Wall clock time and date at job start Sat Apr 11 2020 05:38:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31407 * 1 3 3 Si 1.86799 * 120.00244 * 2 1 4 4 H 1.48502 * 109.47381 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46797 * 299.99506 * 3 2 1 6 6 H 1.48498 * 109.47300 * 59.99499 * 3 2 1 7 7 C 1.38951 * 120.00072 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00431 * 180.02562 * 7 2 1 9 9 N 1.37099 * 119.99691 * 0.02562 * 7 2 1 10 10 C 1.34782 * 120.00094 * 180.02562 * 9 7 2 11 11 O 1.21297 * 119.99593 * 359.97438 * 10 9 7 12 12 C 1.50692 * 120.00033 * 180.02562 * 10 9 7 13 13 N 1.46503 * 109.46880 * 179.97438 * 12 10 9 14 14 C 1.34784 * 119.99800 * 179.97438 * 13 12 10 15 15 O 1.21587 * 120.00076 * 0.02562 * 14 13 12 16 16 N 1.34772 * 119.99782 * 179.97438 * 14 13 12 17 17 C 1.46499 * 120.00196 * 179.97438 * 16 14 13 18 18 C 1.52998 * 109.47439 * 180.02562 * 17 16 14 19 19 H 1.09002 * 109.46565 * 304.99337 * 18 17 16 20 20 O 1.42893 * 109.47299 * 64.99723 * 18 17 16 21 21 C 1.53003 * 109.47055 * 185.00237 * 18 17 16 22 22 C 1.50700 * 109.46947 * 174.99976 * 21 18 17 23 23 C 1.38262 * 119.98980 * 89.99854 * 22 21 18 24 24 C 1.38227 * 120.05195 * 180.02562 * 23 22 21 25 25 C 1.38219 * 120.02402 * 0.25898 * 24 23 22 26 26 C 1.38439 * 119.97325 * 359.41717 * 25 24 23 27 27 F 1.35105 * 120.02463 * 180.29881 * 26 25 24 28 28 C 1.38177 * 119.98534 * 269.97318 * 22 21 18 29 29 H 0.97001 * 120.00074 * 0.02562 * 1 2 3 30 30 H 0.97003 * 120.00085 * 0.02562 * 9 7 2 31 31 H 1.08996 * 109.47570 * 59.99917 * 12 10 9 32 32 H 1.09008 * 109.47257 * 299.99306 * 12 10 9 33 33 H 0.96994 * 120.00101 * 359.97438 * 13 12 10 34 34 H 0.97003 * 120.00748 * 0.02562 * 16 14 13 35 35 H 1.08998 * 109.46921 * 59.99665 * 17 16 14 36 36 H 1.09005 * 109.47124 * 300.00161 * 17 16 14 37 37 H 0.96701 * 114.00350 * 60.00493 * 20 18 17 38 38 H 1.08997 * 109.47540 * 54.99239 * 21 18 17 39 39 H 1.09003 * 109.46699 * 294.99634 * 21 18 17 40 40 H 1.07999 * 119.97792 * 359.97438 * 23 22 21 41 41 H 1.08002 * 119.98464 * 179.97438 * 24 23 22 42 42 H 1.08004 * 120.01020 * 179.72204 * 25 24 23 43 43 H 1.08000 * 120.01276 * 359.97438 * 28 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7082 1.3463 0.0006 5 1 1.8895 2.3963 -1.2126 6 1 1.8894 2.3965 1.2124 7 6 2.0088 -1.2033 0.0005 8 1 3.0888 -1.2034 0.0010 9 7 1.3233 -2.3906 0.0005 10 6 1.9971 -3.5579 0.0016 11 8 3.2101 -3.5579 0.0021 12 6 1.2436 -4.8629 0.0010 13 7 2.1956 -5.9764 0.0017 14 6 1.7463 -7.2472 0.0019 15 8 0.5509 -7.4693 0.0010 16 7 2.6221 -8.2716 0.0021 17 6 2.1338 -9.6528 0.0028 18 6 3.3237 -10.6145 0.0035 19 1 3.9768 -10.3849 -0.8385 20 8 4.0520 -10.4703 1.2244 21 6 2.8171 -12.0528 -0.1215 22 6 3.9909 -12.9899 -0.2444 23 6 4.5621 -13.5347 0.8908 24 6 5.6391 -14.3939 0.7796 25 6 6.1497 -14.7052 -0.4665 26 6 5.5744 -14.1656 -1.6042 27 9 6.0689 -14.4739 -2.8231 28 6 4.4957 -13.3047 -1.4915 29 1 -0.4850 0.8400 -0.0004 30 1 0.3533 -2.3906 -0.0002 31 1 0.6180 -4.9209 -0.8896 32 1 0.6160 -4.9205 0.8904 33 1 3.1492 -5.7992 0.0021 34 1 3.5758 -8.0944 0.0024 35 1 1.5279 -9.8244 -0.8869 36 1 1.5285 -9.8237 0.8931 37 1 3.5319 -10.6595 2.0174 38 1 2.1877 -12.1407 -1.0070 39 1 2.2366 -12.3117 0.7640 40 1 4.1670 -13.2881 1.8652 41 1 6.0847 -14.8186 1.6671 42 1 6.9941 -15.3731 -0.5528 43 1 4.0489 -12.8796 -2.3782 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001312661757.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:59 Heat of formation + Delta-G solvation = -172.861996 kcal Electronic energy + Delta-G solvation = -27348.871692 eV Core-core repulsion = 22921.005743 eV Total energy + Delta-G solvation = -4427.865949 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.143 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -49.89225 -41.23569 -40.36968 -39.96844 -38.47020 -36.24097 -35.27803 -35.24333 -33.83016 -33.35987 -31.45498 -30.75498 -29.11001 -27.06290 -26.01433 -23.69404 -23.19627 -22.35430 -21.78338 -21.35248 -20.10402 -19.55720 -18.52279 -17.72861 -17.43618 -17.39914 -17.06854 -17.02612 -16.76888 -16.56704 -16.49746 -16.40067 -15.85833 -15.57210 -15.44172 -15.11988 -14.83948 -14.66206 -14.32705 -14.07041 -13.92938 -13.81332 -13.54255 -13.30100 -13.07766 -12.90137 -12.77839 -12.44208 -12.43797 -12.10898 -12.07214 -11.84545 -11.57221 -11.47446 -11.11173 -10.54729 -10.41821 -10.09251 -9.85849 -9.79417 -9.57158 -8.50426 -6.00498 0.22926 0.28233 1.35784 1.43344 1.56127 1.64178 1.90695 2.13547 2.29362 2.64960 3.05395 3.16898 3.23937 3.34702 3.53472 3.59799 3.85463 3.96025 4.09733 4.14704 4.22229 4.26874 4.34144 4.42556 4.44979 4.47909 4.59833 4.74892 4.82797 5.01780 5.11105 5.17163 5.21570 5.32517 5.39785 5.42067 5.49318 5.59415 5.92033 5.96464 5.99574 6.49130 6.85882 7.03755 7.04551 7.43800 7.54862 7.95728 8.66681 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.026396 B = 0.001511 C = 0.001482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.525663 B =18529.950276 C =18884.566437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.010 4.010 3 Si 0.997 3.003 4 H -0.271 1.271 5 H -0.271 1.271 6 H -0.271 1.271 7 C -0.337 4.337 8 H 0.086 0.914 9 N -0.559 5.559 10 C 0.433 3.567 11 O -0.625 6.625 12 C 0.142 3.858 13 N -0.726 5.726 14 C 0.704 3.296 15 O -0.633 6.633 16 N -0.729 5.729 17 C 0.107 3.893 18 C 0.116 3.884 19 H 0.100 0.900 20 O -0.564 6.564 21 C -0.106 4.106 22 C -0.051 4.051 23 C -0.116 4.116 24 C -0.093 4.093 25 C -0.168 4.168 26 C 0.069 3.931 27 F -0.155 7.155 28 C -0.164 4.164 29 H 0.280 0.720 30 H 0.399 0.601 31 H 0.091 0.909 32 H 0.092 0.908 33 H 0.409 0.591 34 H 0.409 0.591 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.390 0.610 38 H 0.098 0.902 39 H 0.106 0.894 40 H 0.151 0.849 41 H 0.155 0.845 42 H 0.143 0.857 43 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.438 -30.005 2.160 30.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.211 4.211 3 Si 0.821 3.179 4 H -0.195 1.195 5 H -0.197 1.197 6 H -0.196 1.196 7 C -0.467 4.467 8 H 0.104 0.896 9 N -0.195 5.195 10 C 0.220 3.780 11 O -0.513 6.513 12 C 0.014 3.986 13 N -0.383 5.383 14 C 0.403 3.597 15 O -0.514 6.514 16 N -0.385 5.385 17 C -0.017 4.017 18 C 0.056 3.944 19 H 0.118 0.882 20 O -0.372 6.372 21 C -0.144 4.144 22 C -0.051 4.051 23 C -0.134 4.134 24 C -0.111 4.111 25 C -0.186 4.186 26 C 0.050 3.950 27 F -0.134 7.134 28 C -0.183 4.183 29 H 0.089 0.911 30 H 0.233 0.767 31 H 0.109 0.891 32 H 0.110 0.890 33 H 0.247 0.753 34 H 0.245 0.755 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.239 0.761 38 H 0.117 0.883 39 H 0.124 0.876 40 H 0.169 0.831 41 H 0.173 0.827 42 H 0.161 0.839 43 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 6.497 -29.896 1.705 30.641 hybrid contribution 0.276 0.889 -0.206 0.953 sum 6.773 -29.007 1.499 29.825 Atomic orbital electron populations 1.69683 1.06979 1.29552 1.49346 1.26117 0.96535 1.02640 0.95803 0.84809 0.78094 0.76753 0.78291 1.19509 1.19661 1.19631 1.19778 0.92964 0.83575 1.50342 0.89611 1.41837 1.09595 1.04573 1.63477 1.20451 0.88119 0.85955 0.83455 1.90473 1.15232 1.87573 1.57996 1.20574 0.90976 0.83033 1.04043 1.44713 1.10973 1.03405 1.79248 1.15959 0.85146 0.80797 0.77781 1.90881 1.15594 1.84735 1.60238 1.44868 1.09285 1.04824 1.79556 1.22066 0.97207 0.79110 1.03308 1.21976 0.91853 0.91924 0.88605 0.88164 1.86627 1.42125 1.92391 1.16052 1.21268 0.95118 0.91867 1.06146 1.19681 0.96906 0.96578 0.91939 1.21440 0.96210 0.96458 0.99248 1.21354 0.95753 0.96830 0.97128 1.21408 1.02367 1.02921 0.91940 1.18032 0.96561 1.00178 0.80202 1.91466 1.87198 1.92017 1.42737 1.21235 0.97275 1.00007 0.99755 0.91080 0.76672 0.89061 0.88996 0.75321 0.75477 0.90842 0.90836 0.76057 0.88344 0.87573 0.83140 0.82690 0.83935 0.84306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.48 13.05 21.66 0.28 -48.20 16 2 C -0.01 -0.54 5.50 84.93 0.47 -0.07 16 3 Si 1.00 41.71 29.55 68.60 2.03 43.74 16 4 H -0.27 -11.36 7.11 99.48 0.71 -10.66 16 5 H -0.27 -10.91 7.11 99.48 0.71 -10.21 16 6 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 7 C -0.34 -18.58 9.68 84.04 0.81 -17.77 16 8 H 0.09 4.98 7.16 -2.91 -0.02 4.96 16 9 N -0.56 -28.04 5.29 -306.98 -1.62 -29.66 16 10 C 0.43 19.97 7.85 87.65 0.69 20.66 16 11 O -0.62 -32.29 15.24 -3.08 -0.05 -32.33 16 12 C 0.14 5.21 6.15 85.63 0.53 5.73 16 13 N -0.73 -23.73 5.53 -482.29 -2.67 -26.40 16 14 C 0.70 21.52 8.57 179.05 1.53 23.05 16 15 O -0.63 -23.46 16.34 -3.99 -0.07 -23.52 16 16 N -0.73 -15.42 5.51 -478.54 -2.64 -18.06 16 17 C 0.11 1.62 5.31 86.38 0.46 2.08 16 18 C 0.12 1.18 2.99 30.59 0.09 1.27 16 19 H 0.10 1.20 8.14 -2.39 -0.02 1.19 16 20 O -0.56 -6.29 12.78 -148.98 -1.90 -8.20 16 21 C -0.11 -0.73 5.03 29.85 0.15 -0.58 16 22 C -0.05 -0.54 4.97 -19.87 -0.10 -0.64 16 23 C -0.12 -1.06 9.40 22.27 0.21 -0.85 16 24 C -0.09 -0.90 10.04 22.26 0.22 -0.67 16 25 C -0.17 -2.18 10.03 22.31 0.22 -1.96 16 26 C 0.07 1.14 7.30 22.38 0.16 1.31 16 27 F -0.16 -3.06 17.27 44.97 0.78 -2.28 16 28 C -0.16 -2.29 9.68 22.31 0.22 -2.08 16 29 H 0.28 13.81 8.31 -92.71 -0.77 13.04 16 30 H 0.40 19.20 7.90 -92.71 -0.73 18.47 16 31 H 0.09 3.20 8.14 -2.39 -0.02 3.18 16 32 H 0.09 3.21 8.14 -2.38 -0.02 3.19 16 33 H 0.41 13.19 7.45 -92.71 -0.69 12.50 16 34 H 0.41 7.50 8.49 -92.71 -0.79 6.71 16 35 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.07 1.10 8.14 -2.38 -0.02 1.08 16 37 H 0.39 1.85 9.05 -74.06 -0.67 1.18 16 38 H 0.10 0.57 8.08 -2.39 -0.02 0.55 16 39 H 0.11 0.35 8.09 -2.39 -0.02 0.33 16 40 H 0.15 0.67 8.06 -2.91 -0.02 0.64 16 41 H 0.16 0.70 8.06 -2.91 -0.02 0.67 16 42 H 0.14 1.43 8.06 -2.91 -0.02 1.41 16 43 H 0.14 1.67 8.06 -2.91 -0.02 1.65 16 Total: -1.00 -72.60 381.84 -1.97 -74.57 By element: Atomic # 1 Polarization: 42.65 SS G_CDS: -1.78 Total: 40.87 kcal Atomic # 6 Polarization: 23.81 SS G_CDS: 5.67 Total: 29.48 kcal Atomic # 7 Polarization: -115.68 SS G_CDS: -6.64 Total: -122.32 kcal Atomic # 8 Polarization: -62.04 SS G_CDS: -2.02 Total: -64.05 kcal Atomic # 9 Polarization: -3.06 SS G_CDS: 0.78 Total: -2.28 kcal Atomic # 14 Polarization: 41.71 SS G_CDS: 2.03 Total: 43.74 kcal Total: -72.60 -1.97 -74.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001312661757.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.294 kcal (2) G-P(sol) polarization free energy of solvation -72.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds