 8.06 -52.49 -0.42 0.85 16 34 H 0.41 4.60 6.55 -40.82 -0.27 4.33 16 35 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.10 0.93 8.14 -51.93 -0.42 0.50 16 37 H 0.40 4.02 6.58 -40.82 -0.27 3.76 16 38 H 0.06 0.86 6.56 -51.93 -0.34 0.52 16 39 H 0.08 1.42 6.29 -51.93 -0.33 1.09 16 40 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.05 0.88 6.56 -51.93 -0.34 0.54 16 42 H 0.03 0.41 6.29 -51.93 -0.33 0.08 16 43 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 44 H 0.39 9.74 5.77 -40.82 -0.24 9.50 16 45 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 387.07 15.07 5.83 5.83 Total: -1.00 -33.00 387.07 -8.90 -41.90 By element: Atomic # 1 Polarization: 19.50 SS G_CDS: -6.27 Total: 13.23 kcal Atomic # 6 Polarization: 1.82 SS G_CDS: -1.08 Total: 0.74 kcal Atomic # 7 Polarization: -61.56 SS G_CDS: -0.16 Total: -61.72 kcal Atomic # 8 Polarization: -16.50 SS G_CDS: 0.17 Total: -16.33 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Atomic # 16 Polarization: 1.76 SS G_CDS: -2.37 Total: -0.62 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -33.00 -8.90 -41.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282228429.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.722 kcal (2) G-P(sol) polarization free energy of solvation -32.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.26 seconds