Wall clock time and date at job start Sat Apr 11 2020 05:39:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 S 1.75887 * 125.20499 * 2 1 4 4 C 1.75888 * 90.97242 * 180.02562 * 3 2 1 5 5 C 1.33401 * 109.58967 * 359.73075 * 4 3 2 6 6 C 1.33389 * 125.20274 * 180.02562 * 2 1 3 7 7 C 1.50703 * 122.54093 * 359.97438 * 6 2 1 8 8 C 1.50700 * 109.47148 * 84.99701 * 7 6 2 9 9 O 1.21283 * 119.99803 * 0.02562 * 8 7 6 10 10 N 1.34777 * 119.99675 * 180.28037 * 8 7 6 11 11 C 1.46497 * 119.99525 * 179.72583 * 10 8 7 12 12 C 1.52999 * 109.46992 * 179.97438 * 11 10 8 13 13 H 1.08994 * 109.47462 * 64.99994 * 12 11 10 14 14 C 1.53001 * 109.47200 * 184.99961 * 12 11 10 15 15 N 1.46902 * 109.47043 * 304.99995 * 12 11 10 16 16 C 1.46906 * 111.00123 * 155.00160 * 15 12 11 17 17 C 1.50696 * 109.47341 * 180.02562 * 16 15 12 18 18 O 1.21295 * 119.99671 * 359.97438 * 17 16 15 19 19 N 1.34774 * 120.00090 * 180.02562 * 17 16 15 20 20 C 1.37097 * 119.99952 * 179.97438 * 19 17 16 21 21 H 1.07995 * 120.00052 * 359.97438 * 20 19 17 22 22 C 1.38949 * 119.99868 * 180.02562 * 20 19 17 23 23 N 1.31412 * 120.00221 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 119.99984 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.46960 * 359.97438 * 24 22 20 26 26 H 1.48504 * 109.47243 * 119.99677 * 24 22 20 27 27 H 1.48496 * 109.46937 * 239.99430 * 24 22 20 28 28 H 1.08997 * 109.46650 * 269.97923 * 1 2 3 29 29 H 1.08996 * 109.46749 * 29.97558 * 1 2 3 30 30 H 1.08998 * 109.47160 * 149.97460 * 1 2 3 31 31 H 1.07993 * 125.20534 * 180.02562 * 4 3 2 32 32 H 1.07994 * 122.53626 * 180.23785 * 5 4 3 33 33 H 1.09009 * 109.46601 * 324.99723 * 7 6 2 34 34 H 1.08998 * 109.47035 * 205.00231 * 7 6 2 35 35 H 0.97000 * 119.99894 * 359.71837 * 10 8 7 36 36 H 1.08995 * 109.47421 * 299.99467 * 11 10 8 37 37 H 1.09001 * 109.47621 * 60.00103 * 11 10 8 38 38 H 1.09003 * 109.47254 * 60.00178 * 14 12 11 39 39 H 1.09001 * 109.46990 * 179.97438 * 14 12 11 40 40 H 1.08994 * 109.47308 * 299.99966 * 14 12 11 41 41 H 1.00906 * 111.00106 * 278.95350 * 15 12 11 42 42 H 1.09002 * 109.46553 * 300.00180 * 16 15 12 43 43 H 1.08997 * 109.47248 * 59.99851 * 16 15 12 44 44 H 0.96993 * 119.99825 * 359.97438 * 19 17 16 45 45 H 0.96997 * 120.00376 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.5210 1.4372 0.0000 4 6 3.9752 0.4477 -0.0008 5 6 3.6380 -0.8430 0.0049 6 6 2.2760 -1.0899 -0.0005 7 6 1.7052 -2.4847 -0.0005 8 6 1.3997 -2.9024 -1.4159 9 8 1.6239 -2.1425 -2.3342 10 7 0.8726 -4.1185 -1.6607 11 6 0.5701 -4.5222 -3.0361 12 6 -0.0141 -5.9363 -3.0357 13 1 -0.9735 -5.9329 -2.5185 14 6 -0.2138 -6.4059 -4.4781 15 7 0.9100 -6.8476 -2.3475 16 6 0.1953 -8.0100 -1.8034 17 6 1.1734 -8.9198 -1.1058 18 8 2.3503 -8.6287 -1.0663 19 7 0.7408 -10.0573 -0.5269 20 6 1.6307 -10.8852 0.1073 21 1 2.6785 -10.6260 0.1425 22 6 1.1847 -12.0582 0.7037 23 7 -0.0902 -12.3739 0.6604 24 14 2.3972 -13.1860 1.5684 25 1 3.7621 -12.6082 1.4772 26 1 2.0124 -13.3251 2.9960 27 1 2.3809 -14.5213 0.9190 28 1 -0.3632 -0.0004 1.0277 29 1 -0.3633 0.8902 -0.5134 30 1 -0.3633 -0.8897 -0.5142 31 1 4.9863 0.8270 -0.0007 32 1 4.3720 -1.6351 0.0094 33 1 0.7886 -2.5022 0.5893 34 1 2.4297 -3.1738 0.4334 35 1 0.6937 -4.7263 -0.9263 36 1 -0.1532 -3.8301 -3.4672 37 1 1.4849 -4.5076 -3.6287 38 1 0.7456 -6.4094 -4.9953 39 1 -0.6296 -7.4135 -4.4777 40 1 -0.8994 -5.7298 -4.9887 41 1 1.6567 -7.1371 -2.9614 42 1 -0.5580 -7.6727 -1.0914 43 1 -0.2893 -8.5515 -2.6158 44 1 -0.2002 -10.2902 -0.5589 45 1 -0.4016 -13.1926 1.0771 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317271053.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:23 Heat of formation + Delta-G solvation = -49.951499 kcal Electronic energy + Delta-G solvation = -26197.688273 eV Core-core repulsion = 22341.365299 eV Total energy + Delta-G solvation = -3856.322974 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.99948 -38.58870 -38.00857 -36.81800 -34.13382 -33.72130 -32.38985 -31.37284 -30.95101 -30.05369 -26.71883 -26.31636 -25.26370 -23.94724 -22.78368 -21.03255 -20.44395 -19.35322 -18.50698 -17.95382 -17.30634 -17.01822 -16.40130 -15.92448 -15.75417 -15.13940 -15.09342 -14.63074 -14.58256 -14.21732 -13.95305 -13.62087 -13.57334 -13.26510 -13.09328 -12.93484 -12.84243 -12.57478 -12.39088 -12.22594 -12.18728 -11.90128 -11.69491 -11.62091 -11.61567 -11.42785 -11.10099 -11.01050 -10.85819 -10.37887 -10.26787 -9.83873 -9.56526 -8.93781 -8.65661 -8.55071 -8.47356 -8.15611 -8.00971 -6.46385 -3.87275 0.88877 1.50860 1.85757 2.52224 2.73047 3.13022 3.24158 3.31129 3.39851 3.85203 4.02474 4.26356 4.62660 4.72117 4.76387 4.86415 4.94785 5.05821 5.08900 5.17503 5.23045 5.23437 5.24413 5.31772 5.44885 5.47580 5.49373 5.60981 5.67008 5.73534 5.75027 5.85519 5.94853 5.96827 6.01974 6.21182 6.25476 6.40467 6.53426 7.10224 7.51136 7.54708 7.65238 8.01690 8.33555 8.56026 9.13446 9.49314 10.00352 10.71283 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.014296 B = 0.002045 C = 0.001876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1958.131051 B =13689.423295 C =14917.887560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.162 4.162 3 S 0.083 5.917 4 C -0.217 4.217 5 C -0.115 4.115 6 C -0.087 4.087 7 C -0.084 4.084 8 C 0.513 3.487 9 O -0.542 6.542 10 N -0.713 5.713 11 C 0.135 3.865 12 C 0.068 3.932 13 H 0.084 0.916 14 C -0.181 4.181 15 N -0.663 5.663 16 C 0.050 3.950 17 C 0.439 3.561 18 O -0.583 6.583 19 N -0.563 5.563 20 C -0.299 4.299 21 H 0.103 0.897 22 C 0.022 3.978 23 N -0.901 5.901 24 Si 0.929 3.071 25 H -0.268 1.268 26 H -0.281 1.281 27 H -0.282 1.282 28 H 0.074 0.926 29 H 0.068 0.932 30 H 0.074 0.926 31 H 0.162 0.838 32 H 0.140 0.860 33 H 0.101 0.899 34 H 0.106 0.894 35 H 0.410 0.590 36 H 0.066 0.934 37 H 0.065 0.935 38 H 0.061 0.939 39 H 0.062 0.938 40 H 0.062 0.938 41 H 0.353 0.647 42 H 0.085 0.915 43 H 0.045 0.955 44 H 0.392 0.608 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.848 21.854 -2.877 22.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.279 4.279 3 S 0.347 5.653 4 C -0.352 4.352 5 C -0.145 4.145 6 C -0.099 4.099 7 C -0.126 4.126 8 C 0.299 3.701 9 O -0.420 6.420 10 N -0.365 5.365 11 C 0.011 3.989 12 C -0.043 4.043 13 H 0.102 0.898 14 C -0.241 4.241 15 N -0.296 5.296 16 C -0.083 4.083 17 C 0.225 3.775 18 O -0.467 6.467 19 N -0.200 5.200 20 C -0.428 4.428 21 H 0.121 0.879 22 C -0.180 4.180 23 N -0.543 5.543 24 Si 0.756 3.244 25 H -0.192 1.192 26 H -0.207 1.207 27 H -0.208 1.208 28 H 0.093 0.907 29 H 0.087 0.913 30 H 0.093 0.907 31 H 0.180 0.820 32 H 0.157 0.843 33 H 0.119 0.881 34 H 0.124 0.876 35 H 0.245 0.755 36 H 0.084 0.916 37 H 0.083 0.917 38 H 0.080 0.920 39 H 0.081 0.919 40 H 0.081 0.919 41 H 0.173 0.827 42 H 0.104 0.896 43 H 0.063 0.937 44 H 0.225 0.775 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -2.252 24.347 -2.840 24.615 hybrid contribution 0.057 -3.222 -0.111 3.224 sum -2.195 21.125 -2.951 21.442 Atomic orbital electron populations 1.20322 0.88023 1.03280 1.02393 1.24195 0.99737 0.95151 1.08848 1.84091 0.97324 1.09796 1.74048 1.25418 1.01553 0.96595 1.11650 1.20029 0.95591 0.96610 1.02312 1.18208 0.92855 0.94214 1.04631 1.20367 1.03177 0.93957 0.95128 1.20467 0.77127 0.81515 0.91029 1.90699 1.52502 1.52500 1.46250 1.45817 1.64332 1.16518 1.09877 1.21289 1.00274 0.93825 0.83556 1.21854 0.96423 0.92351 0.93655 0.89817 1.22437 1.02611 1.01954 0.97051 1.60187 1.11688 1.17108 1.40624 1.21720 0.96385 0.91533 0.98669 1.19805 0.89282 0.83494 0.84956 1.90537 1.17664 1.74618 1.63869 1.41875 1.10908 1.18710 1.48505 1.19744 0.92598 1.00477 1.30016 0.87870 1.25267 0.96667 0.98005 0.98025 1.69614 1.13670 1.25844 1.45137 0.85806 0.80363 0.79508 0.78714 1.19207 1.20710 1.20771 0.90708 0.91317 0.90681 0.82003 0.84272 0.88102 0.87595 0.75460 0.91562 0.91696 0.91997 0.91945 0.91874 0.82660 0.89639 0.93723 0.77489 0.91897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.70 9.78 36.01 0.35 -0.35 16 2 C -0.16 -1.75 6.51 -36.00 -0.23 -1.98 16 3 S 0.08 0.83 23.33 -107.50 -2.51 -1.68 16 4 C -0.22 -2.19 11.23 29.04 0.33 -1.86 16 5 C -0.12 -1.28 9.96 -41.20 -0.41 -1.69 16 6 C -0.09 -0.99 4.29 -106.25 -0.46 -1.45 16 7 C -0.08 -0.86 5.34 -29.03 -0.16 -1.01 16 8 C 0.51 6.52 7.57 -10.98 -0.08 6.44 16 9 O -0.54 -8.84 16.03 5.55 0.09 -8.75 16 10 N -0.71 -8.22 5.39 -60.30 -0.32 -8.54 16 11 C 0.14 1.52 5.37 -4.04 -0.02 1.49 16 12 C 0.07 0.72 2.75 -67.71 -0.19 0.53 16 13 H 0.08 0.82 7.80 -51.93 -0.40 0.41 16 14 C -0.18 -1.70 9.16 37.16 0.34 -1.36 16 15 N -0.66 -9.31 5.32 -107.99 -0.57 -9.88 16 16 C 0.05 0.78 5.97 -4.97 -0.03 0.75 16 17 C 0.44 9.76 7.82 -10.99 -0.09 9.67 16 18 O -0.58 -15.10 15.78 5.54 0.09 -15.01 16 19 N -0.56 -13.68 5.29 -10.97 -0.06 -13.74 16 20 C -0.30 -8.11 9.68 -14.93 -0.14 -8.25 16 21 H 0.10 2.96 7.16 -52.49 -0.38 2.58 16 22 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 23 N -0.90 -23.96 13.05 55.50 0.72 -23.23 16 24 Si 0.93 20.64 29.55 -169.99 -5.02 15.61 16 25 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 26 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 27 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 28 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.07 0.67 7.19 -51.93 -0.37 0.30 16 31 H 0.16 1.25 8.06 -52.49 -0.42 0.83 16 32 H 0.14 1.39 8.06 -52.49 -0.42 0.96 16 33 H 0.10 0.81 7.51 -51.92 -0.39 0.42 16 34 H 0.11 0.98 8.11 -51.93 -0.42 0.56 16 35 H 0.41 4.48 8.14 -40.82 -0.33 4.15 16 36 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 37 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.06 0.59 8.13 -51.93 -0.42 0.17 16 39 H 0.06 0.61 7.45 -51.93 -0.39 0.22 16 40 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.35 5.44 8.17 -39.29 -0.32 5.11 16 42 H 0.09 1.21 8.06 -51.93 -0.42 0.79 16 43 H 0.04 0.64 7.44 -51.93 -0.39 0.26 16 44 H 0.39 9.09 7.90 -40.82 -0.32 8.77 16 45 H 0.27 6.81 8.31 -40.82 -0.34 6.48 16 LS Contribution 394.16 15.07 5.94 5.94 Total: -1.00 -32.80 394.16 -9.18 -41.98 By element: Atomic # 1 Polarization: 22.55 SS G_CDS: -6.65 Total: 15.90 kcal Atomic # 6 Polarization: 2.29 SS G_CDS: -0.88 Total: 1.41 kcal Atomic # 7 Polarization: -55.17 SS G_CDS: -0.23 Total: -55.40 kcal Atomic # 8 Polarization: -23.93 SS G_CDS: 0.18 Total: -23.75 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.61 kcal Atomic # 16 Polarization: 0.83 SS G_CDS: -2.51 Total: -1.68 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -32.80 -9.18 -41.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317271053.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.974 kcal (2) G-P(sol) polarization free energy of solvation -32.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds