Wall clock time and date at job start Sat Apr 11 2020 05:38:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35460 * 125.56462 * 2 1 4 4 C 1.39833 * 107.86340 * 180.02562 * 3 2 1 5 5 C 1.37873 * 107.08780 * 359.97438 * 4 3 2 6 6 C 1.46675 * 126.23176 * 179.97438 * 5 4 3 7 7 O 1.21698 * 119.99945 * 185.64987 * 6 5 4 8 8 N 1.34778 * 120.00098 * 5.64731 * 6 5 4 9 9 C 1.46500 * 119.99666 * 185.09525 * 8 6 5 10 10 H 1.08995 * 109.47689 * 35.00099 * 9 8 6 11 11 C 1.53002 * 109.47025 * 275.00063 * 9 8 6 12 12 C 1.52998 * 109.47074 * 155.00289 * 9 8 6 13 13 N 1.46499 * 109.47271 * 305.00245 * 12 9 8 14 14 C 1.34767 * 120.00417 * 179.97438 * 13 12 9 15 15 O 1.21282 * 119.99862 * 359.97438 * 14 13 12 16 16 C 1.50701 * 120.00411 * 179.97438 * 14 13 12 17 17 S 1.81000 * 109.47314 * 180.02562 * 16 14 13 18 18 C 1.76200 * 99.99741 * 180.02562 * 17 16 14 19 19 H 1.07995 * 120.00526 * 359.97438 * 18 17 16 20 20 C 1.38801 * 119.99827 * 180.02562 * 18 17 16 21 21 N 1.31628 * 120.00123 * 180.02562 * 20 18 17 22 22 Si 1.86802 * 120.00233 * 359.97438 * 20 18 17 23 23 H 1.48502 * 109.46805 * 89.99840 * 22 20 18 24 24 H 1.48492 * 109.47361 * 210.00417 * 22 20 18 25 25 H 1.48502 * 109.47014 * 330.00741 * 22 20 18 26 26 N 1.35527 * 125.56431 * 180.02562 * 2 1 3 27 27 C 1.46498 * 125.67715 * 359.94117 * 26 2 1 28 28 H 1.09000 * 109.46393 * 89.97646 * 1 2 3 29 29 H 1.08993 * 109.47555 * 209.97577 * 1 2 3 30 30 H 1.09005 * 109.46971 * 329.98402 * 1 2 3 31 31 H 1.08001 * 126.06536 * 0.05302 * 3 2 1 32 32 H 1.07997 * 126.45580 * 179.74131 * 4 3 2 33 33 H 0.96992 * 119.99848 * 5.10247 * 8 6 5 34 34 H 1.09004 * 109.47267 * 60.00552 * 11 9 8 35 35 H 1.09001 * 109.47221 * 180.02562 * 11 9 8 36 36 H 1.08996 * 109.47650 * 300.00391 * 11 9 8 37 37 H 1.09011 * 109.47132 * 64.99907 * 12 9 8 38 38 H 1.08999 * 109.47553 * 184.99838 * 12 9 8 39 39 H 0.97009 * 119.99616 * 359.97438 * 13 12 9 40 40 H 1.09005 * 109.47040 * 299.99651 * 16 14 13 41 41 H 1.08999 * 109.46987 * 59.99593 * 16 14 13 42 42 H 0.97001 * 120.00511 * 179.97438 * 21 20 18 43 43 H 1.08999 * 109.47528 * 85.82999 * 27 26 2 44 44 H 1.09006 * 109.46653 * 205.83245 * 27 26 2 45 45 H 1.08994 * 109.47304 * 325.82701 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2949 1.1019 0.0000 4 6 3.6270 0.6767 -0.0006 5 6 3.6122 -0.7019 -0.0004 6 6 4.7860 -1.5815 -0.0013 7 8 4.6439 -2.7857 -0.1048 8 7 6.0219 -1.0560 0.1123 9 6 7.1988 -1.9211 -0.0006 10 1 7.0033 -2.7074 -0.7296 11 6 7.5009 -2.5514 1.3605 12 6 8.4004 -1.0907 -0.4561 13 7 8.0677 -0.3918 -1.6998 14 6 8.9804 0.4051 -2.2899 15 8 10.0771 0.5441 -1.7909 16 6 8.6384 1.1237 -3.5697 17 16 10.0598 2.1062 -4.1084 18 6 9.4002 2.8174 -5.5794 19 1 8.3907 2.5861 -5.8855 20 6 10.1785 3.6741 -6.3455 21 7 9.6857 4.2058 -7.4441 22 14 11.9250 4.0737 -5.8166 23 1 12.8611 3.0887 -6.4155 24 1 12.2816 5.4394 -6.2778 25 1 12.0206 4.0104 -4.3360 26 7 2.2953 -1.1025 -0.0005 27 6 1.8241 -2.4896 0.0001 28 1 -0.3632 0.0004 -1.0277 29 1 -0.3634 -0.8901 0.5134 30 1 -0.3633 0.8899 0.5141 31 1 1.9545 2.1269 0.0008 32 1 4.5024 1.3091 -0.0047 33 1 6.1321 -0.1052 0.2689 34 1 6.6449 -3.1431 1.6850 35 1 8.3768 -3.1947 1.2766 36 1 7.6965 -1.7652 2.0896 37 1 8.6513 -0.3616 0.3145 38 1 9.2532 -1.7481 -0.6256 39 1 7.1904 -0.5026 -2.0987 40 1 8.3883 0.3943 -4.3402 41 1 7.7852 1.7806 -3.4006 42 1 10.2294 4.8048 -7.9793 43 1 1.6357 -2.8098 -1.0246 44 1 2.5836 -3.1310 0.4474 45 1 0.9028 -2.5602 0.5781 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001298533217.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:48 Heat of formation + Delta-G solvation = -33.979925 kcal Electronic energy + Delta-G solvation = -26331.240131 eV Core-core repulsion = 22475.609737 eV Total energy + Delta-G solvation = -3855.630395 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.78325 -39.92945 -39.05515 -36.53469 -33.96096 -33.15660 -32.43942 -32.30186 -31.18826 -29.53074 -27.03442 -26.78875 -26.03720 -25.52938 -22.85860 -21.54679 -20.57435 -20.47775 -19.52781 -18.25953 -17.72176 -16.77129 -16.41451 -16.20726 -16.07847 -15.53098 -15.13481 -14.96719 -14.80877 -14.58373 -13.95674 -13.77824 -13.61633 -13.56319 -13.44700 -13.21686 -13.08669 -13.02330 -12.86686 -12.78956 -12.35459 -12.33288 -12.26421 -12.11460 -11.93733 -11.35824 -11.26481 -11.01049 -10.61239 -10.26603 -9.86581 -9.62125 -9.49762 -9.07989 -9.03634 -8.99368 -8.50896 -8.35046 -6.92294 -6.28848 -4.00780 1.15053 2.25318 2.39279 2.73165 2.92147 3.01479 3.09988 3.29717 3.33909 3.50161 3.64224 4.28252 4.32952 4.41431 4.47546 4.51993 4.71220 4.73339 4.78568 4.86298 4.92454 5.10148 5.10895 5.14561 5.19592 5.24004 5.27276 5.28890 5.36871 5.46067 5.55521 5.66125 5.75665 5.80274 5.86193 5.89523 6.00938 6.10189 6.43471 6.50027 6.70008 6.88522 7.15496 7.53329 7.86133 7.94206 8.42019 8.43507 9.17210 10.80413 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.012773 B = 0.002417 C = 0.002109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2191.637076 B =11583.850937 C =13275.701867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.043 3.957 3 C -0.204 4.204 4 C -0.132 4.132 5 C -0.060 4.060 6 C 0.594 3.406 7 O -0.550 6.550 8 N -0.716 5.716 9 C 0.136 3.864 10 H 0.096 0.904 11 C -0.161 4.161 12 C 0.113 3.887 13 N -0.738 5.738 14 C 0.532 3.468 15 O -0.518 6.518 16 C -0.125 4.125 17 S -0.141 6.141 18 C -0.521 4.521 19 H 0.088 0.912 20 C 0.095 3.905 21 N -0.880 5.880 22 Si 0.857 3.143 23 H -0.267 1.267 24 H -0.274 1.274 25 H -0.235 1.235 26 N -0.407 5.407 27 C 0.064 3.936 28 H 0.076 0.924 29 H 0.064 0.936 30 H 0.084 0.916 31 H 0.143 0.857 32 H 0.145 0.855 33 H 0.406 0.594 34 H 0.066 0.934 35 H 0.071 0.929 36 H 0.062 0.938 37 H 0.074 0.926 38 H 0.084 0.916 39 H 0.401 0.599 40 H 0.097 0.903 41 H 0.098 0.902 42 H 0.271 0.729 43 H 0.076 0.924 44 H 0.104 0.896 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.876 -12.665 19.547 29.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.074 4.074 3 C -0.228 4.228 4 C -0.159 4.159 5 C -0.173 4.173 6 C 0.383 3.617 7 O -0.429 6.429 8 N -0.368 5.368 9 C 0.031 3.969 10 H 0.114 0.886 11 C -0.219 4.219 12 C -0.012 4.012 13 N -0.393 5.393 14 C 0.318 3.682 15 O -0.393 6.393 16 C -0.275 4.275 17 S 0.085 5.915 18 C -0.669 4.669 19 H 0.106 0.894 20 C -0.113 4.113 21 N -0.517 5.517 22 Si 0.682 3.318 23 H -0.192 1.192 24 H -0.199 1.199 25 H -0.159 1.159 26 N -0.081 5.081 27 C -0.077 4.077 28 H 0.094 0.906 29 H 0.083 0.917 30 H 0.102 0.898 31 H 0.161 0.839 32 H 0.163 0.837 33 H 0.242 0.758 34 H 0.085 0.915 35 H 0.090 0.910 36 H 0.081 0.919 37 H 0.093 0.907 38 H 0.102 0.898 39 H 0.235 0.765 40 H 0.115 0.885 41 H 0.116 0.884 42 H 0.081 0.919 43 H 0.095 0.905 44 H 0.122 0.878 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -16.188 -13.578 20.132 29.185 hybrid contribution -0.974 0.578 -0.834 1.407 sum -17.163 -13.000 19.298 28.914 Atomic orbital electron populations 1.20402 0.87715 1.03409 1.03038 1.20598 0.93838 0.85836 1.07164 1.20658 0.92448 0.97909 1.11791 1.21385 0.98090 0.91891 1.04528 1.19914 0.84244 0.93499 1.19608 1.16961 0.82269 0.86701 0.75801 1.90778 1.86206 1.14851 1.51099 1.45757 1.04697 1.12505 1.73861 1.21260 0.83672 0.93018 0.98932 0.88561 1.22109 1.02661 1.01288 0.95887 1.21641 0.96492 0.96128 0.86916 1.45965 1.17738 1.49314 1.26297 1.20288 0.84191 0.78317 0.85442 1.90707 1.21950 1.62106 1.64500 1.23281 1.05119 1.02409 0.96711 1.84772 1.18029 1.57018 1.31661 1.22315 1.03999 1.32816 1.07750 0.89381 1.24718 0.98602 0.94182 0.93834 1.69937 1.37484 1.30296 1.13980 0.86732 0.84433 0.78607 0.82056 1.19221 1.19947 1.15911 1.43724 1.04578 1.06564 1.53227 1.22258 1.01847 0.79815 1.03767 0.90575 0.91676 0.89762 0.83886 0.83692 0.75841 0.91481 0.90997 0.91937 0.90726 0.89757 0.76497 0.88517 0.88400 0.91934 0.90548 0.87775 0.90190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.45 10.08 36.01 0.36 -0.09 16 2 C 0.04 0.37 6.87 -81.95 -0.56 -0.20 16 3 C -0.20 -1.85 10.71 -39.98 -0.43 -2.28 16 4 C -0.13 -1.25 10.35 -39.12 -0.40 -1.66 16 5 C -0.06 -0.62 6.88 -81.98 -0.56 -1.19 16 6 C 0.59 6.34 7.73 -12.85 -0.10 6.24 16 7 O -0.55 -7.13 14.32 5.19 0.07 -7.05 16 8 N -0.72 -6.05 4.49 -55.12 -0.25 -6.30 16 9 C 0.14 1.14 2.70 -67.93 -0.18 0.95 16 10 H 0.10 0.92 7.65 -51.93 -0.40 0.52 16 11 C -0.16 -1.19 9.48 37.16 0.35 -0.84 16 12 C 0.11 1.11 5.23 -4.04 -0.02 1.09 16 13 N -0.74 -8.81 5.39 -60.29 -0.32 -9.13 16 14 C 0.53 9.05 7.85 -10.99 -0.09 8.97 16 15 O -0.52 -10.76 15.86 5.56 0.09 -10.67 16 16 C -0.12 -2.37 6.16 36.01 0.22 -2.15 16 17 S -0.14 -3.54 18.55 -107.50 -1.99 -5.54 16 18 C -0.52 -14.97 10.04 30.94 0.31 -14.66 16 19 H 0.09 2.64 8.03 -52.49 -0.42 2.22 16 20 C 0.10 2.78 5.50 -17.43 -0.10 2.69 16 21 N -0.88 -26.57 13.97 55.49 0.78 -25.80 16 22 Si 0.86 21.72 27.74 -169.99 -4.72 17.01 16 23 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 24 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 25 H -0.24 -5.93 6.74 56.52 0.38 -5.55 16 26 N -0.41 -3.89 3.16 -115.62 -0.37 -4.25 16 27 C 0.06 0.47 10.38 59.85 0.62 1.09 16 28 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.06 0.26 7.08 -51.93 -0.37 -0.10 16 30 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 31 H 0.14 1.05 8.06 -52.49 -0.42 0.63 16 32 H 0.15 1.10 7.49 -52.49 -0.39 0.71 16 33 H 0.41 2.94 7.56 -40.82 -0.31 2.63 16 34 H 0.07 0.58 8.09 -51.93 -0.42 0.16 16 35 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.07 0.74 8.14 -51.92 -0.42 0.32 16 38 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 39 H 0.40 4.12 8.14 -40.82 -0.33 3.79 16 40 H 0.10 1.74 8.14 -51.91 -0.42 1.32 16 41 H 0.10 1.72 8.14 -51.92 -0.42 1.30 16 42 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 43 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 44 H 0.10 0.91 6.21 -51.93 -0.32 0.59 16 45 H 0.08 0.38 7.11 -51.93 -0.37 0.01 16 LS Contribution 391.40 15.07 5.90 5.90 Total: -1.00 -36.12 391.40 -8.10 -44.23 By element: Atomic # 1 Polarization: 10.34 SS G_CDS: -6.72 Total: 3.62 kcal Atomic # 6 Polarization: -1.44 SS G_CDS: -0.58 Total: -2.02 kcal Atomic # 7 Polarization: -45.32 SS G_CDS: -0.16 Total: -45.48 kcal Atomic # 8 Polarization: -17.88 SS G_CDS: 0.16 Total: -17.72 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -4.72 Total: 17.01 kcal Atomic # 16 Polarization: -3.54 SS G_CDS: -1.99 Total: -5.54 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -36.12 -8.10 -44.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001298533217.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.246 kcal (2) G-P(sol) polarization free energy of solvation -36.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds