Wall clock time and date at job start Sat Apr 11 2020 05:38:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34488 * 125.56798 * 2 1 4 4 C 1.46691 * 106.32830 * 179.97438 * 3 2 1 5 5 C 1.47267 * 126.93826 * 179.97438 * 4 3 2 6 6 O 1.21630 * 119.99849 * 180.02562 * 5 4 3 7 7 N 1.34777 * 120.00147 * 0.04644 * 5 4 3 8 8 C 1.46503 * 119.99780 * 179.97438 * 7 5 4 9 9 C 1.53005 * 109.46905 * 180.02562 * 8 7 5 10 10 C 1.52997 * 109.47042 * 179.97438 * 9 8 7 11 11 N 1.46495 * 109.47274 * 179.97438 * 10 9 8 12 12 C 1.34780 * 120.00300 * 180.02562 * 11 10 9 13 13 O 1.21278 * 119.99903 * 0.02562 * 12 11 10 14 14 C 1.50699 * 119.99847 * 180.02562 * 12 11 10 15 15 S 1.81005 * 109.46741 * 180.02562 * 14 12 11 16 16 C 1.76201 * 99.99712 * 180.02562 * 15 14 12 17 17 H 1.08001 * 120.00182 * 359.97438 * 16 15 14 18 18 C 1.38800 * 119.99748 * 180.02562 * 16 15 14 19 19 N 1.31631 * 119.99889 * 179.97438 * 18 16 15 20 20 Si 1.86799 * 120.00198 * 359.97438 * 18 16 15 21 21 H 1.48503 * 109.47099 * 89.99772 * 20 18 16 22 22 H 1.48497 * 109.47115 * 210.00002 * 20 18 16 23 23 H 1.48497 * 109.47200 * 330.00411 * 20 18 16 24 24 C 1.36763 * 106.11757 * 359.97438 * 4 3 2 25 25 C 1.50703 * 125.80106 * 180.02562 * 24 4 3 26 26 N 1.34658 * 108.39785 * 0.26724 * 24 4 3 27 27 H 0.96996 * 124.85358 * 179.74542 * 26 24 4 28 28 H 1.08997 * 109.47023 * 90.02271 * 1 2 3 29 29 H 1.08999 * 109.47152 * 210.02553 * 1 2 3 30 30 H 1.09004 * 109.47256 * 330.02758 * 1 2 3 31 31 H 1.08000 * 126.83799 * 359.95419 * 3 2 1 32 32 H 0.96994 * 119.99987 * 359.97438 * 7 5 4 33 33 H 1.09007 * 109.47064 * 299.99341 * 8 7 5 34 34 H 1.08993 * 109.47180 * 59.99678 * 8 7 5 35 35 H 1.08998 * 109.46731 * 299.99714 * 9 8 7 36 36 H 1.09004 * 109.47045 * 59.99763 * 9 8 7 37 37 H 1.08999 * 109.47299 * 300.00202 * 10 9 8 38 38 H 1.09004 * 109.47069 * 60.00176 * 10 9 8 39 39 H 0.97006 * 119.99982 * 0.02562 * 11 10 9 40 40 H 1.08999 * 109.47590 * 300.00190 * 14 12 11 41 41 H 1.08999 * 109.47094 * 60.00678 * 14 12 11 42 42 H 0.97001 * 120.00096 * 179.97438 * 19 18 16 43 43 H 1.09002 * 109.47152 * 89.99942 * 25 24 4 44 44 H 1.09001 * 109.46980 * 330.00042 * 25 24 4 45 45 H 1.09004 * 109.47113 * 210.00023 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2893 1.0940 0.0000 4 6 3.6742 0.6106 0.0006 5 6 4.8977 1.4303 0.0003 6 8 5.9892 0.8937 0.0005 7 7 4.8079 2.7751 0.0003 8 6 6.0250 3.5904 0.0006 9 6 5.6459 5.0728 0.0012 10 6 6.9169 5.9243 0.0021 11 7 6.5539 7.3436 0.0021 12 6 7.5177 8.2857 0.0023 13 8 8.6855 7.9586 0.0021 14 6 7.1442 9.7457 0.0029 15 16 8.6480 10.7531 0.0023 16 6 7.9363 12.3650 0.0038 17 1 6.8626 12.4813 0.0043 18 6 8.7557 13.4854 0.0033 19 7 8.2241 14.6895 0.0039 20 14 10.6128 13.2843 0.0017 21 1 11.1038 13.2312 -1.3988 22 1 11.2360 14.4364 0.7014 23 1 10.9750 12.0254 0.7012 24 6 3.5998 -0.7550 0.0015 25 6 4.7722 -1.7019 0.0030 26 7 2.3008 -1.1098 -0.0045 27 1 1.9758 -2.0237 -0.0087 28 1 -0.3633 -0.0004 -1.0276 29 1 -0.3633 -0.8897 0.5142 30 1 -0.3634 0.8903 0.5134 31 1 1.9628 2.1234 -0.0007 32 1 3.9374 3.2030 0.0002 33 1 6.6127 3.3658 0.8908 34 1 6.6131 3.3658 -0.8892 35 1 5.0580 5.2977 -0.8887 36 1 5.0580 5.2970 0.8913 37 1 7.5045 5.6992 0.8922 38 1 7.5051 5.7001 -0.8878 39 1 5.6198 7.6053 0.0019 40 1 6.5562 9.9707 -0.8869 41 1 6.5565 9.9701 0.8930 42 1 8.7967 15.4725 0.0040 43 1 5.0542 -1.9294 1.0310 44 1 5.6144 -1.2381 -0.5106 45 1 4.4961 -2.6229 -0.5104 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001293156107.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:13 Heat of formation + Delta-G solvation = -80.553670 kcal Electronic energy + Delta-G solvation = -24805.250358 eV Core-core repulsion = 20947.600374 eV Total energy + Delta-G solvation = -3857.649984 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.27484 -40.66698 -40.11417 -37.17807 -35.49440 -34.66065 -33.51416 -32.95786 -31.84983 -30.48895 -29.95151 -27.86515 -26.80302 -25.39978 -23.22023 -22.68838 -21.75727 -21.25636 -20.51057 -19.82538 -18.02600 -17.80238 -17.43670 -17.11642 -17.06962 -16.80294 -16.44998 -16.43037 -15.94454 -15.61808 -15.16469 -14.94934 -14.80985 -14.63246 -14.32860 -14.15344 -14.08300 -13.96374 -13.47679 -13.39778 -13.34121 -13.16641 -13.03871 -13.00055 -12.91297 -12.60155 -12.58349 -12.38783 -12.05474 -11.85787 -11.16118 -11.04410 -10.87959 -10.51736 -10.16146 -10.11470 -9.72715 -8.98445 -8.94858 -8.50648 -6.21240 0.74064 1.00407 1.32253 1.45131 1.47976 1.56653 1.58400 2.03023 2.24601 2.27902 2.55906 2.57001 2.74655 2.87820 3.79177 3.85623 3.95434 3.99611 4.00522 4.08376 4.23641 4.26207 4.28247 4.49684 4.51505 4.54628 4.59827 4.66496 4.70366 4.80408 4.83931 4.88816 5.08413 5.11920 5.12160 5.17808 5.33132 5.41539 5.52346 5.71783 5.83570 6.00675 6.12460 6.49604 6.58586 6.70750 6.94921 7.22260 7.36861 8.61629 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.030944 B = 0.001407 C = 0.001349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.649624 B =19894.386033 C =20757.378725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.015 3.985 3 C -0.181 4.181 4 C -0.267 4.267 5 C 0.583 3.417 6 O -0.592 6.592 7 N -0.714 5.714 8 C 0.126 3.874 9 C -0.122 4.122 10 C 0.123 3.877 11 N -0.709 5.709 12 C 0.533 3.467 13 O -0.566 6.566 14 C -0.110 4.110 15 S -0.181 6.181 16 C -0.528 4.528 17 H 0.064 0.936 18 C 0.047 3.953 19 N -0.917 5.917 20 Si 0.913 3.087 21 H -0.263 1.263 22 H -0.259 1.259 23 H -0.238 1.238 24 C 0.098 3.902 25 C -0.093 4.093 26 N -0.539 5.539 27 H 0.429 0.571 28 H 0.081 0.919 29 H 0.078 0.922 30 H 0.091 0.909 31 H 0.162 0.838 32 H 0.414 0.586 33 H 0.059 0.941 34 H 0.059 0.941 35 H 0.097 0.903 36 H 0.097 0.903 37 H 0.060 0.940 38 H 0.060 0.940 39 H 0.419 0.581 40 H 0.116 0.884 41 H 0.116 0.884 42 H 0.277 0.723 43 H 0.079 0.921 44 H 0.076 0.924 45 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.961 -35.721 0.083 41.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.094 4.094 3 C -0.204 4.204 4 C -0.277 4.277 5 C 0.373 3.627 6 O -0.474 6.474 7 N -0.366 5.366 8 C 0.002 3.998 9 C -0.160 4.160 10 C -0.002 4.002 11 N -0.364 5.364 12 C 0.318 3.682 13 O -0.444 6.444 14 C -0.261 4.261 15 S 0.046 5.954 16 C -0.676 4.676 17 H 0.082 0.918 18 C -0.158 4.158 19 N -0.555 5.555 20 Si 0.735 3.265 21 H -0.187 1.187 22 H -0.183 1.183 23 H -0.162 1.162 24 C -0.022 4.022 25 C -0.150 4.150 26 N -0.137 5.137 27 H 0.268 0.732 28 H 0.100 0.900 29 H 0.096 0.904 30 H 0.110 0.890 31 H 0.180 0.820 32 H 0.251 0.749 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.116 0.884 36 H 0.116 0.884 37 H 0.079 0.921 38 H 0.078 0.922 39 H 0.257 0.743 40 H 0.134 0.866 41 H 0.134 0.866 42 H 0.086 0.914 43 H 0.098 0.902 44 H 0.095 0.905 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -18.351 -36.548 0.082 40.896 hybrid contribution -1.304 0.967 -0.038 1.624 sum -19.655 -35.581 0.044 40.649 Atomic orbital electron populations 1.20445 0.85285 1.04619 1.03748 1.20752 0.94925 0.85554 1.08194 1.22058 0.89771 0.99226 1.09349 1.20194 0.93240 0.93005 1.21233 1.17724 0.87891 0.82280 0.74799 1.90724 1.30247 1.73243 1.53209 1.45585 1.10315 1.05305 1.75380 1.21104 0.87082 0.89661 1.01984 1.21798 0.96924 0.91745 1.05561 1.21222 0.97756 0.79059 1.02140 1.45654 1.09862 1.05567 1.75285 1.19993 0.85568 0.87320 0.75298 1.90700 1.20471 1.82950 1.50280 1.23271 1.01729 0.93467 1.07655 1.84771 1.12110 1.00927 1.97598 1.22466 0.95930 0.91008 1.58197 0.91797 1.25536 1.03485 0.93925 0.92899 1.70013 1.37883 0.98365 1.49194 0.85882 0.80068 0.80335 0.80184 1.18748 1.18334 1.16192 1.20497 0.86033 0.94260 1.01373 1.20536 0.93643 0.97152 1.03657 1.41580 1.04486 1.09841 1.57768 0.73157 0.90012 0.90358 0.88991 0.81999 0.74920 0.92234 0.92227 0.88435 0.88434 0.92149 0.92156 0.74294 0.86626 0.86592 0.91387 0.90204 0.90480 0.89265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.18 10.41 71.24 0.74 0.56 16 2 C 0.02 0.13 7.13 40.98 0.29 0.43 16 3 C -0.18 -2.17 10.45 23.62 0.25 -1.92 16 4 C -0.27 -4.74 6.29 -19.04 -0.12 -4.86 16 5 C 0.58 12.66 7.81 86.62 0.68 13.34 16 6 O -0.59 -17.15 14.81 -4.13 -0.06 -17.21 16 7 N -0.71 -10.89 5.55 -466.50 -2.59 -13.48 16 8 C 0.13 1.99 5.67 86.38 0.49 2.48 16 9 C -0.12 -1.33 5.44 30.59 0.17 -1.17 16 10 C 0.12 2.34 5.67 86.38 0.49 2.83 16 11 N -0.71 -15.30 5.56 -463.07 -2.57 -17.87 16 12 C 0.53 17.89 7.85 87.66 0.69 18.58 16 13 O -0.57 -24.30 15.86 -3.02 -0.05 -24.35 16 14 C -0.11 -4.05 6.16 71.24 0.44 -3.61 16 15 S -0.18 -9.13 18.55 -56.49 -1.05 -10.18 16 16 C -0.53 -30.68 10.04 67.95 0.68 -30.00 16 17 H 0.06 3.89 8.03 -2.91 -0.02 3.87 16 18 C 0.05 2.76 5.50 84.86 0.47 3.22 16 19 N -0.92 -55.72 13.97 21.65 0.30 -55.42 16 20 Si 0.91 45.20 27.74 68.60 1.90 47.11 16 21 H -0.26 -12.71 7.11 99.48 0.71 -12.00 16 22 H -0.26 -12.02 7.11 99.48 0.71 -11.31 16 23 H -0.24 -11.81 6.74 99.48 0.67 -11.14 16 24 C 0.10 1.45 7.17 41.78 0.30 1.75 16 25 C -0.09 -1.21 9.88 71.24 0.70 -0.50 16 26 N -0.54 -4.69 5.90 -171.07 -1.01 -5.70 16 27 H 0.43 0.93 8.96 -92.71 -0.83 0.10 16 28 H 0.08 0.09 8.14 -2.39 -0.02 0.07 16 29 H 0.08 -0.01 8.14 -2.39 -0.02 -0.03 16 30 H 0.09 0.08 8.14 -2.38 -0.02 0.06 16 31 H 0.16 1.15 7.70 -2.91 -0.02 1.13 16 32 H 0.41 3.80 7.60 -92.71 -0.70 3.10 16 33 H 0.06 1.10 8.14 -2.38 -0.02 1.09 16 34 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 36 H 0.10 0.76 8.14 -2.38 -0.02 0.74 16 37 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.06 1.32 8.14 -2.38 -0.02 1.30 16 39 H 0.42 5.86 8.47 -92.70 -0.79 5.08 16 40 H 0.12 3.84 8.14 -2.40 -0.02 3.82 16 41 H 0.12 3.85 8.14 -2.40 -0.02 3.83 16 42 H 0.28 15.57 8.31 -92.71 -0.77 14.80 16 43 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 44 H 0.08 1.45 6.46 -2.39 -0.02 1.43 16 45 H 0.09 0.63 8.14 -2.38 -0.02 0.61 16 Total: -1.00 -85.18 395.75 -0.18 -85.36 By element: Atomic # 1 Polarization: 11.94 SS G_CDS: -1.32 Total: 10.62 kcal Atomic # 6 Polarization: -5.13 SS G_CDS: 6.26 Total: 1.13 kcal Atomic # 7 Polarization: -86.61 SS G_CDS: -5.87 Total: -92.48 kcal Atomic # 8 Polarization: -41.45 SS G_CDS: -0.11 Total: -41.56 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 1.90 Total: 47.11 kcal Atomic # 16 Polarization: -9.13 SS G_CDS: -1.05 Total: -10.18 kcal Total: -85.18 -0.18 -85.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001293156107.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.808 kcal (2) G-P(sol) polarization free energy of solvation -85.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds