Wall clock time and date at job start Sat Apr 11 2020 05:37:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31418 * 1 3 3 Si 1.86804 * 119.99701 * 2 1 4 4 H 1.48496 * 109.46851 * 240.00371 * 3 2 1 5 5 H 1.48500 * 109.47108 * 0.02562 * 3 2 1 6 6 H 1.48494 * 109.46683 * 120.00514 * 3 2 1 7 7 C 1.38943 * 119.99972 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99729 * 179.97438 * 7 2 1 9 9 N 1.37096 * 120.00312 * 359.97438 * 7 2 1 10 10 C 1.34776 * 120.00022 * 180.02562 * 9 7 2 11 11 O 1.21298 * 120.00216 * 359.97438 * 10 9 7 12 12 C 1.50697 * 120.00072 * 180.02562 * 10 9 7 13 13 N 1.46897 * 109.47379 * 180.02562 * 12 10 9 14 14 C 1.46906 * 111.00234 * 180.02562 * 13 12 10 15 15 H 1.08995 * 109.46937 * 34.99765 * 14 13 12 16 16 C 1.53004 * 109.46842 * 274.99854 * 14 13 12 17 17 O 1.42896 * 109.46849 * 294.99791 * 16 14 13 18 18 C 1.52996 * 109.47311 * 154.99780 * 14 13 12 19 19 N 1.46499 * 109.47351 * 305.00207 * 18 14 13 20 20 C 1.34772 * 120.00369 * 180.02562 * 19 18 14 21 21 O 1.21572 * 120.00081 * 359.97438 * 20 19 18 22 22 C 1.47696 * 120.00302 * 179.97438 * 20 19 18 23 23 C 1.39656 * 120.16419 * 359.97438 * 22 20 19 24 24 C 1.37856 * 119.88078 * 180.02562 * 23 22 20 25 25 C 1.38465 * 120.21422 * 0.02562 * 24 23 22 26 26 C 1.38207 * 120.34023 * 359.97438 * 25 24 23 27 27 C 1.38319 * 120.11424 * 0.02562 * 26 25 24 28 28 F 1.35101 * 120.10795 * 180.02562 * 27 26 25 29 29 H 0.97001 * 120.00291 * 359.97438 * 1 2 3 30 30 H 0.96999 * 119.99936 * 359.97438 * 9 7 2 31 31 H 1.09000 * 109.47343 * 59.99638 * 12 10 9 32 32 H 1.09007 * 109.47071 * 300.00169 * 12 10 9 33 33 H 1.00901 * 111.00099 * 56.04268 * 13 12 10 34 34 H 1.09003 * 109.47065 * 54.99951 * 16 14 13 35 35 H 1.08997 * 109.46979 * 175.00288 * 16 14 13 36 36 H 0.96707 * 113.99637 * 180.02562 * 17 16 14 37 37 H 1.08993 * 109.47243 * 184.99923 * 18 14 13 38 38 H 1.09004 * 109.47425 * 65.00006 * 18 14 13 39 39 H 0.97009 * 119.99695 * 359.97438 * 19 18 14 40 40 H 1.08006 * 120.06057 * 0.04413 * 23 22 20 41 41 H 1.07995 * 119.89426 * 180.27593 * 24 23 22 42 42 H 1.08000 * 119.82778 * 179.97438 * 25 24 23 43 43 H 1.07994 * 119.93912 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1017 1.6965 -1.2125 5 1 1.2831 2.7465 0.0006 6 1 3.1019 1.6964 1.2124 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2032 -0.0010 9 7 1.3235 -2.3906 -0.0005 10 6 1.9974 -3.5578 -0.0005 11 8 3.2104 -3.5578 -0.0010 12 6 1.2440 -4.8629 -0.0011 13 7 2.1986 -5.9794 -0.0004 14 6 1.4983 -7.2708 -0.0015 15 1 0.5858 -7.1887 -0.5919 16 6 1.1432 -7.6596 1.4350 17 8 2.3429 -7.8808 2.1790 18 6 2.4051 -8.3422 -0.6105 19 7 2.8419 -7.9133 -1.9415 20 6 3.6531 -8.7039 -2.6718 21 8 4.0227 -9.7728 -2.2258 22 6 4.0930 -8.2719 -4.0138 23 6 3.6701 -7.0450 -4.5297 24 6 4.0838 -6.6477 -5.7833 25 6 4.9168 -7.4614 -6.5325 26 6 5.3408 -8.6773 -6.0308 27 6 4.9341 -9.0896 -4.7746 28 9 5.3490 -10.2780 -4.2841 29 1 -0.4850 0.8400 0.0004 30 1 0.3535 -2.3906 0.0002 31 1 0.6176 -4.9205 -0.8913 32 1 0.6169 -4.9208 0.8886 33 1 2.8329 -5.9123 0.7814 34 1 0.5713 -6.8555 1.8982 35 1 0.5469 -8.5720 1.4276 36 1 2.1934 -8.1318 3.1009 37 1 1.8552 -9.2795 -0.6931 38 1 3.2762 -8.4871 0.0285 39 1 2.5467 -7.0606 -2.2975 40 1 3.0202 -6.4083 -3.9476 41 1 3.7605 -5.6970 -6.1806 42 1 5.2368 -7.1441 -7.5140 43 1 5.9907 -9.3067 -6.6205 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331667980.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:49 Heat of formation + Delta-G solvation = -165.206783 kcal Electronic energy + Delta-G solvation = -28798.101278 eV Core-core repulsion = 24370.567284 eV Total energy + Delta-G solvation = -4427.533994 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.143 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.92901 -41.13079 -40.22133 -39.36124 -38.73935 -36.47738 -35.93782 -35.02372 -33.24432 -32.64695 -31.47308 -30.97285 -27.83869 -26.98916 -25.65172 -24.71085 -23.50489 -21.92272 -21.50770 -21.09493 -19.90934 -19.27047 -18.46595 -18.09872 -17.88787 -17.42814 -16.90075 -16.84710 -16.56371 -16.48732 -16.21006 -16.10039 -15.83804 -15.53073 -15.33308 -15.14394 -15.05368 -14.51662 -14.30723 -14.12956 -13.95211 -13.53604 -13.33063 -13.24158 -13.01290 -12.98575 -12.88095 -12.59415 -12.40876 -12.36320 -12.23667 -12.11605 -11.47873 -11.08023 -10.92564 -10.31796 -10.29765 -9.99894 -9.98346 -9.75967 -9.34383 -8.44584 -5.92572 -0.32534 0.15833 1.40965 1.43470 1.53470 1.77269 2.09506 2.11927 2.30480 2.68829 2.84984 3.17595 3.23292 3.34703 3.58906 3.66824 3.71924 3.81440 3.99124 4.05175 4.27400 4.29496 4.31877 4.34985 4.45580 4.53989 4.63052 4.65901 4.75133 4.77664 4.96413 5.00658 5.02047 5.21304 5.35971 5.40552 5.43354 5.80696 5.90194 6.11235 6.32809 6.50003 6.63506 6.89095 7.15096 7.16010 7.60280 8.16302 8.72374 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.009958 B = 0.002841 C = 0.002303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2811.024898 B = 9853.963671 C =12152.549078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.010 4.010 3 Si 0.988 3.012 4 H -0.271 1.271 5 H -0.271 1.271 6 H -0.275 1.275 7 C -0.332 4.332 8 H 0.077 0.923 9 N -0.572 5.572 10 C 0.438 3.562 11 O -0.624 6.624 12 C 0.063 3.937 13 N -0.672 5.672 14 C 0.079 3.921 15 H 0.123 0.877 16 C 0.048 3.952 17 O -0.590 6.590 18 C 0.141 3.859 19 N -0.696 5.696 20 C 0.547 3.453 21 O -0.581 6.581 22 C -0.195 4.195 23 C -0.058 4.058 24 C -0.134 4.134 25 C -0.053 4.053 26 C -0.164 4.164 27 C 0.122 3.878 28 F -0.140 7.140 29 H 0.277 0.723 30 H 0.397 0.603 31 H 0.116 0.884 32 H 0.067 0.933 33 H 0.349 0.651 34 H 0.059 0.941 35 H 0.077 0.923 36 H 0.397 0.603 37 H 0.077 0.923 38 H 0.051 0.949 39 H 0.413 0.587 40 H 0.146 0.854 41 H 0.164 0.836 42 H 0.177 0.823 43 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.403 -15.076 -9.196 17.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.210 4.210 3 Si 0.812 3.188 4 H -0.196 1.196 5 H -0.196 1.196 6 H -0.200 1.200 7 C -0.462 4.462 8 H 0.095 0.905 9 N -0.210 5.210 10 C 0.226 3.774 11 O -0.510 6.510 12 C -0.069 4.069 13 N -0.304 5.304 14 C -0.031 4.031 15 H 0.140 0.860 16 C -0.031 4.031 17 O -0.398 6.398 18 C 0.016 3.984 19 N -0.347 5.347 20 C 0.335 3.665 21 O -0.463 6.463 22 C -0.199 4.199 23 C -0.077 4.077 24 C -0.152 4.152 25 C -0.071 4.071 26 C -0.182 4.182 27 C 0.102 3.898 28 F -0.118 7.118 29 H 0.087 0.913 30 H 0.231 0.769 31 H 0.133 0.867 32 H 0.085 0.915 33 H 0.169 0.831 34 H 0.077 0.923 35 H 0.095 0.905 36 H 0.247 0.753 37 H 0.095 0.905 38 H 0.070 0.930 39 H 0.252 0.748 40 H 0.164 0.836 41 H 0.182 0.818 42 H 0.194 0.806 43 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -0.144 -15.532 -10.065 18.508 hybrid contribution -0.622 0.754 1.853 2.095 sum -0.765 -14.778 -8.212 16.923 Atomic orbital electron populations 1.69653 1.06692 1.29273 1.50425 1.25950 0.96481 1.02176 0.96391 0.85060 0.77824 0.77017 0.78900 1.19648 1.19578 1.20012 1.19592 0.92631 0.84137 1.49853 0.90519 1.41899 1.09298 1.04601 1.65171 1.20904 0.88226 0.86184 0.82109 1.90525 1.16028 1.87948 1.56481 1.21642 0.93936 0.87746 1.03564 1.60086 1.18414 1.00043 1.51875 1.22087 0.97436 0.88310 0.95267 0.85963 1.22842 0.87086 1.01245 0.91956 1.86469 1.32232 1.92449 1.28677 1.21217 0.98363 0.96597 0.82188 1.45665 1.48769 1.22628 1.17621 1.18429 0.78723 0.83946 0.85396 1.90777 1.57941 1.24426 1.73161 1.20116 1.05283 0.98747 0.95768 1.21510 0.97139 0.92561 0.96499 1.21627 0.98205 1.01740 0.93615 1.21712 0.93155 0.91240 1.00962 1.21485 1.03500 0.99769 0.93452 1.18202 0.96114 0.81625 0.93903 1.91520 1.88155 1.43938 1.88214 0.91347 0.76913 0.86655 0.91484 0.83144 0.92309 0.90509 0.75283 0.90473 0.93024 0.74840 0.83599 0.81796 0.80582 0.81928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -47.87 13.05 21.66 0.28 -47.59 16 2 C -0.01 -0.52 5.50 84.92 0.47 -0.05 16 3 Si 0.99 41.79 29.55 68.60 2.03 43.82 16 4 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 5 H -0.27 -10.82 7.11 99.48 0.71 -10.11 16 6 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 7 C -0.33 -18.24 9.68 84.04 0.81 -17.43 16 8 H 0.08 4.53 7.16 -2.91 -0.02 4.50 16 9 N -0.57 -27.68 5.29 -306.98 -1.62 -29.31 16 10 C 0.44 19.43 7.82 87.66 0.69 20.11 16 11 O -0.62 -33.27 15.78 -3.08 -0.05 -33.32 16 12 C 0.06 1.86 5.96 85.56 0.51 2.37 16 13 N -0.67 -19.05 5.31 -495.57 -2.63 -21.69 16 14 C 0.08 1.62 2.57 44.91 0.12 1.73 16 15 H 0.12 1.86 7.80 -2.39 -0.02 1.84 16 16 C 0.05 0.82 6.72 71.98 0.48 1.30 16 17 O -0.59 -12.16 12.05 -148.98 -1.80 -13.95 16 18 C 0.14 3.51 5.26 86.38 0.45 3.97 16 19 N -0.70 -18.43 5.34 -466.13 -2.49 -20.92 16 20 C 0.55 17.35 7.77 86.74 0.67 18.02 16 21 O -0.58 -22.87 15.34 -3.94 -0.06 -22.93 16 22 C -0.20 -5.23 5.88 -20.05 -0.12 -5.34 16 23 C -0.06 -1.19 9.54 22.52 0.21 -0.97 16 24 C -0.13 -1.98 10.03 22.23 0.22 -1.76 16 25 C -0.05 -0.67 10.04 22.32 0.22 -0.44 16 26 C -0.16 -2.83 10.01 22.28 0.22 -2.61 16 27 C 0.12 3.20 7.29 22.67 0.17 3.36 16 28 F -0.14 -4.47 15.55 44.97 0.70 -3.77 16 29 H 0.28 13.58 8.31 -92.71 -0.77 12.81 16 30 H 0.40 18.05 7.90 -92.71 -0.73 17.32 16 31 H 0.12 2.77 8.05 -2.39 -0.02 2.75 16 32 H 0.07 1.71 7.36 -2.38 -0.02 1.69 16 33 H 0.35 11.87 7.64 -89.69 -0.69 11.19 16 34 H 0.06 0.94 7.35 -2.39 -0.02 0.92 16 35 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 36 H 0.40 4.67 9.12 -74.05 -0.68 4.00 16 37 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 38 H 0.05 1.61 7.39 -2.39 -0.02 1.59 16 39 H 0.41 9.77 6.17 -92.70 -0.57 9.20 16 40 H 0.15 2.65 6.41 -2.91 -0.02 2.63 16 41 H 0.16 1.57 8.06 -2.91 -0.02 1.54 16 42 H 0.18 0.85 8.06 -2.91 -0.02 0.82 16 43 H 0.16 1.98 8.06 -2.91 -0.02 1.95 16 Total: -1.00 -79.51 373.77 -2.06 -81.57 By element: Atomic # 1 Polarization: 47.38 SS G_CDS: -1.55 Total: 45.82 kcal Atomic # 6 Polarization: 17.13 SS G_CDS: 5.14 Total: 22.26 kcal Atomic # 7 Polarization: -113.04 SS G_CDS: -6.46 Total: -119.50 kcal Atomic # 8 Polarization: -68.30 SS G_CDS: -1.90 Total: -70.20 kcal Atomic # 9 Polarization: -4.47 SS G_CDS: 0.70 Total: -3.77 kcal Atomic # 14 Polarization: 41.79 SS G_CDS: 2.03 Total: 43.82 kcal Total: -79.51 -2.06 -81.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331667980.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.640 kcal (2) G-P(sol) polarization free energy of solvation -79.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds