Wall clock time and date at job start Sat Apr 11 2020 05:38:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86799 * 120.00172 * 2 1 4 4 H 1.48501 * 109.47118 * 0.02562 * 3 2 1 5 5 H 1.48499 * 109.46887 * 120.00128 * 3 2 1 6 6 H 1.48495 * 109.47443 * 240.00498 * 3 2 1 7 7 C 1.37875 * 119.99896 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00139 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00311 * 359.97438 * 7 2 1 10 10 O 1.42905 * 112.94467 * 50.33388 * 9 7 2 11 11 C 1.53945 * 113.74222 * 278.74474 * 9 7 2 12 12 N 1.47809 * 86.03872 * 222.08203 * 11 9 7 13 13 C 1.34779 * 134.45764 * 204.64355 * 12 11 9 14 14 O 1.21642 * 120.00070 * 174.45243 * 13 12 11 15 15 C 1.47143 * 120.00118 * 354.45176 * 13 12 11 16 16 C 1.36798 * 120.83613 * 335.48774 * 15 13 12 17 17 N 1.34568 * 120.54484 * 179.68999 * 16 15 13 18 18 H 0.96996 * 118.79573 * 180.28332 * 17 16 15 19 19 C 1.36110 * 122.41732 * 0.62479 * 17 16 15 20 20 C 1.34617 * 121.66170 * 359.66462 * 19 17 16 21 21 C 1.42191 * 119.19410 * 0.02562 * 20 19 17 22 22 N 1.32726 * 121.07572 * 180.02562 * 21 20 19 23 23 C 1.36445 * 119.99812 * 5.06107 * 22 21 20 24 24 C 1.39832 * 120.16857 * 264.76782 * 23 22 21 25 25 C 1.37890 * 119.82600 * 179.74910 * 24 23 22 26 26 C 1.38403 * 120.17087 * 0.52411 * 25 24 23 27 27 C 1.38405 * 120.34150 * 359.75015 * 26 25 24 28 28 C 1.37890 * 120.17108 * 359.96987 * 27 26 25 29 29 C 1.47581 * 91.04942 * 24.54770 * 12 11 9 30 30 H 0.96998 * 120.00237 * 359.97438 * 1 2 3 31 31 H 0.96705 * 113.99439 * 309.66655 * 10 9 7 32 32 H 1.09002 * 113.77286 * 336.34666 * 11 9 7 33 33 H 1.09006 * 113.77114 * 107.74152 * 11 9 7 34 34 H 1.08012 * 119.72598 * 359.97329 * 16 15 13 35 35 H 1.07991 * 119.16856 * 179.68321 * 19 17 16 36 36 H 1.08003 * 120.39907 * 180.02562 * 20 19 17 37 37 H 1.08005 * 120.08797 * 359.97438 * 24 23 22 38 38 H 1.07998 * 119.91709 * 180.27497 * 25 24 23 39 39 H 1.07994 * 119.82886 * 179.72398 * 26 25 24 40 40 H 1.07999 * 119.91084 * 180.02562 * 27 26 25 41 41 H 1.08003 * 120.08328 * 180.02562 * 28 27 26 42 42 H 1.09004 * 113.76779 * 221.15334 * 29 12 11 43 43 H 1.08997 * 113.87051 * 89.77226 * 29 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 0.0006 5 1 3.1029 1.6963 1.2125 6 1 3.1028 1.6965 -1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 8 0.2446 -2.5614 -1.0132 11 6 0.7561 -2.9291 1.3923 12 7 1.1919 -4.2900 1.0142 13 6 0.8426 -5.5338 1.3982 14 8 1.3136 -6.5006 0.8297 15 6 -0.1084 -5.7223 2.5050 16 6 -0.2706 -4.7584 3.4620 17 7 -1.1465 -4.9343 4.4683 18 1 -1.2442 -4.2326 5.1308 19 6 -1.8957 -6.0636 4.5945 20 6 -1.8065 -7.0734 3.7088 21 6 -0.9066 -6.9581 2.6139 22 7 -0.7890 -7.9307 1.7184 23 6 -1.6108 -9.0182 1.7805 24 6 -1.1907 -10.1800 2.4353 25 6 -2.0289 -11.2731 2.4982 26 6 -3.2790 -11.2260 1.9061 27 6 -3.6997 -10.0816 1.2512 28 6 -2.8752 -8.9784 1.1847 29 6 2.1608 -3.7401 0.0463 30 1 -0.4850 0.8400 0.0004 31 1 -0.3475 -1.7970 -1.0267 32 1 1.3273 -2.4974 2.2142 33 1 -0.3215 -2.8326 1.5249 34 1 0.3060 -3.8467 3.4070 35 1 -2.5792 -6.1516 5.4260 36 1 -2.4110 -7.9604 3.8285 37 1 -0.2136 -10.2200 2.8937 38 1 -1.7077 -12.1697 3.0074 39 1 -3.9293 -12.0868 1.9549 40 1 -4.6768 -10.0523 0.7919 41 1 -3.2052 -8.0859 0.6737 42 1 2.2026 -4.2899 -0.8940 43 1 3.1462 -3.5467 0.4700 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001362625382.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:46 Heat of formation + Delta-G solvation = 22.217150 kcal Electronic energy + Delta-G solvation = -28561.824160 eV Core-core repulsion = 24573.186702 eV Total energy + Delta-G solvation = -3988.637458 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.77273 -40.72805 -40.00642 -38.74985 -36.69745 -35.74748 -34.12049 -33.17394 -32.51118 -31.79345 -30.24961 -29.24867 -27.17953 -27.03579 -25.07561 -24.44171 -23.36619 -22.04792 -21.81794 -20.79408 -19.44980 -18.95513 -18.48878 -18.24008 -17.22668 -17.11137 -16.81257 -16.54436 -16.19722 -15.97738 -15.94181 -15.53063 -15.25104 -15.19741 -14.78110 -14.31471 -14.30860 -14.25897 -13.84966 -13.68299 -13.56442 -13.38130 -13.00842 -12.76308 -12.73876 -12.60166 -12.44056 -12.22636 -12.17624 -11.68922 -11.41837 -11.12041 -10.79775 -10.68712 -10.58119 -10.17829 -9.88831 -9.47177 -8.81399 -8.42549 -8.22183 -6.39245 -0.00700 0.28834 0.48680 0.51260 1.50225 1.54133 1.60031 1.89814 1.93414 2.06190 2.43843 2.68652 2.86157 3.00397 3.34833 3.55274 3.77370 3.84337 4.07333 4.08462 4.09271 4.15164 4.23635 4.29018 4.39148 4.57067 4.59423 4.66049 4.67101 4.74339 4.80445 4.92734 4.93554 4.99187 5.16553 5.18933 5.29544 5.48475 5.57916 5.63422 5.73048 5.76171 5.77695 5.98398 6.11028 6.30078 6.66104 6.95326 7.32898 7.36735 7.43354 7.49209 8.83191 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.020105 B = 0.002709 C = 0.002601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1392.376056 B =10331.679424 C =10763.119545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.037 3.963 3 Si 0.966 3.034 4 H -0.284 1.284 5 H -0.263 1.263 6 H -0.282 1.282 7 C -0.554 4.554 8 H 0.071 0.929 9 C 0.219 3.781 10 O -0.591 6.591 11 C 0.091 3.909 12 N -0.639 5.639 13 C 0.578 3.422 14 O -0.583 6.583 15 C -0.255 4.255 16 C 0.204 3.796 17 N -0.565 5.565 18 H 0.450 0.550 19 C 0.168 3.832 20 C -0.272 4.272 21 C 0.277 3.723 22 N -0.598 5.598 23 C 0.122 3.878 24 C -0.175 4.175 25 C -0.092 4.092 26 C -0.155 4.155 27 C -0.093 4.093 28 C -0.179 4.179 29 C 0.110 3.890 30 H 0.275 0.725 31 H 0.387 0.613 32 H 0.110 0.890 33 H 0.072 0.928 34 H 0.193 0.807 35 H 0.228 0.772 36 H 0.145 0.855 37 H 0.103 0.897 38 H 0.146 0.854 39 H 0.152 0.848 40 H 0.143 0.857 41 H 0.098 0.902 42 H 0.044 0.956 43 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.309 -7.652 18.113 21.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.164 4.164 3 Si 0.791 3.209 4 H -0.209 1.209 5 H -0.188 1.188 6 H -0.208 1.208 7 C -0.592 4.592 8 H 0.089 0.911 9 C 0.178 3.822 10 O -0.402 6.402 11 C -0.031 4.031 12 N -0.373 5.373 13 C 0.370 3.630 14 O -0.464 6.464 15 C -0.268 4.268 16 C 0.069 3.931 17 N -0.171 5.171 18 H 0.292 0.708 19 C 0.039 3.961 20 C -0.299 4.299 21 C 0.108 3.892 22 N -0.310 5.310 23 C 0.021 3.979 24 C -0.195 4.195 25 C -0.111 4.111 26 C -0.173 4.173 27 C -0.112 4.112 28 C -0.200 4.200 29 C -0.013 4.013 30 H 0.085 0.915 31 H 0.241 0.759 32 H 0.128 0.872 33 H 0.090 0.910 34 H 0.209 0.791 35 H 0.245 0.755 36 H 0.163 0.837 37 H 0.122 0.878 38 H 0.164 0.836 39 H 0.169 0.831 40 H 0.161 0.839 41 H 0.116 0.884 42 H 0.062 0.938 43 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -8.513 -9.125 16.952 21.051 hybrid contribution 0.052 1.374 -0.172 1.386 sum -8.461 -7.752 16.780 20.329 Atomic orbital electron populations 1.69459 1.06960 1.28886 1.50100 1.25679 0.95726 1.02261 0.92735 0.85489 0.78289 0.78268 0.78835 1.20889 1.18795 1.20760 1.21663 0.94076 0.90602 1.52836 0.91083 1.20144 0.85764 0.91506 0.84817 1.86101 1.47628 1.49623 1.56897 1.24220 1.00141 0.77114 1.01590 1.50132 1.40507 1.04683 1.41999 1.17809 0.81245 0.80956 0.82986 1.90742 1.57486 1.40435 1.57703 1.19925 1.08257 0.97316 1.01299 1.22204 0.88495 0.97060 0.85314 1.41052 1.32697 1.18986 1.24372 0.70846 1.22385 0.91673 0.83547 0.98454 1.21632 1.06461 1.03421 0.98409 1.20209 0.89707 0.89435 0.89803 1.68931 1.27631 1.04631 1.29771 1.19161 0.90299 0.93711 0.94743 1.21352 1.00539 0.94556 1.03086 1.21269 0.93924 0.97489 0.98390 1.21381 0.96950 0.98817 1.00181 1.21249 0.99646 0.92367 0.97915 1.21387 0.93814 1.00121 1.04700 1.23438 0.94359 0.92088 0.91385 0.91488 0.75950 0.87226 0.91007 0.79058 0.75522 0.83745 0.87847 0.83597 0.83063 0.83879 0.88385 0.93786 0.87587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -43.53 11.20 21.45 0.24 -43.29 16 2 C 0.04 1.72 5.39 84.65 0.46 2.18 16 3 Si 0.97 37.42 29.54 68.60 2.03 39.45 16 4 H -0.28 -10.83 7.11 99.48 0.71 -10.12 16 5 H -0.26 -9.69 7.11 99.48 0.71 -8.98 16 6 H -0.28 -11.26 7.11 99.48 0.71 -10.55 16 7 C -0.55 -26.44 8.61 25.60 0.22 -26.22 16 8 H 0.07 3.31 7.81 -2.91 -0.02 3.29 16 9 C 0.22 10.28 1.40 -10.88 -0.02 10.26 16 10 O -0.59 -31.29 13.49 -148.98 -2.01 -33.30 16 11 C 0.09 3.50 5.70 86.44 0.49 3.99 16 12 N -0.64 -27.40 3.58 -843.82 -3.02 -30.42 16 13 C 0.58 26.44 7.79 86.58 0.67 27.12 16 14 O -0.58 -32.52 16.50 -4.16 -0.07 -32.58 16 15 C -0.26 -8.98 5.96 -18.83 -0.11 -9.09 16 16 C 0.20 4.35 10.00 83.94 0.84 5.19 16 17 N -0.57 -5.73 5.19 -194.76 -1.01 -6.74 16 18 H 0.45 -0.03 8.88 -92.71 -0.82 -0.86 16 19 C 0.17 1.83 11.11 83.20 0.92 2.75 16 20 C -0.27 -6.35 9.26 22.42 0.21 -6.14 16 21 C 0.28 9.97 6.79 42.44 0.29 10.25 16 22 N -0.60 -26.30 9.04 -176.72 -1.60 -27.90 16 23 C 0.12 4.59 4.17 39.20 0.16 4.75 16 24 C -0.17 -5.66 10.00 22.57 0.23 -5.43 16 25 C -0.09 -2.25 10.03 22.23 0.22 -2.02 16 26 C -0.15 -3.38 10.04 22.35 0.22 -3.15 16 27 C -0.09 -2.35 10.03 22.23 0.22 -2.13 16 28 C -0.18 -5.98 10.00 22.57 0.23 -5.76 16 29 C 0.11 4.96 8.23 86.48 0.71 5.67 16 30 H 0.28 12.47 8.31 -92.71 -0.77 11.70 16 31 H 0.39 20.31 6.60 -74.05 -0.49 19.82 16 32 H 0.11 3.53 7.74 -2.39 -0.02 3.52 16 33 H 0.07 2.69 7.87 -2.38 -0.02 2.67 16 34 H 0.19 3.48 5.54 -2.90 -0.02 3.46 16 35 H 0.23 -0.30 8.06 -2.92 -0.02 -0.33 16 36 H 0.14 3.32 7.09 -2.91 -0.02 3.30 16 37 H 0.10 3.47 8.06 -2.91 -0.02 3.45 16 38 H 0.15 2.59 8.06 -2.91 -0.02 2.56 16 39 H 0.15 2.20 8.06 -2.91 -0.02 2.17 16 40 H 0.14 2.73 8.06 -2.91 -0.02 2.71 16 41 H 0.10 3.48 8.06 -2.91 -0.02 3.46 16 42 H 0.04 2.17 8.14 -2.39 -0.02 2.15 16 43 H 0.11 4.23 8.09 -2.39 -0.02 4.21 16 Total: -1.00 -85.24 368.78 0.30 -84.95 By element: Atomic # 1 Polarization: 37.86 SS G_CDS: -0.24 Total: 37.63 kcal Atomic # 6 Polarization: 6.24 SS G_CDS: 5.97 Total: 12.22 kcal Atomic # 7 Polarization: -102.96 SS G_CDS: -5.39 Total: -108.35 kcal Atomic # 8 Polarization: -63.81 SS G_CDS: -2.08 Total: -65.89 kcal Atomic # 14 Polarization: 37.42 SS G_CDS: 2.03 Total: 39.45 kcal Total: -85.24 0.30 -84.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362625382.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.165 kcal (2) G-P(sol) polarization free energy of solvation -85.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.948 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds