Wall clock time and date at job start Sat Apr 11 2020 05:38:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35450 * 125.56466 * 2 1 4 4 C 1.39839 * 107.86432 * 180.28289 * 3 2 1 5 5 C 1.50693 * 126.45710 * 179.74422 * 4 3 2 6 6 C 1.37872 * 107.08253 * 359.57595 * 4 3 2 7 7 C 1.46682 * 126.23272 * 180.11752 * 6 4 3 8 8 O 1.21696 * 119.99813 * 103.84979 * 7 6 4 9 9 N 1.34773 * 119.99872 * 283.85342 * 7 6 4 10 10 C 1.46493 * 120.00001 * 4.94026 * 9 7 6 11 11 C 1.46503 * 119.99935 * 184.94324 * 9 7 6 12 12 C 1.53001 * 109.46972 * 89.99417 * 11 9 7 13 13 N 1.46503 * 109.46972 * 179.97438 * 12 11 9 14 14 C 1.34771 * 120.00240 * 180.02562 * 13 12 11 15 15 O 1.21278 * 120.00089 * 0.02562 * 14 13 12 16 16 C 1.50703 * 120.00309 * 180.02562 * 14 13 12 17 17 S 1.80999 * 109.47292 * 180.02562 * 16 14 13 18 18 C 1.76200 * 99.99775 * 180.02562 * 17 16 14 19 19 H 1.07999 * 120.00516 * 359.97438 * 18 17 16 20 20 C 1.38802 * 119.99796 * 180.02562 * 18 17 16 21 21 N 1.31630 * 120.00005 * 180.02562 * 20 18 17 22 22 Si 1.86801 * 119.99924 * 359.97438 * 20 18 17 23 23 H 1.48498 * 109.47246 * 89.99886 * 22 20 18 24 24 H 1.48505 * 109.47158 * 210.00037 * 22 20 18 25 25 H 1.48507 * 109.47298 * 329.99707 * 22 20 18 26 26 N 1.35526 * 125.56206 * 180.02562 * 2 1 3 27 27 H 0.97004 * 125.68095 * 359.97438 * 26 2 1 28 28 H 1.08999 * 109.46967 * 89.97275 * 1 2 3 29 29 H 1.08995 * 109.47558 * 209.97421 * 1 2 3 30 30 H 1.09009 * 109.46899 * 329.98074 * 1 2 3 31 31 H 1.08003 * 126.06775 * 0.02562 * 3 2 1 32 32 H 1.08993 * 109.47482 * 90.02039 * 5 4 3 33 33 H 1.09000 * 109.47230 * 210.02460 * 5 4 3 34 34 H 1.09008 * 109.47371 * 330.02001 * 5 4 3 35 35 H 1.08998 * 109.47551 * 94.49641 * 10 9 7 36 36 H 1.09011 * 109.46779 * 214.49412 * 10 9 7 37 37 H 1.09003 * 109.47618 * 334.49014 * 10 9 7 38 38 H 1.08997 * 109.47272 * 209.99567 * 11 9 7 39 39 H 1.09003 * 109.46945 * 329.99749 * 11 9 7 40 40 H 1.08997 * 109.47245 * 300.00167 * 12 11 9 41 41 H 1.08994 * 109.47274 * 60.00417 * 12 11 9 42 42 H 0.97006 * 119.99747 * 0.02562 * 13 12 11 43 43 H 1.09001 * 109.47082 * 300.00569 * 16 14 13 44 44 H 1.09003 * 109.46940 * 60.00216 * 16 14 13 45 45 H 0.97005 * 119.99824 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2948 1.1018 0.0000 4 6 3.6270 0.6767 -0.0066 5 6 4.8486 1.5591 -0.0144 6 6 3.6122 -0.7020 -0.0007 7 6 4.7860 -1.5816 -0.0020 8 8 5.1259 -2.1441 1.0223 9 7 5.4880 -1.7669 -1.1374 10 6 5.1455 -1.0076 -2.3425 11 6 6.5936 -2.7276 -1.1665 12 6 6.0628 -4.1039 -1.5727 13 7 7.1685 -5.0645 -1.6024 14 6 6.9363 -6.3492 -1.9369 15 8 5.8120 -6.7101 -2.2137 16 6 8.0736 -7.3375 -1.9669 17 16 7.4459 -8.9653 -2.4490 18 6 8.9415 -9.8958 -2.4030 19 1 9.8693 -9.4139 -2.1320 20 6 8.9275 -11.2480 -2.7160 21 7 10.0446 -11.9432 -2.6812 22 14 7.3229 -12.0813 -3.1855 23 1 7.1308 -11.9931 -4.6553 24 1 7.3683 -13.5084 -2.7770 25 1 6.1940 -11.4052 -2.4972 26 7 2.2952 -1.1025 -0.0005 27 1 1.9833 -2.0210 -0.0006 28 1 -0.3633 0.0005 -1.0277 29 1 -0.3634 -0.8901 0.5134 30 1 -0.3633 0.8899 0.5142 31 1 1.9545 2.1268 0.0004 32 1 5.1488 1.7730 1.0113 33 1 5.6613 1.0499 -0.5322 34 1 4.6191 2.4928 -0.5280 35 1 5.7702 -0.1162 -2.4002 36 1 5.3149 -1.6276 -3.2229 37 1 4.0965 -0.7141 -2.3012 38 1 7.3415 -2.3992 -1.8882 39 1 7.0465 -2.7905 -0.1770 40 1 5.3149 -4.4323 -0.8510 41 1 5.6099 -4.0411 -2.5622 42 1 8.0678 -4.7758 -1.3813 43 1 8.8217 -7.0087 -2.6882 44 1 8.5262 -7.4008 -0.9773 45 1 10.0347 -12.8883 -2.8996 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001296008637.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:36 Heat of formation + Delta-G solvation = -31.962580 kcal Electronic energy + Delta-G solvation = -25954.738001 eV Core-core repulsion = 22099.195085 eV Total energy + Delta-G solvation = -3855.542916 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.86532 -39.89453 -39.14767 -36.36951 -34.59379 -33.28813 -32.44522 -31.96141 -30.70394 -28.76333 -28.07931 -27.42351 -26.09387 -25.59374 -23.37677 -21.11611 -20.85369 -20.50620 -19.28735 -18.09865 -17.89277 -17.05226 -16.45375 -16.34878 -15.80714 -15.47399 -15.21398 -15.00296 -14.92442 -14.28737 -13.98229 -13.81405 -13.70395 -13.59546 -13.43740 -13.30072 -13.28287 -13.17951 -12.81030 -12.75928 -12.69941 -12.38848 -12.35684 -12.23670 -11.81620 -11.52709 -11.27701 -11.01589 -10.63507 -10.47437 -9.87387 -9.61141 -9.19587 -9.13888 -9.06853 -8.99660 -8.51364 -8.32497 -6.92928 -6.29546 -4.01434 1.45827 1.85014 2.32596 2.52742 2.78242 2.93873 3.03548 3.31743 3.38657 3.49939 3.68590 4.14544 4.32454 4.42073 4.55286 4.63987 4.68933 4.71327 4.74985 4.78385 5.00463 5.00730 5.07081 5.09446 5.10810 5.25684 5.30259 5.33692 5.36748 5.40930 5.53822 5.61525 5.67038 5.69129 5.75700 5.92988 5.97856 6.00717 6.44391 6.48474 6.59694 6.80276 7.03806 7.53819 7.64978 7.93510 8.41084 8.44270 9.16572 10.79629 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.024463 B = 0.001838 C = 0.001757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.330968 B =15228.345298 C =15930.707524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.039 3.961 3 C -0.198 4.198 4 C -0.112 4.112 5 C -0.087 4.087 6 C -0.040 4.040 7 C 0.591 3.409 8 O -0.520 6.520 9 N -0.602 5.602 10 C 0.077 3.923 11 C 0.104 3.896 12 C 0.108 3.892 13 N -0.734 5.734 14 C 0.532 3.468 15 O -0.519 6.519 16 C -0.124 4.124 17 S -0.142 6.142 18 C -0.521 4.521 19 H 0.089 0.911 20 C 0.095 3.905 21 N -0.880 5.880 22 Si 0.857 3.143 23 H -0.267 1.267 24 H -0.274 1.274 25 H -0.236 1.236 26 N -0.526 5.526 27 H 0.419 0.581 28 H 0.075 0.925 29 H 0.066 0.934 30 H 0.083 0.917 31 H 0.141 0.859 32 H 0.066 0.934 33 H 0.059 0.941 34 H 0.069 0.931 35 H 0.063 0.937 36 H 0.074 0.926 37 H 0.078 0.922 38 H 0.089 0.911 39 H 0.095 0.905 40 H 0.067 0.933 41 H 0.067 0.933 42 H 0.401 0.599 43 H 0.098 0.902 44 H 0.099 0.901 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.167 31.569 2.586 34.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.077 4.077 3 C -0.223 4.223 4 C -0.120 4.120 5 C -0.144 4.144 6 C -0.154 4.154 7 C 0.377 3.623 8 O -0.395 6.395 9 N -0.336 5.336 10 C -0.066 4.066 11 C -0.019 4.019 12 C -0.017 4.017 13 N -0.390 5.390 14 C 0.318 3.682 15 O -0.394 6.394 16 C -0.274 4.274 17 S 0.084 5.916 18 C -0.669 4.669 19 H 0.107 0.893 20 C -0.113 4.113 21 N -0.516 5.516 22 Si 0.682 3.318 23 H -0.192 1.192 24 H -0.199 1.199 25 H -0.160 1.160 26 N -0.121 5.121 27 H 0.256 0.744 28 H 0.093 0.907 29 H 0.085 0.915 30 H 0.102 0.898 31 H 0.159 0.841 32 H 0.085 0.915 33 H 0.078 0.922 34 H 0.088 0.912 35 H 0.081 0.919 36 H 0.093 0.907 37 H 0.097 0.903 38 H 0.108 0.892 39 H 0.113 0.887 40 H 0.085 0.915 41 H 0.086 0.914 42 H 0.235 0.765 43 H 0.116 0.884 44 H 0.117 0.883 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -15.803 30.320 2.649 34.294 hybrid contribution 1.112 -0.445 0.130 1.205 sum -14.691 29.875 2.779 33.407 Atomic orbital electron populations 1.20393 0.87624 1.03596 1.02992 1.20463 0.93621 0.85977 1.07623 1.20471 0.91611 0.97818 1.12358 1.19769 0.95618 0.90567 1.06057 1.20253 0.93875 0.98125 1.02155 1.19733 0.83894 0.93744 1.18065 1.17256 0.82185 0.79724 0.83107 1.90885 1.68868 1.48013 1.31695 1.47605 1.33747 1.41029 1.11236 1.21909 1.02220 0.96077 0.86408 1.21644 0.88580 0.87414 1.04294 1.21548 0.90440 0.87654 1.02069 1.45783 1.11370 1.09160 1.72647 1.20291 0.90297 0.81879 0.75706 1.90699 1.23869 1.77991 1.46799 1.23276 0.99416 0.98839 1.05887 1.84793 1.16448 1.00072 1.90299 1.22315 0.93436 0.97006 1.54139 0.89340 1.24715 0.96770 0.96184 0.93654 1.69940 1.26332 1.08665 1.46695 0.86735 0.84792 0.79863 0.80451 1.19213 1.19923 1.15953 1.41711 1.04568 1.08819 1.57028 0.74392 0.90654 0.91544 0.89805 0.84127 0.91513 0.92161 0.91242 0.91867 0.90715 0.90287 0.89223 0.88661 0.91468 0.91441 0.76499 0.88375 0.88314 0.91936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.36 10.41 36.01 0.37 0.02 16 2 C 0.04 0.28 7.13 -81.95 -0.58 -0.31 16 3 C -0.20 -1.50 10.66 -39.98 -0.43 -1.93 16 4 C -0.11 -0.96 5.84 -104.16 -0.61 -1.57 16 5 C -0.09 -0.58 10.20 36.00 0.37 -0.22 16 6 C -0.04 -0.39 5.05 -81.98 -0.41 -0.80 16 7 C 0.59 6.65 7.17 -12.85 -0.09 6.56 16 8 O -0.52 -7.90 16.66 5.19 0.09 -7.81 16 9 N -0.60 -5.19 2.87 -183.12 -0.53 -5.72 16 10 C 0.08 0.45 9.92 59.84 0.59 1.04 16 11 C 0.10 0.88 5.58 -4.04 -0.02 0.86 16 12 C 0.11 1.24 6.00 -4.04 -0.02 1.22 16 13 N -0.73 -9.27 5.56 -60.30 -0.33 -9.60 16 14 C 0.53 9.50 7.85 -10.99 -0.09 9.42 16 15 O -0.52 -11.35 15.86 5.56 0.09 -11.27 16 16 C -0.12 -2.38 6.16 36.01 0.22 -2.16 16 17 S -0.14 -3.63 18.55 -107.50 -1.99 -5.62 16 18 C -0.52 -15.06 10.04 30.94 0.31 -14.75 16 19 H 0.09 2.66 8.03 -52.49 -0.42 2.23 16 20 C 0.10 2.80 5.50 -17.43 -0.10 2.71 16 21 N -0.88 -26.59 13.97 55.49 0.78 -25.82 16 22 Si 0.86 21.87 27.74 -169.99 -4.71 17.16 16 23 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 24 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 25 H -0.24 -6.02 6.74 56.52 0.38 -5.64 16 26 N -0.53 -4.29 6.10 -5.69 -0.03 -4.32 16 27 H 0.42 2.84 8.96 -40.82 -0.37 2.47 16 28 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 29 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.08 0.26 8.14 -51.92 -0.42 -0.17 16 31 H 0.14 0.80 8.06 -52.48 -0.42 0.38 16 32 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 33 H 0.06 0.39 6.97 -51.93 -0.36 0.03 16 34 H 0.07 0.35 8.14 -51.92 -0.42 -0.07 16 35 H 0.06 0.28 7.49 -51.93 -0.39 -0.11 16 36 H 0.07 0.37 8.11 -51.92 -0.42 -0.05 16 37 H 0.08 0.49 6.49 -51.93 -0.34 0.15 16 38 H 0.09 0.53 8.07 -51.93 -0.42 0.11 16 39 H 0.10 0.91 7.36 -51.93 -0.38 0.53 16 40 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 41 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 42 H 0.40 3.74 8.47 -40.82 -0.35 3.40 16 43 H 0.10 1.73 8.14 -51.92 -0.42 1.30 16 44 H 0.10 1.78 8.14 -51.92 -0.42 1.36 16 45 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 395.35 15.07 5.96 5.96 Total: -1.00 -37.87 395.35 -8.01 -45.88 By element: Atomic # 1 Polarization: 7.92 SS G_CDS: -6.83 Total: 1.09 kcal Atomic # 6 Polarization: 0.56 SS G_CDS: -0.49 Total: 0.08 kcal Atomic # 7 Polarization: -45.34 SS G_CDS: -0.12 Total: -45.46 kcal Atomic # 8 Polarization: -19.25 SS G_CDS: 0.17 Total: -19.08 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -4.71 Total: 17.16 kcal Atomic # 16 Polarization: -3.63 SS G_CDS: -1.99 Total: -5.62 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -37.87 -8.01 -45.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001296008637.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.917 kcal (2) G-P(sol) polarization free energy of solvation -37.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds