Wall clock time and date at job start Sat Apr 11 2020 05:38:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99718 * 2 1 4 4 H 1.48499 * 109.47489 * 270.00067 * 3 2 1 5 5 H 1.48501 * 109.46989 * 30.00474 * 3 2 1 6 6 H 1.48501 * 109.47070 * 150.00210 * 3 2 1 7 7 C 1.37876 * 120.00411 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99893 * 359.97438 * 7 2 1 9 9 C 1.50700 * 120.00285 * 180.02562 * 7 2 1 10 10 C 1.52995 * 109.47073 * 179.97438 * 9 7 2 11 11 C 1.53009 * 109.46990 * 179.97438 * 10 9 7 12 12 S 1.81397 * 109.47235 * 179.97438 * 11 10 9 13 13 O 1.42105 * 110.54275 * 68.37271 * 12 11 10 14 14 O 1.42101 * 110.54298 * 291.62373 * 12 11 10 15 15 N 1.65599 * 104.44825 * 179.97438 * 12 11 10 16 16 C 1.46925 * 120.62740 * 90.00349 * 15 12 11 17 17 C 1.53191 * 108.77612 * 126.36792 * 16 15 12 18 18 C 1.53041 * 109.31215 * 54.63216 * 17 16 15 19 19 C 1.53036 * 109.53735 * 298.63309 * 18 17 16 20 20 H 1.09007 * 109.50277 * 301.38339 * 19 18 17 21 21 C 1.50703 * 109.49763 * 181.31824 * 19 18 17 22 22 N 1.31791 * 119.12323 * 299.72820 * 21 19 18 23 23 C 1.32338 * 120.81907 * 179.76009 * 22 21 19 24 24 C 1.38595 * 119.10233 * 0.50527 * 23 22 21 25 25 C 1.38598 * 118.39997 * 359.75202 * 24 23 22 26 26 N 1.31797 * 119.12128 * 120.00094 * 21 19 18 27 27 C 1.46925 * 120.63178 * 269.71919 * 15 12 11 28 28 H 0.96996 * 120.00603 * 359.97438 * 1 2 3 29 29 H 1.08995 * 109.47240 * 59.99562 * 9 7 2 30 30 H 1.09000 * 109.46699 * 299.99500 * 9 7 2 31 31 H 1.08995 * 109.47375 * 59.99731 * 10 9 7 32 32 H 1.09000 * 109.47020 * 299.99390 * 10 9 7 33 33 H 1.09004 * 109.47149 * 59.99749 * 11 10 9 34 34 H 1.09000 * 109.46805 * 299.99601 * 11 10 9 35 35 H 1.09000 * 109.58418 * 246.15218 * 16 15 12 36 36 H 1.08991 * 109.58923 * 6.43517 * 16 15 12 37 37 H 1.08997 * 109.49812 * 174.58242 * 17 16 15 38 38 H 1.08999 * 109.49510 * 294.67916 * 17 16 15 39 39 H 1.08996 * 109.46306 * 58.65978 * 18 17 16 40 40 H 1.09000 * 109.46022 * 178.63174 * 18 17 16 41 41 H 1.08001 * 120.44419 * 180.28386 * 23 22 21 42 42 H 1.08001 * 120.79870 * 179.76816 * 24 23 22 43 43 H 1.08002 * 120.44403 * 180.02562 * 25 24 23 44 44 H 1.09002 * 109.58276 * 353.42079 * 27 15 12 45 45 H 1.08993 * 109.58751 * 113.84646 * 27 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0466 -1.4000 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4647 -2.1293 -0.0005 9 6 3.5116 -1.1940 0.0000 10 6 4.0216 -2.6364 -0.0001 11 6 5.5517 -2.6363 -0.0001 12 16 6.1565 -4.3465 0.0005 13 8 5.8603 -4.9806 -1.2363 14 8 5.8604 -4.9797 1.2377 15 7 7.8061 -4.2015 -0.0003 16 6 8.5523 -4.1353 1.2636 17 6 9.6421 -5.2119 1.2497 18 6 10.5073 -5.0401 -0.0009 19 6 9.6410 -5.2137 -1.2504 20 1 9.1781 -6.2005 -1.2381 21 6 10.5000 -5.0764 -2.4810 22 7 11.1466 -3.9471 -2.6893 23 6 11.9139 -3.7919 -3.7563 24 6 12.0234 -4.8327 -4.6650 25 6 11.3242 -6.0029 -4.4144 26 7 10.5803 -6.0871 -3.3232 27 6 8.5518 -4.1427 -1.2649 28 1 -0.4851 0.8400 0.0004 29 1 3.8746 -0.6807 0.8904 30 1 3.8752 -0.6796 -0.8895 31 1 3.6586 -3.1501 -0.8902 32 1 3.6580 -3.1504 0.8897 33 1 5.9151 -2.1225 0.8899 34 1 5.9149 -2.1225 -0.8901 35 1 9.0114 -3.1520 1.3658 36 1 7.8736 -4.3102 2.0982 37 1 10.2641 -5.1113 2.1391 38 1 9.1787 -6.1984 1.2389 39 1 10.9507 -4.0444 -0.0018 40 1 11.2985 -5.7898 -0.0008 41 1 12.4446 -2.8654 -3.9186 42 1 12.6389 -4.7343 -5.5469 43 1 11.3861 -6.8349 -5.1002 44 1 7.8730 -4.3250 -2.0981 45 1 9.0108 -3.1601 -1.3731 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001350082281.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:20 Heat of formation + Delta-G solvation = -61.065423 kcal Electronic energy + Delta-G solvation = -27202.378369 eV Core-core repulsion = 23345.573459 eV Total energy + Delta-G solvation = -3856.804910 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.08627 -39.46685 -38.30007 -37.07708 -36.52090 -34.69166 -34.57093 -34.26016 -32.97450 -31.17179 -30.16603 -25.92921 -25.75886 -25.42813 -25.17014 -23.24479 -22.22095 -21.39375 -19.82789 -18.97338 -18.84601 -18.37868 -17.86552 -17.33364 -17.24980 -16.26753 -16.24566 -16.16595 -15.88297 -15.49884 -15.42033 -15.08423 -14.90372 -14.59387 -14.55464 -14.29144 -14.05964 -13.69907 -13.67655 -13.25931 -13.22723 -13.12350 -13.01962 -12.71168 -12.57027 -12.38696 -12.05261 -11.97258 -11.85518 -11.78932 -11.66602 -11.62658 -11.51657 -11.42479 -11.24420 -10.78408 -10.47147 -10.19737 -9.92904 -8.30654 -6.36859 -0.82663 -0.05881 0.18574 1.36320 1.38972 1.50779 1.60936 2.35853 2.76286 2.79591 2.84307 3.04290 3.12546 3.23924 3.52693 3.74928 3.79711 3.84836 3.89675 3.95485 4.15881 4.18646 4.24415 4.28378 4.32135 4.38456 4.53213 4.57168 4.60039 4.78269 4.82571 4.83147 4.88828 4.93034 4.96906 5.09219 5.10743 5.20100 5.31729 5.41573 5.43884 5.48591 5.59933 5.61307 6.09407 6.24220 6.71185 7.13969 7.27770 8.86373 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.015248 B = 0.002618 C = 0.002439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1835.904086 B =10690.707007 C =11476.097109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.000 4.000 3 Si 0.956 3.044 4 H -0.265 1.265 5 H -0.284 1.284 6 H -0.238 1.238 7 C -0.545 4.545 8 H 0.029 0.971 9 C -0.004 4.004 10 C -0.104 4.104 11 C -0.607 4.607 12 S 2.613 3.387 13 O -0.991 6.991 14 O -0.983 6.983 15 N -0.994 5.994 16 C 0.105 3.895 17 C -0.128 4.128 18 C -0.094 4.094 19 C -0.033 4.033 20 H 0.081 0.919 21 C 0.310 3.690 22 N -0.526 5.526 23 C 0.138 3.862 24 C -0.219 4.219 25 C 0.132 3.868 26 N -0.549 5.549 27 C 0.132 3.868 28 H 0.267 0.733 29 H 0.034 0.966 30 H 0.030 0.970 31 H 0.060 0.940 32 H 0.063 0.937 33 H 0.158 0.842 34 H 0.152 0.848 35 H 0.100 0.900 36 H 0.093 0.907 37 H 0.105 0.895 38 H 0.056 0.944 39 H 0.085 0.915 40 H 0.064 0.936 41 H 0.201 0.799 42 H 0.185 0.815 43 H 0.193 0.807 44 H 0.076 0.924 45 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 34.228 -7.113 -5.414 35.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.196 4.196 3 Si 0.778 3.222 4 H -0.190 1.190 5 H -0.210 1.210 6 H -0.161 1.161 7 C -0.583 4.583 8 H 0.047 0.953 9 C -0.043 4.043 10 C -0.143 4.143 11 C -0.738 4.738 12 S 2.711 3.289 13 O -0.982 6.982 14 O -0.973 6.973 15 N -0.832 5.832 16 C -0.019 4.019 17 C -0.167 4.167 18 C -0.132 4.132 19 C -0.055 4.055 20 H 0.100 0.900 21 C 0.041 3.959 22 N -0.240 5.240 23 C -0.027 4.027 24 C -0.240 4.240 25 C -0.032 4.032 26 N -0.264 5.264 27 C 0.005 3.995 28 H 0.076 0.924 29 H 0.052 0.948 30 H 0.048 0.952 31 H 0.078 0.922 32 H 0.082 0.918 33 H 0.176 0.824 34 H 0.170 0.830 35 H 0.118 0.882 36 H 0.112 0.888 37 H 0.123 0.877 38 H 0.075 0.925 39 H 0.104 0.896 40 H 0.083 0.917 41 H 0.218 0.782 42 H 0.202 0.798 43 H 0.210 0.790 44 H 0.095 0.905 45 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 33.046 -7.947 -4.605 34.298 hybrid contribution -0.066 0.970 -1.024 1.412 sum 32.980 -6.977 -5.629 34.176 Atomic orbital electron populations 1.70082 1.08527 1.28353 1.52299 1.26125 0.95721 1.03934 0.93843 0.85581 0.79728 0.77510 0.79378 1.19000 1.21024 1.16065 1.21551 0.92338 0.93298 1.51101 0.95265 1.19500 0.93707 0.93331 0.97757 1.21191 0.90502 1.00571 1.02067 1.30545 1.05334 1.24005 1.13914 1.04719 0.73268 0.78022 0.72907 1.93523 1.83793 1.74218 1.46638 1.93524 1.83652 1.74019 1.46139 1.57543 1.23108 1.89992 1.12601 1.21814 0.95018 1.01299 0.83754 1.21876 0.97141 0.98847 0.98811 1.21416 0.96836 1.03418 0.91575 1.20197 0.94230 1.00548 0.90523 0.90035 1.22916 0.93119 0.85259 0.94588 1.68206 1.08896 1.24264 1.22641 1.23934 0.91219 1.00031 0.87518 1.23322 1.02438 0.94918 1.03327 1.23847 0.88483 0.98566 0.92313 1.68264 1.20256 1.32418 1.05425 1.21314 0.93581 0.99925 0.84649 0.92395 0.94767 0.95164 0.92156 0.91789 0.82441 0.83036 0.88193 0.88831 0.87657 0.92496 0.89622 0.91710 0.78246 0.79791 0.79008 0.90527 0.88381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.60 13.96 21.45 0.30 -60.30 16 2 C 0.00 0.03 5.47 84.65 0.46 0.49 16 3 Si 0.96 43.51 27.47 68.60 1.88 45.39 16 4 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 5 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 6 H -0.24 -9.68 6.54 99.48 0.65 -9.03 16 7 C -0.54 -32.01 9.66 25.60 0.25 -31.77 16 8 H 0.03 1.90 7.99 -2.91 -0.02 1.88 16 9 C 0.00 -0.20 4.04 29.85 0.12 -0.08 16 10 C -0.10 -4.10 5.16 30.60 0.16 -3.94 16 11 C -0.61 -16.72 6.18 71.99 0.44 -16.28 16 12 S 2.61 76.46 5.45 -56.49 -0.31 76.15 16 13 O -0.99 -35.85 16.58 -127.65 -2.12 -37.97 16 14 O -0.98 -33.86 16.59 -127.65 -2.12 -35.97 16 15 N -0.99 -21.45 3.23 -513.87 -1.66 -23.11 16 16 C 0.11 1.71 6.43 86.36 0.56 2.27 16 17 C -0.13 -1.85 6.08 30.67 0.19 -1.66 16 18 C -0.09 -1.44 5.05 30.62 0.15 -1.28 16 19 C -0.03 -0.67 2.66 -11.61 -0.03 -0.70 16 20 H 0.08 1.94 8.10 -2.38 -0.02 1.92 16 21 C 0.31 6.31 6.34 138.75 0.88 7.19 16 22 N -0.53 -9.01 9.74 -187.84 -1.83 -10.84 16 23 C 0.14 1.47 11.31 84.70 0.96 2.42 16 24 C -0.22 -1.77 10.17 22.44 0.23 -1.54 16 25 C 0.13 1.71 11.30 84.70 0.96 2.67 16 26 N -0.55 -11.43 10.31 -187.84 -1.94 -13.36 16 27 C 0.13 2.75 5.63 86.22 0.49 3.24 16 28 H 0.27 15.76 8.31 -92.71 -0.77 14.99 16 29 H 0.03 1.48 7.20 -2.39 -0.02 1.46 16 30 H 0.03 1.30 7.57 -2.39 -0.02 1.28 16 31 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 32 H 0.06 2.57 8.14 -2.39 -0.02 2.55 16 33 H 0.16 3.43 8.14 -2.39 -0.02 3.42 16 34 H 0.15 3.47 8.14 -2.39 -0.02 3.45 16 35 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.09 1.63 6.86 -2.39 -0.02 1.62 16 37 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 38 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.09 1.19 8.05 -2.39 -0.02 1.17 16 40 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 41 H 0.20 0.65 8.06 -2.91 -0.02 0.63 16 42 H 0.18 0.04 8.06 -2.91 -0.02 0.02 16 43 H 0.19 1.23 8.06 -2.91 -0.02 1.21 16 44 H 0.08 1.87 6.85 -2.39 -0.02 1.85 16 45 H 0.10 1.71 7.86 -2.39 -0.02 1.69 16 Total: -1.00 -84.31 377.67 -1.05 -85.37 By element: Atomic # 1 Polarization: 12.70 SS G_CDS: 0.92 Total: 13.62 kcal Atomic # 6 Polarization: -44.79 SS G_CDS: 5.81 Total: -38.98 kcal Atomic # 7 Polarization: -102.49 SS G_CDS: -5.12 Total: -107.61 kcal Atomic # 8 Polarization: -69.71 SS G_CDS: -4.23 Total: -73.94 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 1.88 Total: 45.39 kcal Atomic # 16 Polarization: 76.46 SS G_CDS: -0.31 Total: 76.15 kcal Total: -84.31 -1.05 -85.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350082281.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.302 kcal (2) G-P(sol) polarization free energy of solvation -84.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds