Wall clock time and date at job start Sat Apr 11 2020 05:38:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.34650 * 125.80378 * 2 1 4 4 H 0.97001 * 124.85288 * 0.02562 * 3 2 1 5 5 C 1.36445 * 110.29791 * 180.29498 * 3 2 1 6 6 C 1.34485 * 108.85598 * 359.74928 * 5 3 2 7 7 C 1.36769 * 125.79671 * 179.86874 * 2 1 3 8 8 C 1.47263 * 126.94634 * 359.97438 * 7 2 1 9 9 O 1.21630 * 119.99864 * 34.80261 * 8 7 2 10 10 N 1.34770 * 120.00140 * 214.81017 * 8 7 2 11 11 C 1.46500 * 120.00039 * 355.57232 * 10 8 7 12 12 C 1.46506 * 120.00109 * 175.57598 * 10 8 7 13 13 C 1.53003 * 109.46978 * 89.99877 * 12 10 8 14 14 H 1.09000 * 109.46802 * 295.00093 * 13 12 10 15 15 C 1.52991 * 109.47213 * 175.00191 * 13 12 10 16 16 N 1.46504 * 109.47125 * 54.99617 * 13 12 10 17 17 C 1.34772 * 119.99870 * 204.99785 * 16 13 12 18 18 O 1.21283 * 120.00118 * 0.02562 * 17 16 13 19 19 C 1.50705 * 119.99720 * 180.02562 * 17 16 13 20 20 S 1.81005 * 109.46867 * 180.02562 * 19 17 16 21 21 C 1.76200 * 99.99593 * 179.97438 * 20 19 17 22 22 H 1.07994 * 120.00302 * 359.97438 * 21 20 19 23 23 C 1.38808 * 119.99696 * 179.97438 * 21 20 19 24 24 N 1.31623 * 119.99703 * 0.02562 * 23 21 20 25 25 Si 1.86797 * 119.99906 * 179.97438 * 23 21 20 26 26 H 1.48505 * 109.46776 * 90.00053 * 25 23 21 27 27 H 1.48494 * 109.47257 * 210.00006 * 25 23 21 28 28 H 1.48499 * 109.47041 * 330.00391 * 25 23 21 29 29 H 1.09001 * 109.47286 * 270.13789 * 1 2 3 30 30 H 1.09001 * 109.47204 * 30.13255 * 1 2 3 31 31 H 1.08994 * 109.47682 * 150.13179 * 1 2 3 32 32 H 1.08010 * 125.57406 * 179.76955 * 5 3 2 33 33 H 1.07999 * 126.83408 * 180.02562 * 6 5 3 34 34 H 1.09001 * 109.47504 * 275.38628 * 11 10 8 35 35 H 1.09002 * 109.47323 * 35.39315 * 11 10 8 36 36 H 1.09002 * 109.47315 * 155.38903 * 11 10 8 37 37 H 1.08991 * 109.47047 * 330.00003 * 12 10 8 38 38 H 1.09000 * 109.47372 * 209.99652 * 12 10 8 39 39 H 1.09006 * 109.47366 * 59.99652 * 15 13 12 40 40 H 1.09002 * 109.47723 * 180.02562 * 15 13 12 41 41 H 1.09000 * 109.47157 * 299.99684 * 15 13 12 42 42 H 0.96998 * 120.00039 * 25.01003 * 16 13 12 43 43 H 1.08996 * 109.46710 * 299.99987 * 19 17 16 44 44 H 1.08999 * 109.46974 * 60.00203 * 19 17 16 45 45 H 0.97006 * 119.99837 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2947 1.0920 0.0000 4 1 1.9734 2.0073 0.0004 5 6 3.6095 0.7273 -0.0066 6 6 3.6881 -0.6153 -0.0054 7 6 2.3070 -1.1093 0.0025 8 6 1.8701 -2.5157 0.0063 9 8 0.8635 -2.8414 -0.5937 10 7 2.5856 -3.4418 0.6747 11 6 3.8488 -3.0689 1.3160 12 6 2.1001 -4.8214 0.7598 13 6 2.6425 -5.6268 -0.4227 14 1 2.2292 -5.2324 -1.3509 15 6 2.2392 -7.0945 -0.2679 16 7 4.1034 -5.5225 -0.4554 17 6 4.7652 -5.6928 -1.6171 18 8 4.1513 -5.9318 -2.6354 19 6 6.2681 -5.5860 -1.6506 20 16 6.8549 -5.8612 -3.3407 21 6 8.5905 -5.6834 -3.0947 22 1 8.9770 -5.4674 -2.1096 23 6 9.4611 -5.8208 -4.1670 24 7 8.9900 -6.0835 -5.3676 25 14 11.3011 -5.6316 -3.9064 26 1 11.8928 -6.9532 -3.5769 27 1 11.9252 -5.1052 -5.1467 28 1 11.5480 -4.6861 -2.7882 29 1 -0.3634 0.0025 1.0277 30 1 -0.3633 0.8888 -0.5159 31 1 -0.3634 -0.8911 -0.5117 32 1 4.4498 1.4059 -0.0116 33 1 4.5888 -1.2111 -0.0091 34 1 4.6556 -3.1164 0.5846 35 1 3.7722 -2.0544 1.7072 36 1 4.0587 -3.7586 2.1336 37 1 1.0105 -4.8255 0.7328 38 1 2.4421 -5.2701 1.6924 39 1 1.1522 -7.1720 -0.2435 40 1 2.6260 -7.6684 -1.1100 41 1 2.6525 -7.4889 0.6604 42 1 4.5944 -5.3311 0.3589 43 1 6.5692 -4.5923 -1.3191 44 1 6.7005 -6.3364 -0.9888 45 1 9.5984 -6.1792 -6.1171 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001337107831.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:14 Heat of formation + Delta-G solvation = -26.600865 kcal Electronic energy + Delta-G solvation = -27173.969755 eV Core-core repulsion = 23318.659340 eV Total energy + Delta-G solvation = -3855.310415 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.49506 -39.81353 -38.79476 -36.28465 -34.43358 -32.40214 -31.82432 -31.79615 -30.98419 -28.55503 -27.47620 -27.06756 -25.65263 -25.44717 -22.53640 -21.34466 -20.92146 -20.16523 -18.69750 -17.85889 -17.78128 -16.50886 -16.40858 -16.14679 -15.89226 -15.00233 -14.83447 -14.77908 -14.61662 -14.14074 -14.00932 -13.90315 -13.33317 -13.16493 -13.04781 -13.02865 -12.87211 -12.83052 -12.68226 -12.51237 -12.33966 -11.94696 -11.90663 -11.79221 -11.69109 -11.05195 -11.02524 -10.98788 -10.74040 -9.89945 -9.78558 -9.28230 -9.04682 -8.97296 -8.94839 -8.60322 -8.33793 -8.18281 -6.45791 -6.18706 -3.88670 1.66404 2.26997 2.78253 3.07427 3.14808 3.22061 3.23926 3.26882 3.29894 3.35202 3.79956 4.23088 4.58386 4.60064 4.77315 4.83691 4.96106 4.98782 5.07421 5.16185 5.21887 5.25010 5.30839 5.34930 5.41689 5.49628 5.54773 5.59723 5.67866 5.69527 5.72340 5.77009 5.93398 5.94442 6.16491 6.17091 6.22178 6.46067 6.56729 6.72882 6.78605 7.20468 7.34101 7.61894 7.81718 8.23330 8.37777 8.74132 9.26322 10.88686 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011872 B = 0.002910 C = 0.002514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2357.911265 B = 9620.752847 C =11137.148994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.095 3.905 3 N -0.553 5.553 4 H 0.415 0.585 5 C -0.018 4.018 6 C -0.165 4.165 7 C -0.230 4.230 8 C 0.596 3.404 9 O -0.544 6.544 10 N -0.608 5.608 11 C 0.074 3.926 12 C 0.113 3.887 13 C 0.126 3.874 14 H 0.093 0.907 15 C -0.160 4.160 16 N -0.731 5.731 17 C 0.532 3.468 18 O -0.515 6.515 19 C -0.152 4.152 20 S -0.059 6.059 21 C -0.535 4.535 22 H 0.072 0.928 23 C 0.073 3.927 24 N -0.867 5.867 25 Si 0.918 3.082 26 H -0.277 1.277 27 H -0.282 1.282 28 H -0.272 1.272 29 H 0.073 0.927 30 H 0.066 0.934 31 H 0.100 0.900 32 H 0.170 0.830 33 H 0.149 0.851 34 H 0.059 0.941 35 H 0.081 0.919 36 H 0.068 0.932 37 H 0.096 0.904 38 H 0.081 0.919 39 H 0.064 0.936 40 H 0.067 0.933 41 H 0.055 0.945 42 H 0.392 0.608 43 H 0.087 0.913 44 H 0.088 0.912 45 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.470 12.666 19.678 27.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.023 4.023 3 N -0.149 5.149 4 H 0.251 0.749 5 C -0.145 4.145 6 C -0.189 4.189 7 C -0.240 4.240 8 C 0.386 3.614 9 O -0.423 6.423 10 N -0.341 5.341 11 C -0.069 4.069 12 C -0.011 4.011 13 C 0.020 3.980 14 H 0.111 0.889 15 C -0.219 4.219 16 N -0.385 5.385 17 C 0.318 3.682 18 O -0.389 6.389 19 C -0.303 4.303 20 S 0.167 5.833 21 C -0.683 4.683 22 H 0.090 0.910 23 C -0.136 4.136 24 N -0.503 5.503 25 Si 0.745 3.255 26 H -0.203 1.203 27 H -0.208 1.208 28 H -0.197 1.197 29 H 0.092 0.908 30 H 0.085 0.915 31 H 0.119 0.881 32 H 0.187 0.813 33 H 0.167 0.833 34 H 0.078 0.922 35 H 0.099 0.901 36 H 0.087 0.913 37 H 0.114 0.886 38 H 0.099 0.901 39 H 0.083 0.917 40 H 0.086 0.914 41 H 0.074 0.926 42 H 0.226 0.774 43 H 0.105 0.895 44 H 0.106 0.894 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -16.004 12.190 17.470 26.644 hybrid contribution 2.383 0.918 1.708 3.072 sum -13.622 13.108 19.178 26.929 Atomic orbital electron populations 1.20563 0.87326 1.04697 1.03006 1.20210 0.93499 0.85678 1.02888 1.41566 1.06286 1.08287 1.58751 0.74910 1.21772 0.85592 0.96543 1.10607 1.22241 0.95843 0.93548 1.07273 1.20033 0.93555 0.91836 1.18562 1.17419 0.82319 0.84192 0.77475 1.90747 1.26718 1.81584 1.43207 1.47519 1.23296 1.09008 1.54245 1.22107 0.85358 1.02094 0.97327 1.21831 1.00978 0.80500 0.97774 1.21323 0.80938 0.95402 1.00341 0.88875 1.22120 1.01418 0.95889 1.02519 1.46044 1.06662 1.74984 1.10818 1.20269 0.89447 0.75633 0.82898 1.90706 1.69172 1.46058 1.32980 1.23523 0.93799 1.04700 1.08245 1.85451 1.04491 1.93025 1.00313 1.22866 0.91548 1.56280 0.97609 0.90998 1.24992 0.99533 0.94647 0.94452 1.70022 1.35428 1.45291 0.99523 0.86178 0.83061 0.78480 0.77829 1.20304 1.20792 1.19714 0.90850 0.91514 0.88090 0.81279 0.83303 0.92245 0.90094 0.91332 0.88598 0.90101 0.91724 0.91404 0.92594 0.77388 0.89498 0.89405 0.92217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.81 10.21 36.01 0.37 -0.44 16 2 C 0.09 0.95 7.17 -81.89 -0.59 0.36 16 3 N -0.55 -4.12 5.90 -9.11 -0.05 -4.17 16 4 H 0.41 1.68 8.96 -40.82 -0.37 1.31 16 5 C -0.02 -0.15 11.89 -16.83 -0.20 -0.35 16 6 C -0.17 -1.72 8.74 -37.50 -0.33 -2.05 16 7 C -0.23 -2.79 5.53 -103.35 -0.57 -3.36 16 8 C 0.60 8.24 7.48 -12.60 -0.09 8.14 16 9 O -0.54 -9.10 15.04 5.25 0.08 -9.02 16 10 N -0.61 -6.72 2.73 -182.91 -0.50 -7.22 16 11 C 0.07 0.61 7.63 59.85 0.46 1.06 16 12 C 0.11 1.14 5.04 -4.04 -0.02 1.12 16 13 C 0.13 1.65 2.88 -67.93 -0.20 1.46 16 14 H 0.09 1.61 7.58 -51.93 -0.39 1.22 16 15 C -0.16 -1.87 9.48 37.15 0.35 -1.51 16 16 N -0.73 -10.10 4.42 -53.80 -0.24 -10.34 16 17 C 0.53 10.25 7.81 -10.98 -0.09 10.17 16 18 O -0.52 -12.28 15.52 5.56 0.09 -12.19 16 19 C -0.15 -3.10 6.16 36.01 0.22 -2.88 16 20 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 21 C -0.53 -15.30 9.50 30.94 0.29 -15.01 16 22 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 23 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 24 N -0.87 -26.42 13.22 55.49 0.73 -25.68 16 25 Si 0.92 21.46 29.55 -169.99 -5.02 16.43 16 26 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 27 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 28 H -0.27 -6.15 7.11 56.52 0.40 -5.74 16 29 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.10 1.08 6.53 -51.93 -0.34 0.74 16 32 H 0.17 0.89 8.06 -52.48 -0.42 0.46 16 33 H 0.15 1.45 6.34 -52.49 -0.33 1.12 16 34 H 0.06 0.53 6.93 -51.93 -0.36 0.17 16 35 H 0.08 0.62 5.81 -51.93 -0.30 0.32 16 36 H 0.07 0.39 7.83 -51.93 -0.41 -0.02 16 37 H 0.10 1.01 7.49 -51.93 -0.39 0.62 16 38 H 0.08 0.58 7.86 -51.93 -0.41 0.17 16 39 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 40 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 41 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 42 H 0.39 4.18 7.19 -40.82 -0.29 3.88 16 43 H 0.09 1.62 8.14 -51.92 -0.42 1.20 16 44 H 0.09 1.64 8.14 -51.92 -0.42 1.22 16 45 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 386.97 15.07 5.83 5.83 Total: -1.00 -38.85 386.97 -8.30 -47.15 By element: Atomic # 1 Polarization: 10.86 SS G_CDS: -6.52 Total: 4.35 kcal Atomic # 6 Polarization: -0.81 SS G_CDS: -0.49 Total: -1.29 kcal Atomic # 7 Polarization: -47.35 SS G_CDS: -0.06 Total: -47.41 kcal Atomic # 8 Polarization: -21.37 SS G_CDS: 0.17 Total: -21.21 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.43 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -38.85 -8.30 -47.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001337107831.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.551 kcal (2) G-P(sol) polarization free energy of solvation -38.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds