Wall clock time and date at job start Sat Apr 11 2020 05:37:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.33817 * 124.52225 * 2 1 4 4 C 1.37479 * 115.09903 * 179.70353 * 3 2 1 5 5 C 1.36653 * 113.29286 * 0.49571 * 4 3 2 6 6 C 1.46581 * 125.45418 * 179.79868 * 5 4 3 7 7 O 1.21703 * 120.00112 * 359.72204 * 6 5 4 8 8 N 1.34779 * 119.99984 * 179.71829 * 6 5 4 9 9 C 1.46497 * 120.00034 * 179.97438 * 8 6 5 10 10 C 1.50699 * 109.47024 * 180.02562 * 9 8 6 11 11 O 1.21281 * 120.00114 * 359.97438 * 10 9 8 12 12 N 1.34781 * 119.99854 * 180.02562 * 10 9 8 13 13 C 1.46499 * 119.99668 * 180.02562 * 12 10 9 14 14 H 1.09004 * 109.47279 * 324.99520 * 13 12 10 15 15 C 1.53001 * 109.47235 * 84.99985 * 13 12 10 16 16 C 1.53004 * 109.47047 * 204.99720 * 13 12 10 17 17 H 1.08995 * 109.47216 * 65.00012 * 16 13 12 18 18 C 1.52999 * 109.47083 * 305.00007 * 16 13 12 19 19 N 1.46498 * 109.47065 * 184.99901 * 16 13 12 20 20 C 1.36943 * 119.99752 * 204.72207 * 19 16 13 21 21 H 1.08002 * 119.99793 * 0.27665 * 20 19 16 22 22 C 1.38811 * 120.00012 * 180.27737 * 20 19 16 23 23 N 1.31624 * 119.99698 * 0.02562 * 22 20 19 24 24 Si 1.86795 * 120.00072 * 180.02562 * 22 20 19 25 25 H 1.48495 * 109.47159 * 0.02562 * 24 22 20 26 26 H 1.48505 * 109.47290 * 120.00044 * 24 22 20 27 27 H 1.48503 * 109.47163 * 240.00049 * 24 22 20 28 28 S 1.70614 * 124.51973 * 179.97438 * 2 1 3 29 29 H 1.08999 * 109.47277 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47031 * 300.00010 * 1 2 3 31 31 H 1.09004 * 109.46862 * 59.99754 * 1 2 3 32 32 H 1.07998 * 122.45154 * 359.95812 * 3 2 1 33 33 H 1.07995 * 123.35131 * 180.29469 * 4 3 2 34 34 H 0.97007 * 119.99653 * 0.02562 * 8 6 5 35 35 H 1.09002 * 109.47080 * 60.00099 * 9 8 6 36 36 H 1.08996 * 109.47185 * 300.00167 * 9 8 6 37 37 H 0.96996 * 120.00344 * 359.97438 * 12 10 9 38 38 H 1.08994 * 109.47269 * 59.99476 * 15 13 12 39 39 H 1.09003 * 109.46997 * 180.02562 * 15 13 12 40 40 H 1.09000 * 109.46522 * 299.99301 * 15 13 12 41 41 H 1.08995 * 109.47098 * 300.00077 * 18 16 13 42 42 H 1.09003 * 109.47054 * 59.99725 * 18 16 13 43 43 H 1.08996 * 109.47245 * 179.97438 * 18 16 13 44 44 H 0.97001 * 120.00384 * 25.00562 * 19 16 13 45 45 H 0.96999 * 119.99739 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2654 1.1025 0.0000 4 6 3.6216 0.8774 0.0064 5 6 3.9492 -0.4492 0.0009 6 6 5.3123 -0.9884 0.0014 7 8 6.2658 -0.2322 0.0020 8 7 5.5096 -2.3217 0.0012 9 6 6.8718 -2.8606 0.0012 10 6 6.8162 -4.3666 0.0004 11 8 5.7443 -4.9338 0.0003 12 7 7.9578 -5.0830 0.0007 13 6 7.9038 -6.5470 -0.0007 14 1 7.0486 -6.8796 0.5878 15 6 7.7606 -7.0508 -1.4382 16 6 9.1910 -7.1055 0.6095 17 1 9.2488 -6.8200 1.6599 18 6 10.3984 -6.5389 -0.1401 19 7 9.1896 -8.5663 0.4999 20 6 9.9270 -9.3193 1.3744 21 1 10.5059 -8.8363 2.1476 22 6 9.9303 -10.7032 1.2669 23 7 9.2250 -11.2917 0.3242 24 14 10.9355 -11.7303 2.4601 25 1 11.6326 -10.8352 3.4182 26 1 10.0350 -12.6466 3.2050 27 1 11.9376 -12.5257 1.7062 28 16 2.4739 -1.4057 0.0006 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8430 2.0965 -0.0007 33 1 4.3550 1.6702 0.0119 34 1 4.7495 -2.9244 0.0004 35 1 7.3987 -2.5166 0.8913 36 1 7.3987 -2.5163 -0.8887 37 1 8.8152 -4.6294 0.0011 38 1 8.6156 -6.7182 -2.0267 39 1 7.7199 -8.1400 -1.4392 40 1 6.8435 -6.6530 -1.8728 41 1 10.3406 -6.8243 -1.1904 42 1 10.3993 -5.4519 -0.0585 43 1 11.3154 -6.9363 0.2948 44 1 8.6696 -9.0001 -0.1947 45 1 9.2270 -12.2588 0.2493 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001282228429.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:40 Heat of formation + Delta-G solvation = -55.561102 kcal Electronic energy + Delta-G solvation = -25984.234137 eV Core-core repulsion = 22127.667912 eV Total energy + Delta-G solvation = -3856.566225 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.44444 -40.53438 -38.79315 -38.42755 -35.77567 -35.51252 -33.65188 -33.04685 -31.34814 -29.83853 -29.52609 -27.49894 -26.15833 -24.94572 -24.39790 -22.57837 -21.79391 -20.76035 -20.51691 -19.47164 -19.18321 -17.92951 -17.57926 -17.07805 -16.79571 -16.64210 -16.49888 -16.00475 -15.87334 -15.61757 -15.32197 -14.90375 -14.84031 -14.60800 -14.31569 -14.05720 -13.99120 -13.75848 -13.41153 -13.32287 -13.08880 -12.99069 -12.92695 -12.82993 -12.73354 -12.64876 -12.07808 -12.02523 -11.87478 -11.67270 -11.59949 -11.37011 -11.10214 -10.96270 -10.46187 -10.15476 -9.65473 -9.58511 -9.02603 -7.93812 -5.22225 -0.54805 0.43432 0.87138 1.33771 1.45323 1.48298 1.48977 1.58391 1.63471 2.08643 2.30374 2.58410 3.40397 3.50777 3.74217 3.86610 3.90264 3.98931 4.08044 4.25850 4.28099 4.31731 4.33770 4.37955 4.61527 4.67880 4.70522 4.74146 4.87761 4.97205 4.98376 5.04847 5.08636 5.08741 5.17040 5.21920 5.26791 5.40977 5.46416 5.54788 5.64969 6.22901 6.28807 6.43180 6.91986 7.09961 7.35487 8.10036 8.32508 9.29856 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.024534 B = 0.001818 C = 0.001751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1140.980016 B =15394.852153 C =15986.239491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C -0.184 4.184 3 C -0.168 4.168 4 C -0.044 4.044 5 C -0.309 4.309 6 C 0.595 3.405 7 O -0.564 6.564 8 N -0.715 5.715 9 C 0.105 3.895 10 C 0.510 3.490 11 O -0.574 6.574 12 N -0.698 5.698 13 C 0.151 3.849 14 H 0.062 0.938 15 C -0.151 4.151 16 C 0.164 3.836 17 H 0.049 0.951 18 C -0.160 4.160 19 N -0.734 5.734 20 C -0.236 4.236 21 H 0.078 0.922 22 C -0.076 4.076 23 N -0.969 5.969 24 Si 0.970 3.030 25 H -0.265 1.265 26 H -0.297 1.297 27 H -0.295 1.295 28 S 0.211 5.789 29 H 0.074 0.926 30 H 0.095 0.905 31 H 0.095 0.905 32 H 0.170 0.830 33 H 0.155 0.845 34 H 0.410 0.590 35 H 0.119 0.881 36 H 0.121 0.879 37 H 0.417 0.583 38 H 0.073 0.927 39 H 0.051 0.949 40 H 0.053 0.947 41 H 0.051 0.949 42 H 0.079 0.921 43 H 0.041 0.959 44 H 0.376 0.624 45 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.663 27.489 -2.516 31.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.304 4.304 3 C -0.197 4.197 4 C -0.078 4.078 5 C -0.429 4.429 6 C 0.383 3.617 7 O -0.445 6.445 8 N -0.369 5.369 9 C -0.022 4.022 10 C 0.297 3.703 11 O -0.453 6.453 12 N -0.352 5.352 13 C 0.045 3.955 14 H 0.080 0.920 15 C -0.209 4.209 16 C 0.055 3.945 17 H 0.067 0.933 18 C -0.220 4.220 19 N -0.376 5.376 20 C -0.367 4.367 21 H 0.096 0.904 22 C -0.269 4.269 23 N -0.620 5.620 24 Si 0.800 3.200 25 H -0.190 1.190 26 H -0.225 1.225 27 H -0.222 1.222 28 S 0.479 5.521 29 H 0.093 0.907 30 H 0.113 0.887 31 H 0.114 0.886 32 H 0.187 0.813 33 H 0.172 0.828 34 H 0.248 0.752 35 H 0.137 0.863 36 H 0.139 0.861 37 H 0.257 0.743 38 H 0.092 0.908 39 H 0.070 0.930 40 H 0.072 0.928 41 H 0.070 0.930 42 H 0.097 0.903 43 H 0.061 0.939 44 H 0.211 0.789 45 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -14.916 25.974 -2.353 30.044 hybrid contribution 0.803 0.108 0.284 0.859 sum -14.112 26.082 -2.068 29.727 Atomic orbital electron populations 1.20566 0.85201 1.04160 1.04815 1.24756 1.03049 0.97141 1.05445 1.20166 0.91773 1.00973 1.06828 1.20973 0.97259 0.94666 0.94941 1.24420 0.96595 0.99100 1.22740 1.17099 0.87539 0.81537 0.75485 1.90806 1.42894 1.58601 1.52193 1.45596 1.09403 1.06567 1.75294 1.21190 0.85159 0.88916 1.06899 1.20774 0.84118 0.90029 0.75412 1.90701 1.30271 1.72888 1.51487 1.45883 1.09170 1.06398 1.73756 1.20919 0.98417 0.79128 0.97038 0.92015 1.22039 1.01967 1.00946 0.95958 1.20552 0.92524 0.83925 0.97496 0.93328 1.22379 0.98632 1.00274 1.00672 1.42656 1.56750 1.00719 1.37498 1.19646 1.19984 0.88976 1.08140 0.90418 1.25523 1.02391 0.97954 1.00985 1.69819 1.46746 1.08768 1.36657 0.85112 0.77755 0.78731 0.78390 1.18962 1.22462 1.22211 1.83289 0.93483 1.07688 1.67636 0.90670 0.88670 0.88622 0.81301 0.82764 0.75183 0.86313 0.86114 0.74349 0.90845 0.92965 0.92768 0.92955 0.90285 0.93947 0.78938 0.94120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.55 10.33 71.24 0.74 0.19 16 2 C -0.18 -2.24 6.28 24.68 0.15 -2.08 16 3 C -0.17 -2.10 10.00 21.08 0.21 -1.89 16 4 C -0.04 -0.75 10.01 21.72 0.22 -0.54 16 5 C -0.31 -6.21 6.45 24.08 0.16 -6.05 16 6 C 0.60 14.20 7.78 86.42 0.67 14.88 16 7 O -0.56 -16.23 16.84 -4.36 -0.07 -16.30 16 8 N -0.71 -15.60 5.52 -470.92 -2.60 -18.20 16 9 C 0.10 1.99 6.15 85.63 0.53 2.52 16 10 C 0.51 12.45 7.86 87.66 0.69 13.14 16 11 O -0.57 -18.41 15.33 -3.03 -0.05 -18.45 16 12 N -0.70 -16.17 4.99 -442.52 -2.21 -18.37 16 13 C 0.15 4.79 2.62 44.99 0.12 4.91 16 14 H 0.06 2.34 7.58 -2.39 -0.02 2.32 16 15 C -0.15 -4.79 9.00 71.98 0.65 -4.15 16 16 C 0.16 5.90 2.93 44.99 0.13 6.03 16 17 H 0.05 1.79 8.08 -2.39 -0.02 1.77 16 18 C -0.16 -4.76 9.00 71.98 0.65 -4.11 16 19 N -0.73 -35.23 5.03 -322.94 -1.63 -36.86 16 20 C -0.24 -12.65 9.93 84.03 0.83 -11.81 16 21 H 0.08 3.99 7.83 -2.91 -0.02 3.97 16 22 C -0.08 -4.31 5.50 84.86 0.47 -3.84 16 23 N -0.97 -58.59 13.06 21.65 0.28 -58.31 16 24 Si 0.97 45.62 29.55 68.60 2.03 47.65 16 25 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 26 H -0.30 -14.12 7.11 99.48 0.71 -13.41 16 27 H -0.29 -13.89 7.11 99.48 0.71 -13.19 16 28 S 0.21 3.31 22.08 -56.49 -1.25 2.06 16 29 H 0.07 0.42 8.11 -2.39 -0.02 0.40 16 30 H 0.09 0.37 8.14 -2.39 -0.02 0.35 16 31 H 0.10 0.36 8.14 -2.38 -0.02 0.34 16 32 H 0.17 1.22 8.06 -2.91 -0.02 1.19 16 33 H 0.15 2.49 8.06 -2.91 -0.02 2.46 16 34 H 0.41 9.10 6.55 -92.70 -0.61 8.49 16 35 H 0.12 1.93 8.14 -2.39 -0.02 1.91 16 36 H 0.12 1.90 8.14 -2.39 -0.02 1.88 16 37 H 0.42 7.00 6.58 -92.71 -0.61 6.39 16 38 H 0.07 2.08 6.56 -2.39 -0.02 2.06 16 39 H 0.05 1.95 6.29 -2.39 -0.02 1.93 16 40 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 41 H 0.05 1.59 6.56 -2.39 -0.02 1.57 16 42 H 0.08 1.62 6.29 -2.39 -0.02 1.60 16 43 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 44 H 0.38 19.49 5.77 -92.71 -0.54 18.96 16 45 H 0.25 14.71 8.31 -92.71 -0.77 13.94 16 Total: -1.00 -72.56 387.07 0.01 -72.55 By element: Atomic # 1 Polarization: 37.75 SS G_CDS: -0.71 Total: 37.04 kcal Atomic # 6 Polarization: 0.99 SS G_CDS: 6.21 Total: 7.20 kcal Atomic # 7 Polarization: -125.59 SS G_CDS: -6.15 Total: -131.74 kcal Atomic # 8 Polarization: -34.63 SS G_CDS: -0.12 Total: -34.75 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 2.03 Total: 47.65 kcal Atomic # 16 Polarization: 3.31 SS G_CDS: -1.25 Total: 2.06 kcal Total: -72.56 0.01 -72.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282228429.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.988 kcal (2) G-P(sol) polarization free energy of solvation -72.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds