Wall clock time and date at job start Sat Apr 11 2020 05:38:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.39836 * 126.45482 * 2 1 4 4 C 1.35456 * 107.86308 * 179.71713 * 3 2 1 5 5 N 1.35536 * 108.87160 * 0.43207 * 4 3 2 6 6 C 1.46498 * 125.67731 * 179.82578 * 5 4 3 7 7 C 1.37655 * 108.63977 * 359.56429 * 5 4 3 8 8 C 1.46679 * 126.22821 * 180.23956 * 7 5 4 9 9 O 1.21697 * 119.99942 * 99.35078 * 8 7 5 10 10 N 1.34771 * 120.00422 * 279.34685 * 8 7 5 11 11 C 1.46501 * 120.00327 * 185.15675 * 10 8 7 12 12 C 1.52998 * 109.47292 * 179.97438 * 11 10 8 13 13 H 1.08995 * 109.47638 * 295.00451 * 12 11 10 14 14 C 1.53002 * 109.47389 * 174.99752 * 12 11 10 15 15 N 1.46501 * 109.46740 * 55.00138 * 12 11 10 16 16 C 1.34776 * 120.00195 * 204.99388 * 15 12 11 17 17 O 1.21288 * 119.99974 * 0.02562 * 16 15 12 18 18 C 1.50700 * 120.00417 * 180.02562 * 16 15 12 19 19 S 1.81002 * 109.47171 * 180.02562 * 18 16 15 20 20 C 1.76199 * 99.99772 * 179.97438 * 19 18 16 21 21 H 1.07998 * 120.00176 * 0.02562 * 20 19 18 22 22 C 1.38805 * 119.99876 * 179.97438 * 20 19 18 23 23 N 1.31623 * 119.99990 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 119.99961 * 180.02562 * 22 20 19 25 25 H 1.48506 * 109.47230 * 359.97438 * 24 22 20 26 26 H 1.48499 * 109.47535 * 120.00185 * 24 22 20 27 27 H 1.48504 * 109.47093 * 240.00114 * 24 22 20 28 28 H 1.09008 * 109.47317 * 270.02165 * 1 2 3 29 29 H 1.09003 * 109.47453 * 30.02092 * 1 2 3 30 30 H 1.09007 * 109.47489 * 150.02379 * 1 2 3 31 31 H 1.07997 * 126.07180 * 359.97438 * 3 2 1 32 32 H 1.07998 * 125.56630 * 180.25991 * 4 3 2 33 33 H 1.08997 * 109.47381 * 264.60434 * 6 5 4 34 34 H 1.08999 * 109.46671 * 144.60951 * 6 5 4 35 35 H 1.09001 * 109.47035 * 24.61336 * 6 5 4 36 36 H 0.97008 * 119.99971 * 5.15402 * 10 8 7 37 37 H 1.08996 * 109.47370 * 300.00057 * 11 10 8 38 38 H 1.08998 * 109.46971 * 60.00066 * 11 10 8 39 39 H 1.08998 * 109.46467 * 60.00028 * 14 12 11 40 40 H 1.08997 * 109.47235 * 180.02562 * 14 12 11 41 41 H 1.09003 * 109.47080 * 300.00718 * 14 12 11 42 42 H 0.97001 * 120.00427 * 25.00280 * 15 12 11 43 43 H 1.09001 * 109.46775 * 300.00318 * 18 16 15 44 44 H 1.08998 * 109.47350 * 60.00452 * 18 16 15 45 45 H 0.97000 * 120.00289 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3378 1.1247 0.0000 4 6 3.6217 0.6929 0.0064 5 7 3.6284 -0.6625 0.0007 6 6 4.8226 -1.5110 0.0011 7 6 2.3262 -1.1088 0.0004 8 6 1.8898 -2.5092 0.0001 9 8 1.5452 -3.0394 1.0398 10 7 1.8705 -3.2088 -1.1517 11 6 1.3289 -4.5699 -1.1731 12 6 1.4238 -5.1343 -2.5920 13 1 0.7803 -4.5574 -3.2563 14 6 0.9747 -6.5969 -2.5902 15 7 2.8096 -5.0495 -3.0596 16 6 3.0732 -4.9975 -4.3803 17 8 2.1632 -5.0205 -5.1817 18 6 4.4988 -4.9109 -4.8613 19 16 4.5228 -4.8562 -6.6703 20 6 6.2597 -4.7589 -6.9504 21 1 6.9419 -4.7492 -6.1132 22 6 6.7512 -4.6959 -8.2470 23 7 5.9197 -4.7083 -9.2673 24 14 8.5925 -4.5936 -8.5439 25 1 9.3049 -4.5949 -7.2408 26 1 9.0299 -5.7623 -9.3489 27 1 8.9068 -3.3414 -9.2779 28 1 -0.3634 0.0004 1.0277 29 1 -0.3634 0.8898 -0.5142 30 1 -0.3634 -0.8902 -0.5135 31 1 2.0136 2.1549 -0.0004 32 1 4.4972 1.3253 0.0120 33 1 5.0662 -1.7960 -1.0223 34 1 4.6314 -2.4068 0.5919 35 1 5.6585 -0.9616 0.4342 36 1 2.2151 -2.8110 -1.9666 37 1 1.9016 -5.1995 -0.4922 38 1 0.2853 -4.5506 -0.8591 39 1 -0.0563 -6.6599 -2.2423 40 1 1.0427 -6.9991 -3.6010 41 1 1.6182 -7.1737 -1.9259 42 1 3.5375 -5.0309 -2.4187 43 1 4.9618 -4.0075 -4.4646 44 1 5.0523 -5.7844 -4.5166 45 1 6.2631 -4.6646 -10.1734 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001295473152.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:27 Heat of formation + Delta-G solvation = -57.553121 kcal Electronic energy + Delta-G solvation = -26659.446617 eV Core-core repulsion = 22802.794011 eV Total energy + Delta-G solvation = -3856.652605 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.36246 -40.97976 -40.11279 -37.47959 -34.90169 -34.64116 -34.58016 -32.75689 -31.24086 -30.06372 -29.36759 -27.65693 -27.28812 -26.03515 -23.40123 -22.77903 -21.64991 -21.19010 -20.42675 -19.82637 -18.55904 -17.98005 -17.67938 -17.25659 -16.87948 -16.60322 -16.38796 -16.22761 -16.06052 -15.74033 -15.06886 -14.82390 -14.62984 -14.43104 -14.20532 -14.08706 -14.06337 -13.90807 -13.65897 -13.60222 -13.29297 -13.15395 -13.00673 -12.91933 -12.88963 -12.85225 -12.57606 -12.48555 -12.09250 -11.70354 -11.34950 -11.15905 -10.95933 -10.31879 -10.25793 -10.21226 -9.47681 -9.07284 -8.65530 -8.34769 -6.12018 0.87150 1.20013 1.27005 1.41142 1.47264 1.57407 1.60360 1.84371 1.93706 2.19204 2.27536 2.36992 2.99847 3.31994 3.49716 3.70169 3.87630 3.96676 4.01942 4.21004 4.22153 4.31217 4.32328 4.33316 4.40250 4.50798 4.54347 4.60861 4.65905 4.73785 4.79158 4.83895 4.98196 5.09542 5.12407 5.13940 5.30988 5.40644 5.42396 5.44564 5.90711 6.05659 6.20041 6.25240 6.35516 6.45549 6.94520 7.07179 7.22438 8.74463 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011120 B = 0.002722 C = 0.002359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2517.362406 B =10283.139984 C =11868.168933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.129 4.129 3 C -0.220 4.220 4 C 0.015 3.985 5 N -0.426 5.426 6 C 0.060 3.940 7 C -0.081 4.081 8 C 0.602 3.398 9 O -0.563 6.563 10 N -0.708 5.708 11 C 0.119 3.881 12 C 0.138 3.862 13 H 0.080 0.920 14 C -0.157 4.157 15 N -0.711 5.711 16 C 0.538 3.462 17 O -0.559 6.559 18 C -0.130 4.130 19 S -0.150 6.150 20 C -0.544 4.544 21 H 0.083 0.917 22 C 0.013 3.987 23 N -0.911 5.911 24 Si 0.997 3.003 25 H -0.256 1.256 26 H -0.276 1.276 27 H -0.275 1.275 28 H 0.066 0.934 29 H 0.081 0.919 30 H 0.050 0.950 31 H 0.157 0.843 32 H 0.200 0.800 33 H 0.088 0.912 34 H 0.077 0.923 35 H 0.116 0.884 36 H 0.409 0.591 37 H 0.089 0.911 38 H 0.093 0.907 39 H 0.088 0.912 40 H 0.043 0.957 41 H 0.075 0.925 42 H 0.414 0.586 43 H 0.111 0.889 44 H 0.108 0.892 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.283 6.987 22.900 24.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.137 4.137 3 C -0.244 4.244 4 C -0.119 4.119 5 N -0.101 5.101 6 C -0.081 4.081 7 C -0.194 4.194 8 C 0.387 3.613 9 O -0.441 6.441 10 N -0.360 5.360 11 C -0.004 4.004 12 C 0.033 3.967 13 H 0.098 0.902 14 C -0.216 4.216 15 N -0.366 5.366 16 C 0.324 3.676 17 O -0.436 6.436 18 C -0.281 4.281 19 S 0.078 5.922 20 C -0.692 4.692 21 H 0.101 0.899 22 C -0.191 4.191 23 N -0.548 5.548 24 Si 0.819 3.181 25 H -0.179 1.179 26 H -0.201 1.201 27 H -0.200 1.200 28 H 0.084 0.916 29 H 0.100 0.900 30 H 0.069 0.931 31 H 0.174 0.826 32 H 0.217 0.783 33 H 0.107 0.893 34 H 0.096 0.904 35 H 0.134 0.866 36 H 0.245 0.755 37 H 0.107 0.893 38 H 0.111 0.889 39 H 0.106 0.894 40 H 0.062 0.938 41 H 0.094 0.906 42 H 0.251 0.749 43 H 0.129 0.871 44 H 0.126 0.874 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -5.784 6.277 22.144 23.732 hybrid contribution 2.305 0.171 0.126 2.315 sum -3.479 6.448 22.270 23.444 Atomic orbital electron populations 1.20214 0.89317 1.02488 1.02003 1.20122 0.96101 0.91592 1.05914 1.20994 0.92108 0.99000 1.12260 1.22499 1.00377 0.82398 1.06639 1.44069 1.04967 1.06982 1.54104 1.22391 0.85611 0.95439 1.04624 1.20027 0.85396 0.93071 1.20859 1.17153 0.77041 0.83836 0.83225 1.90822 1.49831 1.70554 1.32921 1.46040 1.62649 1.16046 1.11239 1.21776 1.01310 0.81742 0.95587 1.21186 0.83089 0.98279 0.94150 0.90195 1.22075 1.03182 0.94066 1.02271 1.45854 1.09251 1.75616 1.05861 1.20007 0.89906 0.74881 0.82770 1.90715 1.47792 1.49796 1.55288 1.23374 0.96877 1.06708 1.01187 1.85607 1.10745 1.96696 0.99201 1.23225 0.91810 1.58378 0.95770 0.89906 1.26101 1.04470 0.93882 0.94695 1.70181 1.37089 1.48072 0.99421 0.84935 0.76375 0.77992 0.78831 1.17929 1.20136 1.20021 0.91559 0.90007 0.93081 0.82577 0.78318 0.89315 0.90439 0.86570 0.75479 0.89320 0.88900 0.89359 0.93817 0.90583 0.74932 0.87129 0.87392 0.92045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.56 10.20 71.23 0.73 -0.83 16 2 C -0.13 -2.81 6.21 -19.57 -0.12 -2.93 16 3 C -0.22 -3.99 10.76 22.01 0.24 -3.75 16 4 C 0.01 0.23 11.37 83.48 0.95 1.18 16 5 N -0.43 -7.45 3.16 -534.32 -1.69 -9.14 16 6 C 0.06 0.66 10.89 127.77 1.39 2.05 16 7 C -0.08 -1.79 6.63 40.35 0.27 -1.52 16 8 C 0.60 13.75 6.75 86.45 0.58 14.34 16 9 O -0.56 -16.49 17.12 -4.34 -0.07 -16.57 16 10 N -0.71 -12.66 5.38 -467.09 -2.51 -15.17 16 11 C 0.12 1.84 5.24 86.38 0.45 2.29 16 12 C 0.14 2.55 2.73 44.99 0.12 2.68 16 13 H 0.08 1.84 7.58 -2.39 -0.02 1.82 16 14 C -0.16 -2.73 9.48 71.98 0.68 -2.05 16 15 N -0.71 -14.82 4.52 -442.53 -2.00 -16.82 16 16 C 0.54 17.62 7.81 87.66 0.68 18.30 16 17 O -0.56 -23.68 15.52 -3.06 -0.05 -23.73 16 18 C -0.13 -4.71 6.16 71.24 0.44 -4.27 16 19 S -0.15 -7.95 20.57 -56.49 -1.16 -9.11 16 20 C -0.54 -29.95 9.50 67.96 0.65 -29.31 16 21 H 0.08 4.22 7.80 -2.91 -0.02 4.19 16 22 C 0.01 0.74 5.49 84.86 0.47 1.20 16 23 N -0.91 -54.83 13.22 21.65 0.29 -54.55 16 24 Si 1.00 42.38 29.55 68.60 2.03 44.41 16 25 H -0.26 -10.07 7.11 99.48 0.71 -9.37 16 26 H -0.28 -11.47 7.11 99.48 0.71 -10.76 16 27 H -0.27 -11.37 7.11 99.48 0.71 -10.67 16 28 H 0.07 1.22 8.14 -2.38 -0.02 1.20 16 29 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 30 H 0.05 1.00 7.96 -2.38 -0.02 0.98 16 31 H 0.16 2.19 8.06 -2.91 -0.02 2.17 16 32 H 0.20 1.61 8.06 -2.91 -0.02 1.59 16 33 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 34 H 0.08 0.94 7.95 -2.39 -0.02 0.92 16 35 H 0.12 0.70 8.12 -2.39 -0.02 0.68 16 36 H 0.41 7.24 8.12 -92.70 -0.75 6.48 16 37 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 38 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 39 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 40 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 41 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 42 H 0.41 6.18 8.60 -92.71 -0.80 5.38 16 43 H 0.11 3.50 8.14 -2.40 -0.02 3.48 16 44 H 0.11 3.53 8.14 -2.40 -0.02 3.51 16 45 H 0.27 15.11 8.31 -92.71 -0.77 14.34 16 Total: -1.00 -81.25 401.57 1.81 -79.44 By element: Atomic # 1 Polarization: 24.40 SS G_CDS: -0.54 Total: 23.86 kcal Atomic # 6 Polarization: -10.14 SS G_CDS: 7.53 Total: -2.62 kcal Atomic # 7 Polarization: -89.77 SS G_CDS: -5.92 Total: -95.68 kcal Atomic # 8 Polarization: -40.17 SS G_CDS: -0.12 Total: -40.29 kcal Atomic # 14 Polarization: 42.38 SS G_CDS: 2.03 Total: 44.41 kcal Atomic # 16 Polarization: -7.95 SS G_CDS: -1.16 Total: -9.11 kcal Total: -81.25 1.81 -79.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001295473152.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.884 kcal (2) G-P(sol) polarization free energy of solvation -81.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds