Wall clock time and date at job start Sat Apr 11 2020 05:37:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38672 * 120.78412 * 2 1 4 4 C 1.38187 * 119.15847 * 179.97438 * 3 2 1 5 5 N 1.31879 * 120.76665 * 0.02562 * 4 3 2 6 6 C 1.31861 * 121.72557 * 359.68244 * 5 4 3 7 7 C 1.38218 * 120.76100 * 0.58201 * 6 5 4 8 8 C 1.50706 * 120.41946 * 179.72815 * 7 6 5 9 9 N 1.46893 * 109.47176 * 259.72496 * 8 7 6 10 10 C 1.46903 * 110.99924 * 179.97438 * 9 8 7 11 11 H 1.08999 * 109.47239 * 34.99837 * 10 9 8 12 12 C 1.52999 * 109.47145 * 274.99722 * 10 9 8 13 13 O 1.42904 * 109.46860 * 295.00097 * 12 10 9 14 14 C 1.53004 * 109.47091 * 154.99688 * 10 9 8 15 15 N 1.46494 * 109.47185 * 304.99959 * 14 10 9 16 16 C 1.34775 * 120.00194 * 179.97438 * 15 14 10 17 17 O 1.21287 * 120.00142 * 0.02562 * 16 15 14 18 18 C 1.50703 * 120.00350 * 180.02562 * 16 15 14 19 19 S 1.81002 * 109.47191 * 180.02562 * 18 16 15 20 20 C 1.76204 * 99.99723 * 179.97438 * 19 18 16 21 21 H 1.08001 * 120.00537 * 0.02562 * 20 19 18 22 22 C 1.38797 * 119.99716 * 179.97438 * 20 19 18 23 23 N 1.31632 * 120.00297 * 359.97438 * 22 20 19 24 24 Si 1.86806 * 120.00067 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.46858 * 359.97438 * 24 22 20 26 26 H 1.48492 * 109.47372 * 119.99627 * 24 22 20 27 27 H 1.48500 * 109.46960 * 239.99853 * 24 22 20 28 28 H 1.08995 * 109.47537 * 270.02144 * 1 2 3 29 29 H 1.08994 * 109.47292 * 30.03211 * 1 2 3 30 30 H 1.09005 * 109.46448 * 150.02455 * 1 2 3 31 31 H 1.07999 * 120.42185 * 359.95667 * 3 2 1 32 32 H 1.08001 * 119.61321 * 179.97438 * 4 3 2 33 33 H 1.08004 * 119.61554 * 180.28900 * 6 5 4 34 34 H 1.09001 * 109.46953 * 19.71956 * 8 7 6 35 35 H 1.09000 * 109.47318 * 139.71554 * 8 7 6 36 36 H 1.00893 * 111.00654 * 56.04333 * 9 8 7 37 37 H 1.09002 * 109.47068 * 55.00000 * 12 10 9 38 38 H 1.08997 * 109.47133 * 175.00261 * 12 10 9 39 39 H 0.96706 * 113.99801 * 179.97438 * 13 12 10 40 40 H 1.09005 * 109.47146 * 64.99936 * 14 10 9 41 41 H 1.08997 * 109.46945 * 184.99909 * 14 10 9 42 42 H 0.97000 * 120.00051 * 0.02562 * 15 14 10 43 43 H 1.09005 * 109.46958 * 300.00272 * 18 16 15 44 44 H 1.08996 * 109.47368 * 59.99751 * 18 16 15 45 45 H 0.97004 * 120.00263 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2168 1.1913 0.0000 4 6 3.5981 1.1521 0.0005 5 7 4.2403 0.0003 0.0005 6 6 3.5983 -1.1515 0.0063 7 6 2.2167 -1.1908 0.0004 8 6 1.4909 -2.5116 0.0009 9 7 1.0445 -2.8254 -1.3629 10 6 0.3318 -4.1094 -1.4012 11 1 -0.2360 -4.2375 -0.4796 12 6 1.3424 -5.2497 -1.5402 13 8 2.0053 -5.1475 -2.8020 14 6 -0.6241 -4.1268 -2.5957 15 7 -1.5151 -2.9661 -2.5250 16 6 -2.4471 -2.7728 -3.4792 17 8 -2.5485 -3.5601 -4.3962 18 6 -3.3633 -1.5785 -3.4068 19 16 -4.4943 -1.5991 -4.8199 20 6 -5.4215 -0.1374 -4.4909 21 1 -5.1989 0.4585 -3.6181 22 6 -6.4375 0.2489 -5.3541 23 7 -6.7080 -0.4764 -6.4187 24 14 -7.4202 1.7990 -5.0058 25 1 -6.9228 2.4302 -3.7570 26 1 -7.2645 2.7484 -6.1368 27 1 -8.8548 1.4502 -4.8462 28 1 -0.3634 0.0004 1.0276 29 1 -0.3633 0.8896 -0.5143 30 1 -0.3632 -0.8903 -0.5135 31 1 1.6966 2.1378 -0.0007 32 1 4.1582 2.0756 0.0001 33 1 4.1587 -2.0748 0.0108 34 1 2.1623 -3.2950 0.3526 35 1 0.6261 -2.4507 0.6614 36 1 1.8210 -2.8240 -2.0071 37 1 2.0769 -5.1840 -0.7375 38 1 0.8223 -6.2056 -1.4794 39 1 2.6621 -5.8398 -2.9585 40 1 -0.0497 -4.0880 -3.5214 41 1 -1.2165 -5.0414 -2.5737 42 1 -1.4338 -2.3362 -1.7919 43 1 -3.9380 -1.6170 -2.4813 44 1 -2.7707 -0.6640 -3.4286 45 1 -7.4178 -0.2063 -7.0222 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331680323.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:56 Heat of formation + Delta-G solvation = -86.997850 kcal Electronic energy + Delta-G solvation = -26557.726293 eV Core-core repulsion = 22699.796868 eV Total energy + Delta-G solvation = -3857.929424 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.28093 -40.57605 -39.04154 -36.64855 -35.58053 -34.56770 -34.49025 -32.85807 -31.21988 -29.80130 -28.67538 -27.67808 -26.36578 -26.00412 -23.48456 -22.24815 -21.91208 -21.55712 -19.78297 -18.53743 -17.76155 -17.63523 -17.47408 -17.24261 -16.86257 -16.65801 -16.35667 -16.11714 -15.81800 -15.60563 -15.21043 -14.93229 -14.69508 -14.49195 -14.32514 -14.26929 -13.74685 -13.66418 -13.50612 -13.36509 -13.21694 -13.13352 -12.93091 -12.87198 -12.64775 -12.52081 -12.26664 -12.09452 -11.68432 -11.13933 -10.96998 -10.85100 -10.35367 -10.29671 -10.23448 -9.99641 -9.92589 -9.36284 -8.63801 -8.32516 -6.10171 0.17609 0.36652 1.30020 1.42834 1.49900 1.60837 1.71031 2.28775 2.39449 2.77587 3.01583 3.17664 3.36888 3.50189 3.60679 3.83403 3.85995 3.90852 3.97711 4.01571 4.13804 4.17622 4.33353 4.40443 4.47543 4.54519 4.57377 4.62422 4.66534 4.71338 4.81040 4.82761 4.85526 4.95879 5.03876 5.16126 5.31473 5.44250 5.51215 5.56591 5.83618 6.02235 6.22373 6.36132 6.65654 6.90612 7.06252 7.08784 7.37020 8.77015 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010645 B = 0.002713 C = 0.002238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2629.789408 B =10318.440832 C =12509.939529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.026 4.026 3 C -0.185 4.185 4 C 0.086 3.914 5 N -0.521 5.521 6 C 0.095 3.905 7 C -0.142 4.142 8 C 0.108 3.892 9 N -0.682 5.682 10 C 0.087 3.913 11 H 0.119 0.881 12 C 0.050 3.950 13 O -0.590 6.590 14 C 0.137 3.863 15 N -0.696 5.696 16 C 0.529 3.471 17 O -0.573 6.573 18 C -0.126 4.126 19 S -0.154 6.154 20 C -0.543 4.543 21 H 0.083 0.917 22 C 0.012 3.988 23 N -0.912 5.912 24 Si 0.999 3.001 25 H -0.255 1.255 26 H -0.275 1.275 27 H -0.274 1.274 28 H 0.088 0.912 29 H 0.069 0.931 30 H 0.085 0.915 31 H 0.149 0.851 32 H 0.170 0.830 33 H 0.165 0.835 34 H 0.059 0.941 35 H 0.096 0.904 36 H 0.350 0.650 37 H 0.071 0.929 38 H 0.063 0.937 39 H 0.397 0.603 40 H 0.049 0.951 41 H 0.060 0.940 42 H 0.415 0.585 43 H 0.110 0.890 44 H 0.105 0.895 45 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.655 -4.090 21.127 30.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.034 4.034 3 C -0.204 4.204 4 C -0.070 4.070 5 N -0.230 5.230 6 C -0.062 4.062 7 C -0.144 4.144 8 C -0.021 4.021 9 N -0.314 5.314 10 C -0.023 4.023 11 H 0.137 0.863 12 C -0.030 4.030 13 O -0.398 6.398 14 C 0.013 3.987 15 N -0.350 5.350 16 C 0.314 3.686 17 O -0.452 6.452 18 C -0.277 4.277 19 S 0.073 5.927 20 C -0.691 4.691 21 H 0.101 0.899 22 C -0.193 4.193 23 N -0.549 5.549 24 Si 0.821 3.179 25 H -0.179 1.179 26 H -0.201 1.201 27 H -0.199 1.199 28 H 0.106 0.894 29 H 0.088 0.912 30 H 0.104 0.896 31 H 0.167 0.833 32 H 0.187 0.813 33 H 0.182 0.818 34 H 0.077 0.923 35 H 0.114 0.886 36 H 0.169 0.831 37 H 0.089 0.911 38 H 0.081 0.919 39 H 0.247 0.753 40 H 0.068 0.932 41 H 0.078 0.922 42 H 0.252 0.748 43 H 0.128 0.872 44 H 0.123 0.877 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 21.369 -4.542 19.483 29.272 hybrid contribution -0.207 0.863 1.049 1.374 sum 21.162 -3.680 20.533 29.715 Atomic orbital electron populations 1.20946 0.89154 1.04309 1.03434 1.20505 0.97754 0.92450 0.92729 1.22346 0.95605 0.99740 1.02743 1.23084 0.92464 0.96583 0.94862 1.67677 1.42173 0.99331 1.13837 1.22965 0.91670 0.96481 0.95062 1.20791 0.94516 0.96199 1.02905 1.20842 0.98998 0.91672 0.90585 1.60419 1.32305 1.31106 1.07523 1.21929 0.93902 0.88040 0.98419 0.86312 1.22817 0.95303 0.98748 0.86094 1.86472 1.58958 1.56943 1.37440 1.21220 0.90579 0.87668 0.99255 1.45545 1.33809 1.28528 1.27068 1.20083 0.80918 0.85759 0.81819 1.90684 1.71476 1.47464 1.35611 1.23342 1.00376 0.99776 1.04239 1.85607 1.39602 1.35692 1.31827 1.23235 1.21202 1.10834 1.13800 0.89868 1.26145 0.97650 1.01462 0.94035 1.70201 1.30988 1.40051 1.13681 0.84896 0.77499 0.76697 0.78791 1.17874 1.20056 1.19938 0.89387 0.91233 0.89622 0.83334 0.81316 0.81756 0.92318 0.88594 0.83085 0.91100 0.91914 0.75281 0.93236 0.92155 0.74767 0.87202 0.87650 0.92057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.57 9.36 71.24 0.67 -0.90 16 2 C -0.03 -0.40 5.92 -19.67 -0.12 -0.52 16 3 C -0.18 -2.87 9.82 22.36 0.22 -2.65 16 4 C 0.09 1.46 11.18 84.67 0.95 2.41 16 5 N -0.52 -10.35 10.36 -195.84 -2.03 -12.38 16 6 C 0.10 1.53 10.83 84.68 0.92 2.45 16 7 C -0.14 -2.00 5.41 -19.77 -0.11 -2.11 16 8 C 0.11 1.01 4.78 85.56 0.41 1.42 16 9 N -0.68 -8.74 5.12 -495.57 -2.54 -11.28 16 10 C 0.09 1.07 2.57 44.92 0.12 1.19 16 11 H 0.12 0.96 7.80 -2.39 -0.02 0.95 16 12 C 0.05 0.46 6.72 71.98 0.48 0.94 16 13 O -0.59 -7.76 12.05 -148.98 -1.80 -9.55 16 14 C 0.14 3.10 5.26 86.38 0.45 3.56 16 15 N -0.70 -18.07 5.39 -463.06 -2.49 -20.56 16 16 C 0.53 20.19 7.85 87.66 0.69 20.88 16 17 O -0.57 -27.64 15.86 -3.05 -0.05 -27.69 16 18 C -0.13 -5.10 6.16 71.24 0.44 -4.66 16 19 S -0.15 -8.73 20.57 -56.49 -1.16 -9.89 16 20 C -0.54 -31.21 9.50 67.95 0.65 -30.57 16 21 H 0.08 4.43 7.80 -2.91 -0.02 4.41 16 22 C 0.01 0.66 5.49 84.86 0.47 1.13 16 23 N -0.91 -56.61 13.22 21.65 0.29 -56.32 16 24 Si 1.00 43.78 29.55 68.60 2.03 45.80 16 25 H -0.26 -10.37 7.11 99.48 0.71 -9.66 16 26 H -0.28 -11.73 7.11 99.48 0.71 -11.03 16 27 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 28 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.07 0.95 8.10 -2.39 -0.02 0.93 16 30 H 0.09 1.12 5.82 -2.38 -0.01 1.10 16 31 H 0.15 1.75 8.06 -2.91 -0.02 1.73 16 32 H 0.17 2.06 8.06 -2.91 -0.02 2.03 16 33 H 0.17 1.89 8.04 -2.91 -0.02 1.86 16 34 H 0.06 0.36 7.24 -2.39 -0.02 0.34 16 35 H 0.10 0.72 7.30 -2.39 -0.02 0.70 16 36 H 0.35 5.62 7.93 -89.70 -0.71 4.90 16 37 H 0.07 0.35 7.35 -2.39 -0.02 0.34 16 38 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 39 H 0.40 2.01 9.12 -74.05 -0.68 1.34 16 40 H 0.05 1.43 7.39 -2.38 -0.02 1.41 16 41 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 42 H 0.41 8.27 7.41 -92.71 -0.69 7.58 16 43 H 0.11 3.93 8.14 -2.39 -0.02 3.91 16 44 H 0.11 3.90 8.14 -2.40 -0.02 3.88 16 45 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 Total: -1.00 -83.42 390.72 -2.56 -85.99 By element: Atomic # 1 Polarization: 24.36 SS G_CDS: -1.04 Total: 23.32 kcal Atomic # 6 Polarization: -13.67 SS G_CDS: 6.23 Total: -7.44 kcal Atomic # 7 Polarization: -93.76 SS G_CDS: -6.78 Total: -100.54 kcal Atomic # 8 Polarization: -35.40 SS G_CDS: -1.84 Total: -37.25 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.80 kcal Atomic # 16 Polarization: -8.73 SS G_CDS: -1.16 Total: -9.89 kcal Total: -83.42 -2.56 -85.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331680323.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.012 kcal (2) G-P(sol) polarization free energy of solvation -83.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds