Wall clock time and date at job start Sat Apr 11 2020 05:38:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.39836 * 126.45482 * 2 1 4 4 C 1.35456 * 107.86308 * 179.71713 * 3 2 1 5 5 N 1.35536 * 108.87160 * 0.43207 * 4 3 2 6 6 C 1.46498 * 125.67731 * 179.82578 * 5 4 3 7 7 C 1.37655 * 108.63977 * 359.56429 * 5 4 3 8 8 C 1.46679 * 126.22821 * 180.23956 * 7 5 4 9 9 O 1.21697 * 119.99942 * 99.35078 * 8 7 5 10 10 N 1.34771 * 120.00422 * 279.34685 * 8 7 5 11 11 C 1.46501 * 120.00327 * 185.15675 * 10 8 7 12 12 C 1.52998 * 109.47292 * 179.97438 * 11 10 8 13 13 H 1.08995 * 109.47638 * 295.00451 * 12 11 10 14 14 C 1.53002 * 109.47389 * 174.99752 * 12 11 10 15 15 N 1.46501 * 109.46740 * 55.00138 * 12 11 10 16 16 C 1.34776 * 120.00195 * 204.99388 * 15 12 11 17 17 O 1.21288 * 119.99974 * 0.02562 * 16 15 12 18 18 C 1.50700 * 120.00417 * 180.02562 * 16 15 12 19 19 S 1.81002 * 109.47171 * 180.02562 * 18 16 15 20 20 C 1.76199 * 99.99772 * 179.97438 * 19 18 16 21 21 H 1.07998 * 120.00176 * 0.02562 * 20 19 18 22 22 C 1.38805 * 119.99876 * 179.97438 * 20 19 18 23 23 N 1.31623 * 119.99990 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 119.99961 * 180.02562 * 22 20 19 25 25 H 1.48506 * 109.47230 * 359.97438 * 24 22 20 26 26 H 1.48499 * 109.47535 * 120.00185 * 24 22 20 27 27 H 1.48504 * 109.47093 * 240.00114 * 24 22 20 28 28 H 1.09008 * 109.47317 * 270.02165 * 1 2 3 29 29 H 1.09003 * 109.47453 * 30.02092 * 1 2 3 30 30 H 1.09007 * 109.47489 * 150.02379 * 1 2 3 31 31 H 1.07997 * 126.07180 * 359.97438 * 3 2 1 32 32 H 1.07998 * 125.56630 * 180.25991 * 4 3 2 33 33 H 1.08997 * 109.47381 * 264.60434 * 6 5 4 34 34 H 1.08999 * 109.46671 * 144.60951 * 6 5 4 35 35 H 1.09001 * 109.47035 * 24.61336 * 6 5 4 36 36 H 0.97008 * 119.99971 * 5.15402 * 10 8 7 37 37 H 1.08996 * 109.47370 * 300.00057 * 11 10 8 38 38 H 1.08998 * 109.46971 * 60.00066 * 11 10 8 39 39 H 1.08998 * 109.46467 * 60.00028 * 14 12 11 40 40 H 1.08997 * 109.47235 * 180.02562 * 14 12 11 41 41 H 1.09003 * 109.47080 * 300.00718 * 14 12 11 42 42 H 0.97001 * 120.00427 * 25.00280 * 15 12 11 43 43 H 1.09001 * 109.46775 * 300.00318 * 18 16 15 44 44 H 1.08998 * 109.47350 * 60.00452 * 18 16 15 45 45 H 0.97000 * 120.00289 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3378 1.1247 0.0000 4 6 3.6217 0.6929 0.0064 5 7 3.6284 -0.6625 0.0007 6 6 4.8226 -1.5110 0.0011 7 6 2.3262 -1.1088 0.0004 8 6 1.8898 -2.5092 0.0001 9 8 1.5452 -3.0394 1.0398 10 7 1.8705 -3.2088 -1.1517 11 6 1.3289 -4.5699 -1.1731 12 6 1.4238 -5.1343 -2.5920 13 1 0.7803 -4.5574 -3.2563 14 6 0.9747 -6.5969 -2.5902 15 7 2.8096 -5.0495 -3.0596 16 6 3.0732 -4.9975 -4.3803 17 8 2.1632 -5.0205 -5.1817 18 6 4.4988 -4.9109 -4.8613 19 16 4.5228 -4.8562 -6.6703 20 6 6.2597 -4.7589 -6.9504 21 1 6.9419 -4.7492 -6.1132 22 6 6.7512 -4.6959 -8.2470 23 7 5.9197 -4.7083 -9.2673 24 14 8.5925 -4.5936 -8.5439 25 1 9.3049 -4.5949 -7.2408 26 1 9.0299 -5.7623 -9.3489 27 1 8.9068 -3.3414 -9.2779 28 1 -0.3634 0.0004 1.0277 29 1 -0.3634 0.8898 -0.5142 30 1 -0.3634 -0.8902 -0.5135 31 1 2.0136 2.1549 -0.0004 32 1 4.4972 1.3253 0.0120 33 1 5.0662 -1.7960 -1.0223 34 1 4.6314 -2.4068 0.5919 35 1 5.6585 -0.9616 0.4342 36 1 2.2151 -2.8110 -1.9666 37 1 1.9016 -5.1995 -0.4922 38 1 0.2853 -4.5506 -0.8591 39 1 -0.0563 -6.6599 -2.2423 40 1 1.0427 -6.9991 -3.6010 41 1 1.6182 -7.1737 -1.9259 42 1 3.5375 -5.0309 -2.4187 43 1 4.9618 -4.0075 -4.4646 44 1 5.0523 -5.7844 -4.5166 45 1 6.2631 -4.6646 -10.1734 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001295473152.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:28 Heat of formation + Delta-G solvation = -32.182130 kcal Electronic energy + Delta-G solvation = -26658.346448 eV Core-core repulsion = 22802.794011 eV Total energy + Delta-G solvation = -3855.552436 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.63456 -39.87577 -39.05266 -36.40791 -33.98585 -33.87453 -32.49094 -31.62619 -30.51403 -28.80941 -28.55969 -26.53773 -25.54955 -25.36709 -22.54250 -21.82053 -20.51294 -20.43855 -19.57141 -18.02692 -17.71803 -16.74078 -16.66432 -16.32436 -15.67852 -15.47427 -15.15937 -14.97017 -14.86197 -14.25833 -14.20215 -13.76984 -13.51315 -13.43500 -13.36496 -13.15537 -13.04164 -13.00566 -12.74496 -12.62865 -12.25934 -12.22742 -12.11877 -11.92396 -11.75886 -11.23021 -11.12193 -11.08421 -10.81287 -10.40295 -9.87191 -9.56499 -9.42128 -9.15007 -9.08233 -8.78147 -8.31975 -8.30674 -6.57003 -6.27914 -3.98905 1.63215 2.01398 2.60023 2.66378 2.89285 2.95298 3.09395 3.16743 3.23488 3.27257 3.60709 4.14111 4.32003 4.39506 4.48803 4.78999 4.79749 4.84352 5.01295 5.01863 5.07067 5.07393 5.08549 5.09751 5.28363 5.39300 5.48660 5.48928 5.55750 5.58603 5.77768 5.81886 5.83081 5.86700 5.95198 6.03567 6.11332 6.12701 6.48757 6.63289 6.79333 6.97517 7.11385 7.53154 7.55483 7.81766 8.28917 8.48011 9.17658 10.79511 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011120 B = 0.002722 C = 0.002359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2517.362406 B =10283.139984 C =11868.168933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.109 4.109 3 C -0.202 4.202 4 C 0.010 3.990 5 N -0.424 5.424 6 C 0.066 3.934 7 C -0.051 4.051 8 C 0.596 3.404 9 O -0.527 6.527 10 N -0.718 5.718 11 C 0.111 3.889 12 C 0.132 3.868 13 H 0.097 0.903 14 C -0.161 4.161 15 N -0.738 5.738 16 C 0.533 3.467 17 O -0.512 6.512 18 C -0.154 4.154 19 S -0.058 6.058 20 C -0.536 4.536 21 H 0.073 0.927 22 C 0.074 3.926 23 N -0.866 5.866 24 Si 0.919 3.081 25 H -0.272 1.272 26 H -0.279 1.279 27 H -0.280 1.280 28 H 0.066 0.934 29 H 0.068 0.932 30 H 0.057 0.943 31 H 0.142 0.858 32 H 0.168 0.832 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.091 0.909 36 H 0.408 0.592 37 H 0.076 0.924 38 H 0.085 0.915 39 H 0.067 0.933 40 H 0.071 0.929 41 H 0.059 0.941 42 H 0.397 0.603 43 H 0.088 0.912 44 H 0.089 0.911 45 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.143 6.527 20.996 22.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.117 4.117 3 C -0.226 4.226 4 C -0.124 4.124 5 N -0.099 5.099 6 C -0.076 4.076 7 C -0.164 4.164 8 C 0.380 3.620 9 O -0.402 6.402 10 N -0.371 5.371 11 C -0.013 4.013 12 C 0.027 3.973 13 H 0.115 0.885 14 C -0.220 4.220 15 N -0.393 5.393 16 C 0.319 3.681 17 O -0.386 6.386 18 C -0.305 4.305 19 S 0.168 5.832 20 C -0.684 4.684 21 H 0.091 0.909 22 C -0.136 4.136 23 N -0.502 5.502 24 Si 0.745 3.255 25 H -0.196 1.196 26 H -0.205 1.205 27 H -0.205 1.205 28 H 0.085 0.915 29 H 0.087 0.913 30 H 0.076 0.924 31 H 0.159 0.841 32 H 0.185 0.815 33 H 0.100 0.900 34 H 0.100 0.900 35 H 0.110 0.890 36 H 0.243 0.757 37 H 0.095 0.905 38 H 0.103 0.897 39 H 0.086 0.914 40 H 0.090 0.910 41 H 0.078 0.922 42 H 0.231 0.769 43 H 0.106 0.894 44 H 0.108 0.892 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -7.656 5.830 20.198 22.373 hybrid contribution 2.947 0.297 0.607 3.024 sum -4.709 6.126 20.805 22.194 Atomic orbital electron populations 1.20202 0.89755 1.02204 1.01961 1.19755 0.95313 0.90920 1.05716 1.20686 0.91692 0.98521 1.11683 1.21921 0.99520 0.82388 1.08544 1.43825 1.04943 1.06381 1.54758 1.22179 0.85926 0.95463 1.04009 1.19963 0.84176 0.93252 1.18993 1.17110 0.77741 0.83674 0.83468 1.90847 1.47950 1.69731 1.31706 1.46089 1.63390 1.15882 1.11727 1.21784 1.00559 0.82213 0.96707 1.21148 0.84625 0.97728 0.93837 0.88548 1.22114 1.01388 0.94907 1.03577 1.46150 1.07780 1.77834 1.07564 1.20341 0.91294 0.74976 0.81482 1.90719 1.46942 1.47240 1.53670 1.23535 0.94900 1.04781 1.07241 1.85427 1.09918 1.96372 0.91460 1.22890 0.91617 1.58801 0.95134 0.90931 1.24994 0.99059 0.94511 0.95007 1.70017 1.34557 1.46726 0.98869 0.86121 0.83023 0.77976 0.78389 1.19649 1.20527 1.20534 0.91507 0.91332 0.92351 0.84054 0.81477 0.90019 0.89972 0.89004 0.75687 0.90541 0.89705 0.91429 0.90973 0.92189 0.76889 0.89408 0.89228 0.92176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.80 10.20 36.00 0.37 -0.43 16 2 C -0.11 -1.22 6.21 -104.16 -0.65 -1.87 16 3 C -0.20 -1.97 10.76 -39.98 -0.43 -2.40 16 4 C 0.01 0.08 11.37 -16.91 -0.19 -0.11 16 5 N -0.42 -4.07 3.16 -120.24 -0.38 -4.45 16 6 C 0.07 0.44 10.89 59.85 0.65 1.09 16 7 C -0.05 -0.59 6.63 -81.98 -0.54 -1.13 16 8 C 0.60 7.04 6.75 -12.86 -0.09 6.96 16 9 O -0.53 -7.86 17.12 5.19 0.09 -7.77 16 10 N -0.72 -6.91 5.38 -61.62 -0.33 -7.24 16 11 C 0.11 0.97 5.24 -4.04 -0.02 0.95 16 12 C 0.13 1.32 2.73 -67.93 -0.19 1.13 16 13 H 0.10 1.13 7.58 -51.93 -0.39 0.74 16 14 C -0.16 -1.53 9.48 37.16 0.35 -1.18 16 15 N -0.74 -8.37 4.52 -53.81 -0.24 -8.61 16 16 C 0.53 8.92 7.81 -10.99 -0.09 8.83 16 17 O -0.51 -10.67 15.52 5.55 0.09 -10.58 16 18 C -0.15 -2.87 6.16 36.01 0.22 -2.65 16 19 S -0.06 -1.52 20.57 -107.50 -2.21 -3.73 16 20 C -0.54 -14.80 9.50 30.94 0.29 -14.51 16 21 H 0.07 1.90 7.80 -52.49 -0.41 1.49 16 22 C 0.07 2.05 5.49 -17.43 -0.10 1.96 16 23 N -0.87 -25.59 13.22 55.49 0.73 -24.86 16 24 Si 0.92 20.89 29.55 -169.99 -5.02 15.86 16 25 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 26 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 27 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 28 H 0.07 0.61 8.14 -51.92 -0.42 0.19 16 29 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.57 7.96 -51.93 -0.41 0.15 16 31 H 0.14 1.10 8.06 -52.49 -0.42 0.68 16 32 H 0.17 0.96 8.06 -52.49 -0.42 0.54 16 33 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.08 0.57 7.95 -51.93 -0.41 0.16 16 35 H 0.09 0.42 8.12 -51.93 -0.42 0.00 16 36 H 0.41 3.88 8.12 -40.82 -0.33 3.55 16 37 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 38 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 42 H 0.40 3.56 8.60 -40.82 -0.35 3.21 16 43 H 0.09 1.49 8.14 -51.91 -0.42 1.07 16 44 H 0.09 1.56 8.14 -51.92 -0.42 1.13 16 45 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 401.57 15.07 6.05 6.05 Total: -1.00 -36.16 401.57 -8.57 -44.73 By element: Atomic # 1 Polarization: 10.89 SS G_CDS: -6.94 Total: 3.95 kcal Atomic # 6 Polarization: -2.95 SS G_CDS: -0.40 Total: -3.35 kcal Atomic # 7 Polarization: -44.94 SS G_CDS: -0.22 Total: -45.16 kcal Atomic # 8 Polarization: -18.53 SS G_CDS: 0.18 Total: -18.36 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.86 kcal Atomic # 16 Polarization: -1.52 SS G_CDS: -2.21 Total: -3.73 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -36.16 -8.57 -44.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001295473152.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.549 kcal (2) G-P(sol) polarization free energy of solvation -36.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds