Wall clock time and date at job start Sat Apr 11 2020 05:37:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31418 * 1 3 3 Si 1.86804 * 119.99701 * 2 1 4 4 H 1.48496 * 109.46851 * 240.00371 * 3 2 1 5 5 H 1.48500 * 109.47108 * 0.02562 * 3 2 1 6 6 H 1.48494 * 109.46683 * 120.00514 * 3 2 1 7 7 C 1.38943 * 119.99972 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99729 * 179.97438 * 7 2 1 9 9 N 1.37096 * 120.00312 * 359.97438 * 7 2 1 10 10 C 1.34776 * 120.00022 * 180.02562 * 9 7 2 11 11 O 1.21298 * 120.00216 * 359.97438 * 10 9 7 12 12 C 1.50697 * 120.00072 * 180.02562 * 10 9 7 13 13 N 1.46897 * 109.47379 * 180.02562 * 12 10 9 14 14 C 1.46906 * 111.00234 * 180.02562 * 13 12 10 15 15 H 1.08995 * 109.46937 * 34.99765 * 14 13 12 16 16 C 1.53004 * 109.46842 * 274.99854 * 14 13 12 17 17 O 1.42896 * 109.46849 * 294.99791 * 16 14 13 18 18 C 1.52996 * 109.47311 * 154.99780 * 14 13 12 19 19 N 1.46499 * 109.47351 * 305.00207 * 18 14 13 20 20 C 1.34772 * 120.00369 * 180.02562 * 19 18 14 21 21 O 1.21572 * 120.00081 * 359.97438 * 20 19 18 22 22 C 1.47696 * 120.00302 * 179.97438 * 20 19 18 23 23 C 1.39656 * 120.16419 * 359.97438 * 22 20 19 24 24 C 1.37856 * 119.88078 * 180.02562 * 23 22 20 25 25 C 1.38465 * 120.21422 * 0.02562 * 24 23 22 26 26 C 1.38207 * 120.34023 * 359.97438 * 25 24 23 27 27 C 1.38319 * 120.11424 * 0.02562 * 26 25 24 28 28 F 1.35101 * 120.10795 * 180.02562 * 27 26 25 29 29 H 0.97001 * 120.00291 * 359.97438 * 1 2 3 30 30 H 0.96999 * 119.99936 * 359.97438 * 9 7 2 31 31 H 1.09000 * 109.47343 * 59.99638 * 12 10 9 32 32 H 1.09007 * 109.47071 * 300.00169 * 12 10 9 33 33 H 1.00901 * 111.00099 * 56.04268 * 13 12 10 34 34 H 1.09003 * 109.47065 * 54.99951 * 16 14 13 35 35 H 1.08997 * 109.46979 * 175.00288 * 16 14 13 36 36 H 0.96707 * 113.99637 * 180.02562 * 17 16 14 37 37 H 1.08993 * 109.47243 * 184.99923 * 18 14 13 38 38 H 1.09004 * 109.47425 * 65.00006 * 18 14 13 39 39 H 0.97009 * 119.99695 * 359.97438 * 19 18 14 40 40 H 1.08006 * 120.06057 * 0.04413 * 23 22 20 41 41 H 1.07995 * 119.89426 * 180.27593 * 24 23 22 42 42 H 1.08000 * 119.82778 * 179.97438 * 25 24 23 43 43 H 1.07994 * 119.93912 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1017 1.6965 -1.2125 5 1 1.2831 2.7465 0.0006 6 1 3.1019 1.6964 1.2124 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2032 -0.0010 9 7 1.3235 -2.3906 -0.0005 10 6 1.9974 -3.5578 -0.0005 11 8 3.2104 -3.5578 -0.0010 12 6 1.2440 -4.8629 -0.0011 13 7 2.1986 -5.9794 -0.0004 14 6 1.4983 -7.2708 -0.0015 15 1 0.5858 -7.1887 -0.5919 16 6 1.1432 -7.6596 1.4350 17 8 2.3429 -7.8808 2.1790 18 6 2.4051 -8.3422 -0.6105 19 7 2.8419 -7.9133 -1.9415 20 6 3.6531 -8.7039 -2.6718 21 8 4.0227 -9.7728 -2.2258 22 6 4.0930 -8.2719 -4.0138 23 6 3.6701 -7.0450 -4.5297 24 6 4.0838 -6.6477 -5.7833 25 6 4.9168 -7.4614 -6.5325 26 6 5.3408 -8.6773 -6.0308 27 6 4.9341 -9.0896 -4.7746 28 9 5.3490 -10.2780 -4.2841 29 1 -0.4850 0.8400 0.0004 30 1 0.3535 -2.3906 0.0002 31 1 0.6176 -4.9205 -0.8913 32 1 0.6169 -4.9208 0.8886 33 1 2.8329 -5.9123 0.7814 34 1 0.5713 -6.8555 1.8982 35 1 0.5469 -8.5720 1.4276 36 1 2.1934 -8.1318 3.1009 37 1 1.8552 -9.2795 -0.6931 38 1 3.2762 -8.4871 0.0285 39 1 2.5467 -7.0606 -2.2975 40 1 3.0202 -6.4083 -3.9476 41 1 3.7605 -5.6970 -6.1806 42 1 5.2368 -7.1441 -7.5140 43 1 5.9907 -9.3067 -6.6205 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331667980.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:50 Heat of formation + Delta-G solvation = -135.574564 kcal Electronic energy + Delta-G solvation = -28796.816328 eV Core-core repulsion = 24370.567284 eV Total energy + Delta-G solvation = -4426.249045 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.143 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -48.92161 -40.09179 -38.84219 -38.25082 -37.60872 -35.46796 -34.17994 -33.68278 -31.78658 -31.26509 -30.68050 -29.90430 -26.24620 -26.09875 -24.09031 -23.76920 -22.68325 -20.93411 -20.51478 -19.38282 -18.34377 -17.97180 -17.59847 -17.17327 -16.71901 -16.17735 -15.84927 -15.62997 -15.45229 -15.29358 -15.06573 -14.72098 -14.54427 -14.40180 -14.27770 -13.83873 -13.68118 -13.40591 -13.25603 -13.19887 -12.53533 -12.34033 -12.24102 -12.09756 -11.85876 -11.65244 -11.56711 -11.50991 -11.29330 -11.06080 -10.47940 -10.26520 -10.20226 -9.89660 -9.54559 -9.41299 -9.02748 -8.85770 -8.54403 -8.15816 -8.01091 -6.46511 -3.87452 0.53026 0.93999 2.76209 3.12960 3.16692 3.22841 3.27185 3.57431 3.84771 3.88794 4.01356 4.12383 4.35812 4.42383 4.54566 4.68674 4.71352 4.86869 4.98719 5.03230 5.09456 5.16189 5.19300 5.26930 5.39013 5.47571 5.65765 5.71126 5.75808 5.79967 5.88223 5.91322 6.03497 6.09408 6.20167 6.47314 6.56045 7.08746 7.42510 7.50637 7.58010 7.61249 8.01149 8.25080 8.56047 9.13221 9.48875 10.00345 10.71049 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.009958 B = 0.002841 C = 0.002303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2811.024898 B = 9853.963671 C =12152.549078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.023 3.977 3 Si 0.930 3.070 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.274 1.274 7 C -0.300 4.300 8 H 0.103 0.897 9 N -0.563 5.563 10 C 0.439 3.561 11 O -0.580 6.580 12 C 0.047 3.953 13 N -0.660 5.660 14 C 0.074 3.926 15 H 0.095 0.905 16 C 0.047 3.953 17 O -0.565 6.565 18 C 0.138 3.862 19 N -0.705 5.705 20 C 0.555 3.445 21 O -0.536 6.536 22 C -0.170 4.170 23 C -0.053 4.053 24 C -0.138 4.138 25 C -0.067 4.067 26 C -0.169 4.169 27 C 0.155 3.845 28 F -0.117 7.117 29 H 0.272 0.728 30 H 0.392 0.608 31 H 0.085 0.915 32 H 0.043 0.957 33 H 0.364 0.636 34 H 0.052 0.948 35 H 0.051 0.949 36 H 0.380 0.620 37 H 0.067 0.933 38 H 0.080 0.920 39 H 0.408 0.592 40 H 0.140 0.860 41 H 0.138 0.862 42 H 0.136 0.864 43 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.181 -15.912 -7.679 17.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.178 4.178 3 Si 0.757 3.243 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.430 4.430 8 H 0.120 0.880 9 N -0.200 5.200 10 C 0.225 3.775 11 O -0.464 6.464 12 C -0.086 4.086 13 N -0.294 5.294 14 C -0.037 4.037 15 H 0.113 0.887 16 C -0.033 4.033 17 O -0.370 6.370 18 C 0.014 3.986 19 N -0.357 5.357 20 C 0.341 3.659 21 O -0.414 6.414 22 C -0.174 4.174 23 C -0.071 4.071 24 C -0.156 4.156 25 C -0.085 4.085 26 C -0.188 4.188 27 C 0.135 3.865 28 F -0.095 7.095 29 H 0.082 0.918 30 H 0.225 0.775 31 H 0.104 0.896 32 H 0.061 0.939 33 H 0.186 0.814 34 H 0.070 0.930 35 H 0.069 0.931 36 H 0.228 0.772 37 H 0.085 0.915 38 H 0.099 0.901 39 H 0.245 0.755 40 H 0.158 0.842 41 H 0.155 0.845 42 H 0.154 0.846 43 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 1.133 -16.373 -8.555 18.508 hybrid contribution -1.029 1.035 1.424 2.039 sum 0.104 -15.339 -7.131 16.915 Atomic orbital electron populations 1.69601 1.05935 1.28304 1.50525 1.25252 0.95623 0.99716 0.97251 0.85925 0.78780 0.80447 0.79131 1.19843 1.20976 1.19906 1.19653 0.93356 0.82229 1.47727 0.87965 1.41851 1.09146 1.04591 1.64382 1.19766 0.88405 0.84641 0.84713 1.90551 1.13674 1.86981 1.55196 1.21763 0.94474 0.91252 1.01076 1.60138 1.18124 0.98828 1.52321 1.21997 0.97374 0.90773 0.93544 0.88733 1.22831 0.87284 0.99820 0.93412 1.86499 1.31155 1.92245 1.27114 1.21224 0.99087 0.95407 0.82900 1.45670 1.49542 1.22789 1.17670 1.17966 0.79050 0.84389 0.84473 1.90818 1.56129 1.22521 1.71945 1.20120 1.03666 0.97254 0.96397 1.21360 0.96888 0.93460 0.95418 1.21227 0.98995 1.00774 0.94593 1.21225 0.94910 0.92615 0.99787 1.21153 1.03880 0.98909 0.94827 1.17726 0.94679 0.81851 0.92265 1.91587 1.87703 1.42571 1.87656 0.91802 0.77518 0.89635 0.93894 0.81435 0.92960 0.93053 0.77247 0.91471 0.90135 0.75539 0.84205 0.84456 0.84574 0.84199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.86 13.05 55.50 0.72 -23.14 16 2 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 3 Si 0.93 20.59 29.55 -169.99 -5.02 15.57 16 4 H -0.27 -6.01 7.11 56.52 0.40 -5.60 16 5 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 6 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 7 C -0.30 -8.13 9.68 -14.94 -0.14 -8.27 16 8 H 0.10 2.92 7.16 -52.48 -0.38 2.54 16 9 N -0.56 -13.62 5.29 -10.96 -0.06 -13.67 16 10 C 0.44 9.79 7.82 -10.99 -0.09 9.70 16 11 O -0.58 -15.19 15.78 5.54 0.09 -15.10 16 12 C 0.05 0.74 5.96 -4.98 -0.03 0.71 16 13 N -0.66 -9.71 5.31 -107.99 -0.57 -10.29 16 14 C 0.07 0.83 2.57 -67.71 -0.17 0.65 16 15 H 0.09 0.89 7.80 -51.93 -0.40 0.48 16 16 C 0.05 0.45 6.72 37.16 0.25 0.70 16 17 O -0.56 -6.02 12.05 -35.23 -0.42 -6.45 16 18 C 0.14 1.73 5.26 -4.04 -0.02 1.71 16 19 N -0.70 -9.23 5.34 -61.30 -0.33 -9.55 16 20 C 0.55 8.40 7.77 -12.40 -0.10 8.31 16 21 O -0.54 -9.91 15.34 5.30 0.08 -9.82 16 22 C -0.17 -2.23 5.88 -104.91 -0.62 -2.84 16 23 C -0.05 -0.56 9.54 -39.19 -0.37 -0.93 16 24 C -0.14 -1.21 10.03 -39.64 -0.40 -1.61 16 25 C -0.07 -0.53 10.04 -39.51 -0.40 -0.93 16 26 C -0.17 -1.60 10.01 -39.56 -0.40 -2.00 16 27 C 0.16 1.99 7.29 -38.96 -0.28 1.71 16 28 F -0.12 -1.76 15.55 2.25 0.04 -1.72 16 29 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 30 H 0.39 9.02 7.90 -40.82 -0.32 8.69 16 31 H 0.09 1.17 8.05 -51.93 -0.42 0.76 16 32 H 0.04 0.61 7.36 -51.93 -0.38 0.23 16 33 H 0.36 6.19 7.64 -39.29 -0.30 5.89 16 34 H 0.05 0.49 7.35 -51.93 -0.38 0.11 16 35 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.38 2.41 9.12 45.56 0.42 2.82 16 37 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.08 1.20 7.39 -51.93 -0.38 0.82 16 39 H 0.41 4.90 6.17 -40.82 -0.25 4.65 16 40 H 0.14 1.34 6.41 -52.48 -0.34 1.00 16 41 H 0.14 0.93 8.06 -52.49 -0.42 0.50 16 42 H 0.14 0.68 8.06 -52.49 -0.42 0.26 16 43 H 0.14 1.00 8.06 -52.49 -0.42 0.58 16 LS Contribution 373.77 15.07 5.63 5.63 Total: -1.00 -34.85 373.77 -7.10 -41.95 By element: Atomic # 1 Polarization: 23.57 SS G_CDS: -4.39 Total: 19.18 kcal Atomic # 6 Polarization: 10.28 SS G_CDS: -2.86 Total: 7.41 kcal Atomic # 7 Polarization: -56.41 SS G_CDS: -0.23 Total: -56.65 kcal Atomic # 8 Polarization: -31.12 SS G_CDS: -0.26 Total: -31.37 kcal Atomic # 9 Polarization: -1.76 SS G_CDS: 0.04 Total: -1.72 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -34.85 -7.10 -41.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331667980.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.620 kcal (2) G-P(sol) polarization free energy of solvation -34.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds