Wall clock time and date at job start Sat Apr 11 2020 05:37:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 S 1.70442 * 124.59253 * 2 1 4 4 C 1.75497 * 92.44691 * 180.02562 * 3 2 1 5 5 C 1.32772 * 110.57897 * 359.73959 * 4 3 2 6 6 C 1.36014 * 124.58995 * 180.02562 * 2 1 3 7 7 C 1.47189 * 123.46220 * 359.93217 * 6 2 1 8 8 O 1.21634 * 119.99914 * 0.02562 * 7 6 2 9 9 N 1.34777 * 119.99538 * 180.02562 * 7 6 2 10 10 C 1.46507 * 119.99512 * 180.02562 * 9 7 6 11 11 H 1.09001 * 109.46964 * 35.00719 * 10 9 7 12 12 C 1.52997 * 109.47267 * 275.00418 * 10 9 7 13 13 C 1.52995 * 109.46874 * 155.00522 * 10 9 7 14 14 H 1.09004 * 109.47127 * 295.00248 * 13 10 9 15 15 C 1.53000 * 109.47240 * 55.00013 * 13 10 9 16 16 N 1.46905 * 109.47133 * 175.00176 * 13 10 9 17 17 C 1.46902 * 110.99800 * 154.99741 * 16 13 10 18 18 C 1.50706 * 109.46577 * 180.02562 * 17 16 13 19 19 O 1.21288 * 120.00224 * 359.72334 * 18 17 16 20 20 N 1.34777 * 119.99766 * 179.97438 * 18 17 16 21 21 C 1.37095 * 119.99970 * 179.97438 * 20 18 17 22 22 H 1.07999 * 119.99992 * 0.02562 * 21 20 18 23 23 C 1.38956 * 120.00025 * 180.02562 * 21 20 18 24 24 N 1.31404 * 120.00146 * 180.02562 * 23 21 20 25 25 Si 1.86803 * 119.99914 * 359.97438 * 23 21 20 26 26 H 1.48508 * 109.46742 * 90.00261 * 25 23 21 27 27 H 1.48501 * 109.47216 * 210.00118 * 25 23 21 28 28 H 1.48499 * 109.47135 * 330.00460 * 25 23 21 29 29 H 1.08999 * 109.47258 * 269.95779 * 1 2 3 30 30 H 1.09001 * 109.47133 * 29.96084 * 1 2 3 31 31 H 1.09004 * 109.47032 * 149.95401 * 1 2 3 32 32 H 1.08008 * 124.71495 * 180.02562 * 4 3 2 33 33 H 1.07997 * 123.46407 * 180.24462 * 5 4 3 34 34 H 0.96998 * 120.00290 * 0.02562 * 9 7 6 35 35 H 1.09006 * 109.46847 * 60.00137 * 12 10 9 36 36 H 1.09004 * 109.47150 * 179.97438 * 12 10 9 37 37 H 1.09001 * 109.47374 * 300.00050 * 12 10 9 38 38 H 1.08996 * 109.47051 * 60.00373 * 15 13 10 39 39 H 1.09002 * 109.46808 * 179.97438 * 15 13 10 40 40 H 1.09001 * 109.47129 * 300.00009 * 15 13 10 41 41 H 1.00891 * 110.99988 * 278.95156 * 16 13 10 42 42 H 1.09000 * 109.47263 * 60.00269 * 17 16 13 43 43 H 1.09001 * 109.47582 * 299.99548 * 17 16 13 44 44 H 0.96999 * 120.00043 * 0.02562 * 20 18 17 45 45 H 0.96996 * 120.00328 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.4747 1.4031 0.0000 4 6 3.9606 0.4693 -0.0008 5 6 3.6944 -0.8314 0.0046 6 6 2.2791 -1.1197 -0.0005 7 6 1.7290 -2.4849 0.0003 8 8 0.5247 -2.6553 0.0011 9 7 2.5598 -3.5462 0.0003 10 6 2.0122 -4.9050 0.0006 11 1 1.0956 -4.9275 -0.5888 12 6 1.7052 -5.3309 1.4376 13 6 3.0342 -5.8667 -0.6090 14 1 3.1864 -5.6173 -1.6592 15 6 4.3615 -5.7437 0.1419 16 7 2.5358 -7.2444 -0.5002 17 6 3.1285 -8.1019 -1.5352 18 6 2.5942 -9.5039 -1.3924 19 8 1.8020 -9.7642 -0.5117 20 7 3.0007 -10.4695 -2.2403 21 6 2.5152 -11.7449 -2.1101 22 1 1.8066 -11.9758 -1.3284 23 6 2.9346 -12.7406 -2.9839 24 7 2.4689 -13.9630 -2.8594 25 14 4.1596 -12.3411 -4.3364 26 1 5.5404 -12.5486 -3.8306 27 1 3.9197 -13.2315 -5.5004 28 1 3.9926 -10.9256 -4.7531 29 1 -0.3634 -0.0008 1.0276 30 1 -0.3633 0.8903 -0.5132 31 1 -0.3633 -0.8896 -0.5146 32 1 4.9538 0.8938 -0.0006 33 1 4.4576 -1.5955 0.0091 34 1 3.5202 -3.4103 0.0001 35 1 0.9771 -4.6457 1.8719 36 1 1.2974 -6.3418 1.4378 37 1 2.6219 -5.3085 2.0270 38 1 4.2093 -5.9931 1.1920 39 1 5.0894 -6.4292 -0.2921 40 1 4.7313 -4.7215 0.0611 41 1 2.7064 -7.6189 0.4210 42 1 4.2125 -8.1124 -1.4215 43 1 2.8702 -7.7137 -2.5205 44 1 3.6374 -10.2622 -2.9421 45 1 2.7614 -14.6580 -3.4695 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329028705.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:35 Heat of formation + Delta-G solvation = -37.318252 kcal Electronic energy + Delta-G solvation = -26439.582287 eV Core-core repulsion = 22583.807132 eV Total energy + Delta-G solvation = -3855.775155 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.38890 -38.75392 -37.82580 -36.91068 -34.61779 -33.87099 -32.27208 -31.69454 -31.07935 -29.23322 -27.44871 -26.57178 -24.91961 -24.04243 -23.24847 -21.92837 -19.89376 -19.77140 -19.39673 -18.41504 -17.66603 -17.01161 -16.11295 -15.90886 -15.73610 -15.32191 -15.07466 -14.82412 -14.58794 -14.14538 -13.99722 -13.80269 -13.69132 -13.53506 -13.21098 -12.97442 -12.96645 -12.59314 -12.43568 -12.34657 -12.28922 -12.05891 -11.97767 -11.91497 -11.56024 -11.43763 -11.18014 -11.00647 -10.88200 -10.60297 -9.98098 -9.91036 -9.57755 -9.31441 -9.15306 -8.83265 -8.60705 -8.21335 -8.15822 -6.31276 -3.82720 0.43168 1.08242 1.48933 1.60986 3.01760 3.02203 3.05674 3.14497 3.14896 3.73377 4.08832 4.13213 4.26728 4.50354 4.63350 4.69862 4.76489 4.87293 4.92322 5.07213 5.16139 5.20992 5.29592 5.31687 5.34414 5.52218 5.53807 5.54656 5.60290 5.70318 5.73079 5.81727 5.84981 5.91721 5.92604 5.95983 6.11177 6.33465 6.43911 7.03277 7.33966 7.52601 7.57849 8.07354 8.14296 8.59304 8.94773 9.42071 9.82123 10.81837 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.025617 B = 0.001865 C = 0.001820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.757003 B =15009.151259 C =15380.362999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.136 4.136 3 S 0.175 5.825 4 C -0.236 4.236 5 C -0.105 4.105 6 C -0.178 4.178 7 C 0.580 3.420 8 O -0.533 6.533 9 N -0.720 5.720 10 C 0.155 3.845 11 H 0.098 0.902 12 C -0.163 4.163 13 C 0.078 3.922 14 H 0.082 0.918 15 C -0.189 4.189 16 N -0.658 5.658 17 C 0.048 3.952 18 C 0.450 3.550 19 O -0.563 6.563 20 N -0.590 5.590 21 C -0.305 4.305 22 H 0.120 0.880 23 C 0.041 3.959 24 N -0.881 5.881 25 Si 0.880 3.120 26 H -0.271 1.271 27 H -0.276 1.276 28 H -0.269 1.269 29 H 0.080 0.920 30 H 0.066 0.934 31 H 0.106 0.894 32 H 0.168 0.832 33 H 0.146 0.854 34 H 0.395 0.605 35 H 0.056 0.944 36 H 0.082 0.918 37 H 0.052 0.948 38 H 0.066 0.934 39 H 0.061 0.939 40 H 0.056 0.944 41 H 0.355 0.645 42 H 0.046 0.954 43 H 0.088 0.912 44 H 0.370 0.630 45 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.022 32.252 4.470 33.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.257 4.257 3 S 0.440 5.560 4 C -0.371 4.371 5 C -0.135 4.135 6 C -0.194 4.194 7 C 0.366 3.634 8 O -0.411 6.411 9 N -0.373 5.373 10 C 0.050 3.950 11 H 0.116 0.884 12 C -0.221 4.221 13 C -0.034 4.034 14 H 0.101 0.899 15 C -0.248 4.248 16 N -0.291 5.291 17 C -0.084 4.084 18 C 0.235 3.765 19 O -0.445 6.445 20 N -0.230 5.230 21 C -0.433 4.433 22 H 0.137 0.863 23 C -0.162 4.162 24 N -0.521 5.521 25 Si 0.706 3.294 26 H -0.197 1.197 27 H -0.202 1.202 28 H -0.195 1.195 29 H 0.099 0.901 30 H 0.085 0.915 31 H 0.125 0.875 32 H 0.186 0.814 33 H 0.164 0.836 34 H 0.232 0.768 35 H 0.075 0.925 36 H 0.101 0.899 37 H 0.071 0.929 38 H 0.085 0.915 39 H 0.080 0.920 40 H 0.074 0.926 41 H 0.176 0.824 42 H 0.064 0.936 43 H 0.106 0.894 44 H 0.203 0.797 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 4.745 33.343 4.633 33.996 hybrid contribution 2.961 -1.461 -0.863 3.412 sum 7.706 31.882 3.771 33.016 Atomic orbital electron populations 1.20670 0.86606 1.04536 1.03723 1.24579 1.01960 0.96781 1.02363 1.83121 0.95037 1.07495 1.70303 1.25398 1.02371 0.97251 1.12057 1.21200 0.94521 0.96355 1.01391 1.20186 0.92688 0.93851 1.12719 1.17518 0.86184 0.83597 0.76097 1.90752 1.14386 1.85987 1.50003 1.46070 1.09818 1.05976 1.75412 1.20892 0.97399 0.78938 0.97760 0.88420 1.22180 1.01456 1.03042 0.95458 1.21730 0.91772 0.90026 0.99830 0.89935 1.22623 0.98571 1.01731 1.01913 1.60007 1.61069 0.99838 1.08159 1.21744 0.96688 0.93234 0.96763 1.19690 0.86006 0.85675 0.85100 1.90571 1.36465 1.82121 1.35360 1.42202 1.41509 1.09709 1.29583 1.19434 1.25011 0.82349 1.16550 0.86258 1.25045 0.98021 0.95146 0.97998 1.69616 1.43327 1.01101 1.38051 0.86670 0.81826 0.78527 0.82344 1.19695 1.20169 1.19479 0.90114 0.91543 0.87532 0.81412 0.83610 0.76848 0.92477 0.89950 0.92902 0.91475 0.91979 0.92561 0.82446 0.93638 0.89425 0.79720 0.91614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.84 9.60 36.01 0.35 -0.49 16 2 C -0.14 -1.23 6.34 -35.11 -0.22 -1.45 16 3 S 0.18 1.12 22.97 -107.50 -2.47 -1.35 16 4 C -0.24 -1.40 11.12 28.86 0.32 -1.08 16 5 C -0.11 -0.74 9.91 -39.02 -0.39 -1.12 16 6 C -0.18 -1.71 5.98 -104.63 -0.63 -2.34 16 7 C 0.58 6.74 7.75 -12.63 -0.10 6.64 16 8 O -0.53 -7.87 13.72 5.25 0.07 -7.80 16 9 N -0.72 -6.91 4.97 -54.95 -0.27 -7.18 16 10 C 0.15 1.76 2.63 -67.93 -0.18 1.58 16 11 H 0.10 1.38 7.58 -51.93 -0.39 0.99 16 12 C -0.16 -1.89 8.86 37.16 0.33 -1.56 16 13 C 0.08 0.84 2.64 -67.71 -0.18 0.66 16 14 H 0.08 0.87 7.80 -51.93 -0.40 0.46 16 15 C -0.19 -1.60 8.68 37.16 0.32 -1.28 16 16 N -0.66 -9.57 5.23 -107.98 -0.56 -10.13 16 17 C 0.05 0.77 5.97 -4.97 -0.03 0.74 16 18 C 0.45 10.04 7.82 -10.98 -0.09 9.95 16 19 O -0.56 -14.96 15.78 5.55 0.09 -14.87 16 20 N -0.59 -13.93 5.09 -10.96 -0.06 -13.99 16 21 C -0.30 -8.60 10.16 -14.93 -0.15 -8.75 16 22 H 0.12 3.86 7.39 -52.49 -0.39 3.47 16 23 C 0.04 1.12 5.50 -17.47 -0.10 1.02 16 24 N -0.88 -25.73 13.96 55.50 0.77 -24.96 16 25 Si 0.88 19.26 27.74 -169.99 -4.71 14.55 16 26 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 27 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 28 H -0.27 -5.37 6.52 56.52 0.37 -5.00 16 29 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.11 1.16 5.94 -51.93 -0.31 0.85 16 32 H 0.17 0.58 8.06 -52.48 -0.42 0.16 16 33 H 0.15 0.68 7.10 -52.49 -0.37 0.30 16 34 H 0.40 2.77 5.12 -40.82 -0.21 2.56 16 35 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 36 H 0.08 1.07 7.13 -51.93 -0.37 0.70 16 37 H 0.05 0.53 6.57 -51.93 -0.34 0.19 16 38 H 0.07 0.58 6.55 -51.93 -0.34 0.24 16 39 H 0.06 0.54 7.45 -51.93 -0.39 0.16 16 40 H 0.06 0.35 6.29 -51.93 -0.33 0.02 16 41 H 0.35 5.35 7.39 -39.30 -0.29 5.06 16 42 H 0.05 0.61 7.44 -51.93 -0.39 0.23 16 43 H 0.09 1.26 8.06 -51.93 -0.42 0.85 16 44 H 0.37 7.63 5.76 -40.82 -0.24 7.40 16 45 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 377.49 15.07 5.69 5.69 Total: -1.00 -34.19 377.49 -8.22 -42.41 By element: Atomic # 1 Polarization: 21.15 SS G_CDS: -6.03 Total: 15.12 kcal Atomic # 6 Polarization: 3.26 SS G_CDS: -0.74 Total: 2.52 kcal Atomic # 7 Polarization: -56.14 SS G_CDS: -0.12 Total: -56.26 kcal Atomic # 8 Polarization: -22.84 SS G_CDS: 0.16 Total: -22.68 kcal Atomic # 14 Polarization: 19.26 SS G_CDS: -4.71 Total: 14.55 kcal Atomic # 16 Polarization: 1.12 SS G_CDS: -2.47 Total: -1.35 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -34.19 -8.22 -42.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329028705.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.090 kcal (2) G-P(sol) polarization free energy of solvation -34.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds