Wall clock time and date at job start Sat Apr 11 2020 05:38:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35450 * 125.56466 * 2 1 4 4 C 1.39839 * 107.86432 * 180.28289 * 3 2 1 5 5 C 1.50693 * 126.45710 * 179.74422 * 4 3 2 6 6 C 1.37872 * 107.08253 * 359.57595 * 4 3 2 7 7 C 1.46682 * 126.23272 * 180.11752 * 6 4 3 8 8 O 1.21696 * 119.99813 * 103.84979 * 7 6 4 9 9 N 1.34773 * 119.99872 * 283.85342 * 7 6 4 10 10 C 1.46493 * 120.00001 * 4.94026 * 9 7 6 11 11 C 1.46503 * 119.99935 * 184.94324 * 9 7 6 12 12 C 1.53001 * 109.46972 * 89.99417 * 11 9 7 13 13 N 1.46503 * 109.46972 * 179.97438 * 12 11 9 14 14 C 1.34771 * 120.00240 * 180.02562 * 13 12 11 15 15 O 1.21278 * 120.00089 * 0.02562 * 14 13 12 16 16 C 1.50703 * 120.00309 * 180.02562 * 14 13 12 17 17 S 1.80999 * 109.47292 * 180.02562 * 16 14 13 18 18 C 1.76200 * 99.99775 * 180.02562 * 17 16 14 19 19 H 1.07999 * 120.00516 * 359.97438 * 18 17 16 20 20 C 1.38802 * 119.99796 * 180.02562 * 18 17 16 21 21 N 1.31630 * 120.00005 * 180.02562 * 20 18 17 22 22 Si 1.86801 * 119.99924 * 359.97438 * 20 18 17 23 23 H 1.48498 * 109.47246 * 89.99886 * 22 20 18 24 24 H 1.48505 * 109.47158 * 210.00037 * 22 20 18 25 25 H 1.48507 * 109.47298 * 329.99707 * 22 20 18 26 26 N 1.35526 * 125.56206 * 180.02562 * 2 1 3 27 27 H 0.97004 * 125.68095 * 359.97438 * 26 2 1 28 28 H 1.08999 * 109.46967 * 89.97275 * 1 2 3 29 29 H 1.08995 * 109.47558 * 209.97421 * 1 2 3 30 30 H 1.09009 * 109.46899 * 329.98074 * 1 2 3 31 31 H 1.08003 * 126.06775 * 0.02562 * 3 2 1 32 32 H 1.08993 * 109.47482 * 90.02039 * 5 4 3 33 33 H 1.09000 * 109.47230 * 210.02460 * 5 4 3 34 34 H 1.09008 * 109.47371 * 330.02001 * 5 4 3 35 35 H 1.08998 * 109.47551 * 94.49641 * 10 9 7 36 36 H 1.09011 * 109.46779 * 214.49412 * 10 9 7 37 37 H 1.09003 * 109.47618 * 334.49014 * 10 9 7 38 38 H 1.08997 * 109.47272 * 209.99567 * 11 9 7 39 39 H 1.09003 * 109.46945 * 329.99749 * 11 9 7 40 40 H 1.08997 * 109.47245 * 300.00167 * 12 11 9 41 41 H 1.08994 * 109.47274 * 60.00417 * 12 11 9 42 42 H 0.97006 * 119.99747 * 0.02562 * 13 12 11 43 43 H 1.09001 * 109.47082 * 300.00569 * 16 14 13 44 44 H 1.09003 * 109.46940 * 60.00216 * 16 14 13 45 45 H 0.97005 * 119.99824 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2948 1.1018 0.0000 4 6 3.6270 0.6767 -0.0066 5 6 4.8486 1.5591 -0.0144 6 6 3.6122 -0.7020 -0.0007 7 6 4.7860 -1.5816 -0.0020 8 8 5.1259 -2.1441 1.0223 9 7 5.4880 -1.7669 -1.1374 10 6 5.1455 -1.0076 -2.3425 11 6 6.5936 -2.7276 -1.1665 12 6 6.0628 -4.1039 -1.5727 13 7 7.1685 -5.0645 -1.6024 14 6 6.9363 -6.3492 -1.9369 15 8 5.8120 -6.7101 -2.2137 16 6 8.0736 -7.3375 -1.9669 17 16 7.4459 -8.9653 -2.4490 18 6 8.9415 -9.8958 -2.4030 19 1 9.8693 -9.4139 -2.1320 20 6 8.9275 -11.2480 -2.7160 21 7 10.0446 -11.9432 -2.6812 22 14 7.3229 -12.0813 -3.1855 23 1 7.1308 -11.9931 -4.6553 24 1 7.3683 -13.5084 -2.7770 25 1 6.1940 -11.4052 -2.4972 26 7 2.2952 -1.1025 -0.0005 27 1 1.9833 -2.0210 -0.0006 28 1 -0.3633 0.0005 -1.0277 29 1 -0.3634 -0.8901 0.5134 30 1 -0.3633 0.8899 0.5142 31 1 1.9545 2.1268 0.0004 32 1 5.1488 1.7730 1.0113 33 1 5.6613 1.0499 -0.5322 34 1 4.6191 2.4928 -0.5280 35 1 5.7702 -0.1162 -2.4002 36 1 5.3149 -1.6276 -3.2229 37 1 4.0965 -0.7141 -2.3012 38 1 7.3415 -2.3992 -1.8882 39 1 7.0465 -2.7905 -0.1770 40 1 5.3149 -4.4323 -0.8510 41 1 5.6099 -4.0411 -2.5622 42 1 8.0678 -4.7758 -1.3813 43 1 8.8217 -7.0087 -2.6882 44 1 8.5262 -7.4008 -0.9773 45 1 10.0347 -12.8883 -2.8996 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001296008637.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:35 Heat of formation + Delta-G solvation = -59.634237 kcal Electronic energy + Delta-G solvation = -25955.937934 eV Core-core repulsion = 22099.195085 eV Total energy + Delta-G solvation = -3856.742849 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.47897 -40.88652 -40.33190 -37.28935 -35.70969 -34.68195 -33.86654 -32.54201 -31.85990 -29.86730 -28.59419 -28.02994 -27.87411 -26.76902 -24.22654 -22.07231 -21.61347 -21.38406 -20.03333 -19.82229 -18.74776 -18.09804 -17.70037 -17.43511 -17.09320 -16.83698 -16.42622 -16.19487 -15.60091 -15.56630 -15.26268 -14.95567 -14.74798 -14.66317 -14.26103 -14.14481 -13.97525 -13.85225 -13.70369 -13.58544 -13.36722 -13.27384 -13.24647 -13.05625 -13.02176 -12.86849 -12.67010 -12.45417 -12.31965 -11.88789 -11.36362 -11.18238 -11.11050 -10.55611 -10.26478 -9.94250 -9.71395 -9.01517 -8.91904 -8.52583 -6.23680 0.81696 0.93595 1.11968 1.29919 1.44930 1.49856 1.52774 1.72603 1.90237 2.21680 2.25219 2.53290 2.72011 2.85557 3.49734 3.71513 3.87113 3.92377 3.98125 4.16564 4.21713 4.22476 4.29441 4.31985 4.45443 4.58904 4.61322 4.63863 4.76192 4.80495 4.83664 4.86333 4.91402 5.03952 5.12842 5.18325 5.20987 5.37397 5.40993 5.69798 5.92404 6.02039 6.09120 6.10634 6.38307 6.49199 6.85784 6.92540 7.11973 8.59676 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.024463 B = 0.001838 C = 0.001757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.330968 B =15228.345298 C =15930.707524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.044 3.956 3 C -0.213 4.213 4 C -0.114 4.114 5 C -0.086 4.086 6 C -0.071 4.071 7 C 0.590 3.410 8 O -0.572 6.572 9 N -0.595 5.595 10 C 0.074 3.926 11 C 0.110 3.890 12 C 0.114 3.886 13 N -0.708 5.708 14 C 0.536 3.464 15 O -0.564 6.564 16 C -0.110 4.110 17 S -0.178 6.178 18 C -0.529 4.529 19 H 0.064 0.936 20 C 0.045 3.955 21 N -0.916 5.916 22 Si 0.914 3.086 23 H -0.261 1.261 24 H -0.259 1.259 25 H -0.239 1.239 26 N -0.530 5.530 27 H 0.421 0.579 28 H 0.087 0.913 29 H 0.070 0.930 30 H 0.097 0.903 31 H 0.159 0.841 32 H 0.060 0.940 33 H 0.061 0.939 34 H 0.088 0.912 35 H 0.083 0.917 36 H 0.088 0.912 37 H 0.075 0.925 38 H 0.128 0.872 39 H 0.086 0.914 40 H 0.038 0.962 41 H 0.071 0.929 42 H 0.421 0.579 43 H 0.120 0.880 44 H 0.114 0.886 45 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.096 33.851 1.717 37.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.073 4.073 3 C -0.237 4.237 4 C -0.122 4.122 5 C -0.144 4.144 6 C -0.184 4.184 7 C 0.377 3.623 8 O -0.451 6.451 9 N -0.327 5.327 10 C -0.068 4.068 11 C -0.013 4.013 12 C -0.011 4.011 13 N -0.363 5.363 14 C 0.322 3.678 15 O -0.442 6.442 16 C -0.261 4.261 17 S 0.048 5.952 18 C -0.676 4.676 19 H 0.082 0.918 20 C -0.160 4.160 21 N -0.554 5.554 22 Si 0.736 3.264 23 H -0.185 1.185 24 H -0.184 1.184 25 H -0.163 1.163 26 N -0.126 5.126 27 H 0.259 0.741 28 H 0.105 0.895 29 H 0.089 0.911 30 H 0.115 0.885 31 H 0.177 0.823 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.107 0.893 35 H 0.101 0.899 36 H 0.107 0.893 37 H 0.094 0.906 38 H 0.146 0.854 39 H 0.104 0.896 40 H 0.056 0.944 41 H 0.089 0.911 42 H 0.258 0.742 43 H 0.138 0.862 44 H 0.132 0.868 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -16.690 32.660 1.759 36.720 hybrid contribution 1.420 -0.973 0.424 1.773 sum -15.270 31.687 2.183 35.242 Atomic orbital electron populations 1.20504 0.85461 1.04476 1.04017 1.21019 0.94969 0.85507 1.05802 1.20782 0.91278 0.98884 1.12735 1.20092 0.96744 0.90299 1.05048 1.20302 0.93271 0.98698 1.02087 1.19684 0.84042 0.94094 1.20612 1.17560 0.82510 0.79225 0.82986 1.90847 1.70281 1.50322 1.33609 1.47696 1.33113 1.40471 1.11436 1.22109 1.02537 0.96755 0.85392 1.21636 0.88999 0.85815 1.04834 1.21576 0.89480 0.88619 1.01463 1.45495 1.12900 1.07537 1.70340 1.20002 0.88975 0.83101 0.75747 1.90690 1.25222 1.79006 1.49328 1.23263 1.00290 0.95412 1.07152 1.84736 1.15486 1.04098 1.90865 1.22453 0.93936 0.97644 1.53579 0.91798 1.25561 0.99828 0.96929 0.93687 1.70016 1.28231 1.09347 1.47765 0.85871 0.80783 0.79391 0.80339 1.18536 1.18363 1.16284 1.41814 1.04335 1.09355 1.57144 0.74121 0.89455 0.91118 0.88465 0.82319 0.92081 0.91994 0.89330 0.89863 0.89320 0.90627 0.85425 0.89594 0.94383 0.91075 0.74161 0.86202 0.86799 0.91359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.54 10.41 71.24 0.74 0.20 16 2 C 0.04 0.56 7.13 41.35 0.29 0.86 16 3 C -0.21 -2.90 10.66 22.01 0.23 -2.66 16 4 C -0.11 -1.84 5.84 -19.57 -0.11 -1.95 16 5 C -0.09 -1.04 10.20 71.23 0.73 -0.31 16 6 C -0.07 -1.36 5.05 40.35 0.20 -1.16 16 7 C 0.59 13.30 7.17 86.45 0.62 13.92 16 8 O -0.57 -17.98 16.66 -4.33 -0.07 -18.05 16 9 N -0.60 -9.50 2.87 -851.50 -2.45 -11.94 16 10 C 0.07 0.69 9.92 127.77 1.27 1.96 16 11 C 0.11 1.65 5.58 86.38 0.48 2.14 16 12 C 0.11 2.46 6.00 86.38 0.52 2.98 16 13 N -0.71 -16.45 5.56 -463.07 -2.57 -19.02 16 14 C 0.54 18.45 7.85 87.66 0.69 19.14 16 15 O -0.56 -24.47 15.86 -3.02 -0.05 -24.52 16 16 C -0.11 -4.11 6.16 71.24 0.44 -3.67 16 17 S -0.18 -9.04 18.55 -56.49 -1.05 -10.09 16 18 C -0.53 -30.79 10.04 67.95 0.68 -30.11 16 19 H 0.06 3.91 8.03 -2.91 -0.02 3.88 16 20 C 0.05 2.67 5.50 84.86 0.47 3.14 16 21 N -0.92 -55.80 13.97 21.65 0.30 -55.49 16 22 Si 0.91 45.19 27.74 68.60 1.90 47.09 16 23 H -0.26 -12.51 7.11 99.48 0.71 -11.80 16 24 H -0.26 -12.03 7.11 99.48 0.71 -11.33 16 25 H -0.24 -11.85 6.74 99.48 0.67 -11.18 16 26 N -0.53 -8.51 6.10 -171.93 -1.05 -9.56 16 27 H 0.42 5.83 8.96 -92.71 -0.83 4.99 16 28 H 0.09 0.37 8.14 -2.39 -0.02 0.35 16 29 H 0.07 0.40 8.14 -2.39 -0.02 0.38 16 30 H 0.10 0.36 8.14 -2.38 -0.02 0.35 16 31 H 0.16 1.46 8.06 -2.91 -0.02 1.44 16 32 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.06 0.70 6.97 -2.39 -0.02 0.68 16 34 H 0.09 0.69 8.14 -2.38 -0.02 0.67 16 35 H 0.08 0.48 7.49 -2.39 -0.02 0.47 16 36 H 0.09 0.61 8.11 -2.38 -0.02 0.59 16 37 H 0.07 0.81 6.49 -2.39 -0.02 0.79 16 38 H 0.13 1.00 8.07 -2.39 -0.02 0.98 16 39 H 0.09 1.53 7.36 -2.39 -0.02 1.51 16 40 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 41 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 42 H 0.42 6.61 8.47 -92.70 -0.79 5.83 16 43 H 0.12 3.97 8.14 -2.40 -0.02 3.95 16 44 H 0.11 3.93 8.14 -2.39 -0.02 3.91 16 45 H 0.28 15.60 8.31 -92.70 -0.77 14.83 16 Total: -1.00 -84.07 395.35 1.59 -82.48 By element: Atomic # 1 Polarization: 15.27 SS G_CDS: -0.63 Total: 14.64 kcal Atomic # 6 Polarization: -2.78 SS G_CDS: 7.25 Total: 4.47 kcal Atomic # 7 Polarization: -90.25 SS G_CDS: -5.77 Total: -96.02 kcal Atomic # 8 Polarization: -42.46 SS G_CDS: -0.12 Total: -42.58 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 1.90 Total: 47.09 kcal Atomic # 16 Polarization: -9.04 SS G_CDS: -1.05 Total: -10.09 kcal Total: -84.07 1.59 -82.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001296008637.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.843 kcal (2) G-P(sol) polarization free energy of solvation -84.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds