Wall clock time and date at job start Sat Apr 11 2020 05:39:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 119.99663 * 2 1 4 4 H 1.48503 * 109.47195 * 269.99383 * 3 2 1 5 5 H 1.48498 * 109.47355 * 29.99940 * 3 2 1 6 6 H 1.48504 * 109.46850 * 149.99954 * 3 2 1 7 7 C 1.38806 * 120.00191 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00161 * 163.08302 * 7 2 1 9 9 N 1.36942 * 120.00203 * 343.08250 * 7 2 1 10 10 C 1.46922 * 120.62796 * 331.83144 * 9 7 2 11 11 C 1.53192 * 108.89269 * 233.51528 * 10 9 7 12 12 C 1.53065 * 109.29648 * 305.57538 * 11 10 9 13 13 N 1.46902 * 109.45679 * 181.24135 * 12 11 10 14 14 C 1.46901 * 110.99593 * 84.79045 * 13 12 11 15 15 C 1.50702 * 109.46914 * 180.02562 * 14 13 12 16 16 C 1.33638 * 126.03758 * 89.71747 * 15 14 13 17 17 N 1.31787 * 114.49880 * 179.78682 * 16 15 14 18 18 C 1.29034 * 117.12242 * 0.52329 * 17 16 15 19 19 C 1.50699 * 124.91316 * 179.67927 * 18 17 16 20 20 O 1.43752 * 109.63075 * 149.40681 * 19 18 17 21 21 C 1.44790 * 104.81275 * 215.80379 * 20 19 18 22 22 C 1.54917 * 101.72093 * 36.10142 * 21 20 19 23 23 O 1.43365 * 109.63621 * 30.03794 * 19 18 17 24 24 S 1.70978 * 110.16811 * 359.71417 * 18 17 16 25 25 C 1.53049 * 109.65631 * 61.15762 * 12 11 10 26 26 C 1.46924 * 120.63278 * 151.81256 * 9 7 2 27 27 H 0.96995 * 120.00379 * 0.02562 * 1 2 3 28 28 H 1.09003 * 109.58836 * 353.37398 * 10 9 7 29 29 H 1.08998 * 109.58900 * 113.65916 * 10 9 7 30 30 H 1.09005 * 109.49756 * 65.39178 * 11 10 9 31 31 H 1.09004 * 109.49788 * 185.48181 * 11 10 9 32 32 H 1.08992 * 109.34132 * 301.13957 * 12 11 10 33 33 H 1.00906 * 110.99831 * 320.84042 * 13 12 11 34 34 H 1.08993 * 109.47187 * 300.00363 * 14 13 12 35 35 H 1.09000 * 109.47027 * 60.00800 * 14 13 12 36 36 H 1.08000 * 122.75138 * 359.97438 * 16 15 14 37 37 H 1.09006 * 109.62466 * 269.64451 * 19 18 17 38 38 H 1.08999 * 110.97719 * 277.99381 * 21 20 19 39 39 H 1.09003 * 111.00623 * 154.21959 * 21 20 19 40 40 H 1.08996 * 110.69609 * 206.03872 * 22 21 20 41 41 H 1.09006 * 110.84493 * 82.90412 * 22 21 20 42 42 H 1.09002 * 109.49883 * 178.75013 * 25 12 11 43 43 H 1.08993 * 109.49715 * 58.64866 * 25 12 11 44 44 H 1.09007 * 109.58325 * 246.20224 * 26 9 7 45 45 H 1.08996 * 109.58499 * 6.48109 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0553 -1.2224 -0.2716 9 7 1.3701 -2.3623 0.3462 10 6 0.2263 -2.3400 1.2679 11 6 0.4941 -3.3198 2.4146 12 6 0.8120 -4.7008 1.8361 13 7 1.0404 -5.6503 2.9335 14 6 -0.2286 -6.2096 3.4182 15 6 0.0450 -7.1765 4.5413 16 6 0.1104 -6.8734 5.8412 17 7 0.3594 -7.8996 6.6298 18 6 0.5180 -9.0495 6.0664 19 6 0.8153 -10.3340 6.7963 20 8 0.2492 -11.4413 6.0754 21 6 -0.1954 -12.3621 7.1006 22 6 -0.6914 -11.3916 8.2015 23 8 0.2335 -10.2896 8.1059 24 16 0.3429 -8.9049 4.3717 25 6 2.0675 -4.6174 0.9647 26 6 1.8138 -3.6528 -0.1981 27 1 -0.4850 0.8400 -0.0004 28 1 0.0994 -1.3343 1.6687 29 1 -0.6774 -2.6381 0.7363 30 1 1.3429 -2.9692 3.0020 31 1 -0.3880 -3.3841 3.0518 32 1 -0.0282 -5.0407 1.2308 33 1 1.5551 -5.2169 3.6854 34 1 -0.8662 -5.4034 3.7805 35 1 -0.7304 -6.7315 2.6033 36 1 -0.0323 -5.8703 6.2152 37 1 1.8940 -10.4667 6.8791 38 1 0.6321 -12.9724 7.4623 39 1 -1.0098 -12.9885 6.7366 40 1 -0.6319 -11.8604 9.1836 41 1 -1.7091 -11.0593 7.9958 42 1 2.3042 -5.6063 0.5721 43 1 2.9024 -4.2537 1.5636 44 1 1.0401 -4.0604 -0.8488 45 1 2.7331 -3.5130 -0.7667 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327631860.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:51 Heat of formation + Delta-G solvation = -33.283965 kcal Electronic energy + Delta-G solvation = -26461.764348 eV Core-core repulsion = 22606.164132 eV Total energy + Delta-G solvation = -3855.600216 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.59124 -40.53225 -39.61186 -36.87412 -36.18449 -34.42272 -32.86156 -31.65321 -31.42975 -30.02120 -28.09310 -26.56787 -25.19313 -24.43577 -23.97591 -23.70308 -22.94014 -20.96610 -20.45055 -19.43029 -18.75872 -18.35203 -17.72479 -17.01312 -16.85780 -16.43138 -16.23532 -16.12382 -15.57715 -15.42281 -15.31930 -15.05605 -14.77594 -14.72067 -14.58304 -14.26728 -13.95672 -13.86411 -13.59196 -13.56046 -13.04453 -12.92585 -12.58572 -12.52921 -12.41364 -12.29781 -12.08850 -11.98387 -11.77708 -11.39711 -11.34338 -11.25090 -11.17799 -10.56301 -10.52636 -10.28648 -9.93446 -9.34888 -8.67339 -7.88039 -5.33099 -0.43011 0.24773 0.75233 1.45405 1.46965 1.56673 1.71320 2.20265 2.50711 2.72894 3.17734 3.29603 3.41019 3.61490 3.70877 3.80528 3.90546 3.98397 4.05552 4.09060 4.15198 4.21135 4.22534 4.43746 4.50789 4.58988 4.59232 4.70982 4.72391 4.74006 4.87303 4.89513 4.94830 5.04037 5.08822 5.22052 5.25860 5.39012 5.50560 5.63982 5.72298 5.85588 6.01751 6.37965 6.39238 6.67619 7.14937 7.86778 8.37932 9.18081 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.036060 B = 0.001890 C = 0.001851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.292707 B =14810.452071 C =15124.004954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.052 4.052 3 Si 0.966 3.034 4 H -0.284 1.284 5 H -0.293 1.293 6 H -0.271 1.271 7 C -0.261 4.261 8 H 0.065 0.935 9 N -0.611 5.611 10 C 0.180 3.820 11 C -0.152 4.152 12 C 0.108 3.892 13 N -0.677 5.677 14 C 0.136 3.864 15 C -0.213 4.213 16 C 0.024 3.976 17 N -0.470 5.470 18 C -0.016 4.016 19 C 0.317 3.683 20 O -0.387 6.387 21 C 0.018 3.982 22 C 0.010 3.990 23 O -0.383 6.383 24 S 0.213 5.787 25 C -0.104 4.104 26 C 0.140 3.860 27 H 0.249 0.751 28 H 0.050 0.950 29 H -0.004 1.004 30 H 0.051 0.949 31 H 0.064 0.936 32 H 0.071 0.929 33 H 0.344 0.656 34 H 0.061 0.939 35 H 0.089 0.911 36 H 0.186 0.814 37 H 0.127 0.873 38 H 0.104 0.896 39 H 0.137 0.863 40 H 0.131 0.869 41 H 0.072 0.928 42 H 0.079 0.921 43 H 0.051 0.949 44 H 0.015 0.985 45 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.548 -27.229 15.372 31.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.247 4.247 3 Si 0.794 3.206 4 H -0.211 1.211 5 H -0.219 1.219 6 H -0.196 1.196 7 C -0.392 4.392 8 H 0.083 0.917 9 N -0.335 5.335 10 C 0.054 3.946 11 C -0.193 4.193 12 C -0.002 4.002 13 N -0.307 5.307 14 C 0.005 3.995 15 C -0.335 4.335 16 C -0.128 4.128 17 N -0.186 5.186 18 C -0.294 4.294 19 C 0.218 3.782 20 O -0.307 6.307 21 C -0.057 4.057 22 C -0.066 4.066 23 O -0.303 6.303 24 S 0.468 5.532 25 C -0.143 4.143 26 C 0.014 3.986 27 H 0.058 0.942 28 H 0.069 0.931 29 H 0.014 0.986 30 H 0.070 0.930 31 H 0.083 0.917 32 H 0.089 0.911 33 H 0.162 0.838 34 H 0.079 0.921 35 H 0.108 0.892 36 H 0.203 0.797 37 H 0.144 0.856 38 H 0.122 0.878 39 H 0.155 0.845 40 H 0.149 0.851 41 H 0.091 0.909 42 H 0.097 0.903 43 H 0.070 0.930 44 H 0.033 0.967 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -1.381 -28.249 14.628 31.842 hybrid contribution -0.416 2.986 0.717 3.100 sum -1.797 -25.262 15.345 29.613 Atomic orbital electron populations 1.70179 1.06619 1.25793 1.55547 1.25794 0.96063 1.01486 1.01401 0.85306 0.78071 0.79646 0.77611 1.21065 1.21901 1.19639 1.19502 0.92803 0.86122 1.40739 0.91721 1.44329 1.35975 1.02407 1.50741 1.20493 0.87784 0.97446 0.88898 1.22664 1.00638 0.97312 0.98660 1.21303 0.97948 0.88839 0.92062 1.60742 1.18958 1.38174 1.12838 1.20283 0.91802 0.94198 0.93206 1.26169 1.09881 0.98450 0.98994 1.21972 1.02942 0.99321 0.88594 1.66154 1.14466 0.98453 1.39513 1.27544 1.06955 0.98302 0.96549 1.22171 0.97193 0.81311 0.77546 1.89236 1.80119 1.30121 1.31242 1.24775 1.02080 0.92591 0.86287 1.24555 0.93669 0.85789 1.02600 1.89027 1.59193 1.52074 1.30026 1.83948 1.62418 1.02074 1.04808 1.21797 0.96892 0.98994 0.96659 1.21080 0.97334 0.85855 0.94282 0.94152 0.93137 0.98559 0.93025 0.91710 0.91111 0.83766 0.92074 0.89220 0.79734 0.85640 0.87839 0.84527 0.85107 0.90921 0.90259 0.93023 0.96718 0.92765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.69 11.20 21.65 0.24 -55.44 16 2 C -0.05 -2.95 4.92 84.86 0.42 -2.53 16 3 Si 0.97 45.26 29.59 68.60 2.03 47.29 16 4 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 5 H -0.29 -13.73 7.11 99.48 0.71 -13.03 16 6 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 7 C -0.26 -14.52 9.58 84.03 0.81 -13.71 16 8 H 0.07 3.51 7.89 -2.91 -0.02 3.49 16 9 N -0.61 -30.76 3.00 -699.10 -2.09 -32.86 16 10 C 0.18 8.63 5.30 86.36 0.46 9.09 16 11 C -0.15 -5.46 5.34 30.68 0.16 -5.30 16 12 C 0.11 3.33 2.42 44.95 0.11 3.44 16 13 N -0.68 -17.19 6.24 -495.39 -3.09 -20.27 16 14 C 0.14 3.02 6.01 85.56 0.51 3.54 16 15 C -0.21 -4.76 6.11 24.64 0.15 -4.61 16 16 C 0.02 0.58 11.25 83.66 0.94 1.52 16 17 N -0.47 -12.42 10.36 -191.44 -1.98 -14.41 16 18 C -0.02 -0.38 6.95 88.52 0.62 0.24 16 19 C 0.32 5.88 4.56 71.24 0.32 6.20 16 20 O -0.39 -6.07 10.95 -126.22 -1.38 -7.45 16 21 C 0.02 0.13 7.95 72.64 0.58 0.71 16 22 C 0.01 0.10 8.07 72.64 0.59 0.68 16 23 O -0.38 -7.47 11.07 -126.22 -1.40 -8.87 16 24 S 0.21 4.47 22.75 -56.49 -1.29 3.19 16 25 C -0.10 -3.45 5.69 30.67 0.17 -3.27 16 26 C 0.14 5.80 6.52 86.36 0.56 6.36 16 27 H 0.25 14.38 8.31 -92.71 -0.77 13.61 16 28 H 0.05 2.77 6.06 -2.39 -0.01 2.75 16 29 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 30 H 0.05 1.92 8.14 -2.38 -0.02 1.90 16 31 H 0.06 2.06 7.42 -2.38 -0.02 2.05 16 32 H 0.07 2.23 7.80 -2.39 -0.02 2.21 16 33 H 0.34 8.68 8.48 -89.69 -0.76 7.92 16 34 H 0.06 1.32 7.41 -2.39 -0.02 1.30 16 35 H 0.09 1.92 8.05 -2.39 -0.02 1.90 16 36 H 0.19 3.78 8.06 -2.91 -0.02 3.76 16 37 H 0.13 1.93 8.14 -2.38 -0.02 1.91 16 38 H 0.10 0.34 8.14 -2.39 -0.02 0.32 16 39 H 0.14 0.35 8.14 -2.39 -0.02 0.33 16 40 H 0.13 0.60 8.14 -2.39 -0.02 0.58 16 41 H 0.07 0.79 8.14 -2.38 -0.02 0.77 16 42 H 0.08 2.30 8.14 -2.39 -0.02 2.29 16 43 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 44 H 0.01 0.62 8.14 -2.38 -0.02 0.60 16 45 H 0.05 2.21 7.93 -2.39 -0.02 2.19 16 Total: -1.00 -69.65 375.97 -2.32 -71.97 By element: Atomic # 1 Polarization: 14.25 SS G_CDS: 0.24 Total: 14.50 kcal Atomic # 6 Polarization: -4.04 SS G_CDS: 6.40 Total: 2.36 kcal Atomic # 7 Polarization: -116.06 SS G_CDS: -6.93 Total: -122.98 kcal Atomic # 8 Polarization: -13.54 SS G_CDS: -2.78 Total: -16.31 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 2.03 Total: 47.29 kcal Atomic # 16 Polarization: 4.47 SS G_CDS: -1.29 Total: 3.19 kcal Total: -69.65 -2.32 -71.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327631860.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.684 kcal (2) G-P(sol) polarization free energy of solvation -69.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds