Wall clock time and date at job start Sat Apr 11 2020 05:37:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 S 1.70443 * 124.59222 * 2 1 4 4 C 1.75508 * 92.44655 * 180.02562 * 3 2 1 5 5 C 1.32768 * 110.57508 * 359.71538 * 4 3 2 6 6 C 1.36015 * 124.59144 * 180.02562 * 2 1 3 7 7 C 1.47185 * 123.46053 * 359.97438 * 6 2 1 8 8 O 1.21643 * 119.99998 * 0.02562 * 7 6 2 9 9 N 1.34773 * 120.00084 * 180.27472 * 7 6 2 10 10 C 1.46500 * 120.00431 * 179.72617 * 9 7 6 11 11 H 1.09008 * 109.46846 * 325.00097 * 10 9 7 12 12 C 1.52996 * 109.47098 * 85.00044 * 10 9 7 13 13 C 1.52998 * 109.47391 * 205.00423 * 10 9 7 14 14 H 1.08994 * 109.47018 * 299.99728 * 13 10 9 15 15 C 1.53005 * 109.47340 * 59.99883 * 13 10 9 16 16 N 1.46900 * 109.47170 * 179.97438 * 13 10 9 17 17 C 1.46900 * 111.00341 * 154.99889 * 16 13 10 18 18 C 1.50698 * 109.47474 * 180.02562 * 17 16 13 19 19 O 1.21290 * 119.99955 * 359.97438 * 18 17 16 20 20 N 1.34770 * 120.00070 * 180.02562 * 18 17 16 21 21 C 1.37101 * 120.00228 * 179.97438 * 20 18 17 22 22 H 1.07999 * 119.99549 * 0.02562 * 21 20 18 23 23 C 1.38948 * 120.00297 * 179.97438 * 21 20 18 24 24 N 1.31419 * 120.00013 * 0.02562 * 23 21 20 25 25 Si 1.86794 * 120.00200 * 179.97438 * 23 21 20 26 26 H 1.48504 * 109.46942 * 0.02562 * 25 23 21 27 27 H 1.48497 * 109.46920 * 120.00191 * 25 23 21 28 28 H 1.48495 * 109.47228 * 240.00374 * 25 23 21 29 29 H 1.08994 * 109.47203 * 269.97714 * 1 2 3 30 30 H 1.09001 * 109.47163 * 29.98312 * 1 2 3 31 31 H 1.09007 * 109.47090 * 149.97748 * 1 2 3 32 32 H 1.08003 * 124.71195 * 179.97438 * 4 3 2 33 33 H 1.08001 * 123.46195 * 180.24453 * 5 4 3 34 34 H 0.97000 * 120.00112 * 359.73054 * 9 7 6 35 35 H 1.09003 * 109.47061 * 180.02562 * 12 10 9 36 36 H 1.09004 * 109.47132 * 299.99933 * 12 10 9 37 37 H 1.08994 * 109.47099 * 60.00402 * 12 10 9 38 38 H 1.08998 * 109.47131 * 180.02562 * 15 13 10 39 39 H 1.08998 * 109.46895 * 300.00454 * 15 13 10 40 40 H 1.09002 * 109.46899 * 59.99933 * 15 13 10 41 41 H 1.00903 * 111.00238 * 31.04614 * 16 13 10 42 42 H 1.09003 * 109.47130 * 300.00396 * 17 16 13 43 43 H 1.09000 * 109.46821 * 59.99772 * 17 16 13 44 44 H 0.97000 * 120.00404 * 359.97438 * 20 18 17 45 45 H 0.96990 * 119.99880 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.4746 1.4031 0.0000 4 6 3.9607 0.4693 -0.0008 5 6 3.6944 -0.8314 0.0052 6 6 2.2792 -1.1197 -0.0005 7 6 1.7290 -2.4849 -0.0006 8 8 0.5246 -2.6553 -0.0006 9 7 2.5597 -3.5462 0.0045 10 6 2.0122 -4.9050 0.0105 11 1 1.0954 -4.9247 0.5998 12 6 1.7055 -5.3376 -1.4246 13 6 3.0340 -5.8639 0.6249 14 1 3.9507 -5.8442 0.0357 15 6 3.3407 -5.4313 2.0601 16 7 2.4847 -7.2263 0.6315 17 6 3.5597 -8.2274 0.6364 18 6 2.9592 -9.6095 0.6424 19 8 1.7541 -9.7471 0.6430 20 7 3.7611 -10.6927 0.6482 21 6 3.2147 -11.9501 0.6542 22 1 2.1417 -12.0726 0.6539 23 6 4.0414 -13.0669 0.6595 24 7 5.3471 -12.9178 0.6594 25 14 3.2970 -14.7800 0.6684 26 1 1.8156 -14.6760 0.6678 27 1 3.7415 -15.5191 -0.5404 28 1 3.7421 -15.5068 1.8845 29 1 -0.3633 -0.0004 1.0276 30 1 -0.3633 0.8901 -0.5136 31 1 -0.3634 -0.8898 -0.5142 32 1 4.9538 0.8937 -0.0014 33 1 4.4576 -1.5955 0.0097 34 1 3.5202 -3.4103 0.0043 35 1 1.2977 -6.3484 -1.4201 36 1 0.9775 -4.6545 -1.8623 37 1 2.6223 -5.3179 -2.0138 38 1 4.0689 -6.1141 2.4976 39 1 3.7480 -4.4203 2.0557 40 1 2.4238 -5.4510 2.6493 41 1 1.8616 -7.3688 -0.1493 42 1 4.1759 -8.1032 -0.2541 43 1 4.1757 -8.0946 1.5258 44 1 4.7248 -10.5827 0.6481 45 1 5.9242 -13.6973 0.6635 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329028708.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:41 Heat of formation + Delta-G solvation = -45.729390 kcal Electronic energy + Delta-G solvation = -26376.013894 eV Core-core repulsion = 22519.874004 eV Total energy + Delta-G solvation = -3856.139890 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.38483 -38.58707 -37.69832 -36.83004 -34.52767 -33.80864 -32.25335 -31.30101 -30.83375 -29.85440 -27.45923 -26.36809 -24.49748 -24.16088 -22.94399 -21.74533 -20.52400 -19.57560 -19.28795 -17.93155 -17.65783 -17.08780 -16.33097 -16.04772 -15.46413 -15.31472 -15.03120 -14.51418 -14.19353 -14.15164 -13.89996 -13.81326 -13.69024 -13.53757 -13.49026 -13.00461 -12.94234 -12.48622 -12.43337 -12.34112 -11.94918 -11.91307 -11.67742 -11.58333 -11.45315 -11.42442 -11.31869 -11.06062 -10.61753 -10.34111 -10.22481 -9.93213 -9.52119 -9.33060 -9.15412 -8.82698 -8.45869 -8.10388 -7.96200 -6.42014 -3.82678 0.43816 1.09206 1.49984 1.61868 2.99273 3.13810 3.16492 3.27166 3.34741 3.90488 4.11120 4.27678 4.34248 4.47872 4.59100 4.77135 4.85326 4.93456 5.12189 5.15071 5.17528 5.25016 5.31984 5.37087 5.48580 5.53864 5.57205 5.64808 5.68208 5.78424 5.85938 5.86879 5.93662 5.96491 6.01329 6.14354 6.22844 6.32642 6.36744 7.18512 7.31617 7.55560 7.63702 8.04931 8.06539 8.61009 9.17963 9.54085 10.05466 10.75825 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.034831 B = 0.001754 C = 0.001704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.692255 B =15959.406104 C =16424.851530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.137 4.137 3 S 0.175 5.825 4 C -0.236 4.236 5 C -0.105 4.105 6 C -0.178 4.178 7 C 0.582 3.418 8 O -0.534 6.534 9 N -0.715 5.715 10 C 0.142 3.858 11 H 0.101 0.899 12 C -0.170 4.170 13 C 0.078 3.922 14 H 0.046 0.954 15 C -0.140 4.140 16 N -0.660 5.660 17 C 0.051 3.949 18 C 0.441 3.559 19 O -0.582 6.582 20 N -0.564 5.564 21 C -0.298 4.298 22 H 0.104 0.896 23 C 0.021 3.979 24 N -0.902 5.902 25 Si 0.930 3.070 26 H -0.268 1.268 27 H -0.282 1.282 28 H -0.281 1.281 29 H 0.081 0.919 30 H 0.065 0.935 31 H 0.106 0.894 32 H 0.169 0.831 33 H 0.148 0.852 34 H 0.398 0.602 35 H 0.074 0.926 36 H 0.064 0.936 37 H 0.056 0.944 38 H 0.058 0.942 39 H 0.051 0.949 40 H 0.064 0.936 41 H 0.352 0.648 42 H 0.044 0.956 43 H 0.087 0.913 44 H 0.392 0.608 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.959 29.622 -2.461 29.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.257 4.257 3 S 0.440 5.560 4 C -0.370 4.370 5 C -0.134 4.134 6 C -0.194 4.194 7 C 0.368 3.632 8 O -0.412 6.412 9 N -0.366 5.366 10 C 0.037 3.963 11 H 0.119 0.881 12 C -0.228 4.228 13 C -0.033 4.033 14 H 0.064 0.936 15 C -0.198 4.198 16 N -0.296 5.296 17 C -0.081 4.081 18 C 0.226 3.774 19 O -0.466 6.466 20 N -0.201 5.201 21 C -0.428 4.428 22 H 0.122 0.878 23 C -0.180 4.180 24 N -0.544 5.544 25 Si 0.757 3.243 26 H -0.192 1.192 27 H -0.208 1.208 28 H -0.207 1.207 29 H 0.099 0.901 30 H 0.084 0.916 31 H 0.124 0.876 32 H 0.186 0.814 33 H 0.165 0.835 34 H 0.232 0.768 35 H 0.092 0.908 36 H 0.083 0.917 37 H 0.075 0.925 38 H 0.077 0.923 39 H 0.070 0.930 40 H 0.083 0.917 41 H 0.174 0.826 42 H 0.062 0.938 43 H 0.105 0.895 44 H 0.225 0.775 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -0.954 30.750 -1.786 30.817 hybrid contribution 1.777 -2.287 -0.879 3.027 sum 0.823 28.464 -2.665 28.600 Atomic orbital electron populations 1.20666 0.86635 1.04470 1.03747 1.24575 1.01938 0.96805 1.02375 1.83125 0.95076 1.07484 1.70295 1.25402 1.02353 0.97244 1.12030 1.21214 0.94513 0.96398 1.01278 1.20158 0.92723 0.93737 1.12802 1.17506 0.86132 0.83568 0.76001 1.90750 1.14381 1.85980 1.50120 1.45842 1.09815 1.05630 1.75336 1.21086 0.98152 0.80047 0.96989 0.88117 1.22261 1.02090 1.02432 0.96065 1.21733 0.95487 0.89191 0.96883 0.93620 1.21807 1.02393 0.99772 0.95782 1.60176 1.18223 0.99449 1.51798 1.21724 0.93343 0.91859 1.01198 1.19790 0.87676 0.85413 0.84505 1.90532 1.14468 1.86300 1.55279 1.41865 1.08752 1.05042 1.64418 1.19762 0.94273 0.81356 1.47375 0.87836 1.25267 0.95183 1.00205 0.97365 1.69620 1.02590 1.31383 1.50771 0.85795 0.79367 0.81483 0.77682 1.19196 1.20794 1.20746 0.90082 0.91564 0.87593 0.81386 0.83475 0.76769 0.90763 0.91651 0.92534 0.92293 0.92974 0.91695 0.82559 0.93839 0.89526 0.77484 0.91945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.83 9.60 36.01 0.35 -0.49 16 2 C -0.14 -1.23 6.34 -35.11 -0.22 -1.45 16 3 S 0.17 1.13 22.97 -107.50 -2.47 -1.34 16 4 C -0.24 -1.43 11.12 28.86 0.32 -1.11 16 5 C -0.10 -0.74 9.91 -39.02 -0.39 -1.13 16 6 C -0.18 -1.71 5.98 -104.63 -0.63 -2.33 16 7 C 0.58 6.71 7.75 -12.63 -0.10 6.61 16 8 O -0.53 -7.77 13.72 5.24 0.07 -7.70 16 9 N -0.71 -6.92 4.36 -54.96 -0.24 -7.16 16 10 C 0.14 1.64 2.29 -67.93 -0.16 1.48 16 11 H 0.10 1.40 7.58 -51.92 -0.39 1.01 16 12 C -0.17 -1.94 9.25 37.16 0.34 -1.59 16 13 C 0.08 0.93 2.28 -67.71 -0.15 0.77 16 14 H 0.05 0.49 7.80 -51.93 -0.41 0.09 16 15 C -0.14 -1.58 9.26 37.16 0.34 -1.24 16 16 N -0.66 -10.51 5.93 -107.99 -0.64 -11.15 16 17 C 0.05 0.89 5.97 -4.98 -0.03 0.86 16 18 C 0.44 10.38 7.82 -10.99 -0.09 10.29 16 19 O -0.58 -15.85 15.78 5.55 0.09 -15.76 16 20 N -0.56 -14.26 5.29 -10.97 -0.06 -14.32 16 21 C -0.30 -8.33 9.68 -14.93 -0.14 -8.47 16 22 H 0.10 3.05 7.16 -52.49 -0.38 2.67 16 23 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 24 N -0.90 -24.50 13.05 55.50 0.72 -23.78 16 25 Si 0.93 21.10 29.55 -169.99 -5.02 16.08 16 26 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 27 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 28 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 29 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.11 1.13 5.94 -51.93 -0.31 0.83 16 32 H 0.17 0.61 8.06 -52.48 -0.42 0.19 16 33 H 0.15 0.70 7.10 -52.49 -0.37 0.33 16 34 H 0.40 2.85 6.93 -40.82 -0.28 2.57 16 35 H 0.07 0.90 6.21 -51.93 -0.32 0.58 16 36 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 37 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.06 0.69 7.45 -51.93 -0.39 0.30 16 39 H 0.05 0.47 7.45 -51.93 -0.39 0.09 16 40 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.35 5.81 5.87 -39.29 -0.23 5.58 16 42 H 0.04 0.67 8.06 -51.93 -0.42 0.26 16 43 H 0.09 1.39 7.44 -51.93 -0.39 1.00 16 44 H 0.39 9.44 7.90 -40.82 -0.32 9.12 16 45 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 LS Contribution 384.66 15.07 5.80 5.80 Total: -1.00 -33.08 384.66 -8.66 -41.73 By element: Atomic # 1 Polarization: 21.18 SS G_CDS: -6.26 Total: 14.91 kcal Atomic # 6 Polarization: 3.33 SS G_CDS: -0.64 Total: 2.68 kcal Atomic # 7 Polarization: -56.19 SS G_CDS: -0.21 Total: -56.40 kcal Atomic # 8 Polarization: -23.62 SS G_CDS: 0.16 Total: -23.46 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Atomic # 16 Polarization: 1.13 SS G_CDS: -2.47 Total: -1.34 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -33.08 -8.66 -41.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329028708.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.995 kcal (2) G-P(sol) polarization free energy of solvation -33.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds