Wall clock time and date at job start Sat Apr 11 2020 05:39:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86798 * 120.00148 * 2 1 4 4 H 1.48500 * 109.47207 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46953 * 299.99772 * 3 2 1 6 6 H 1.48501 * 109.47349 * 59.99860 * 3 2 1 7 7 C 1.37880 * 119.99872 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99884 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99817 * 0.02562 * 7 2 1 10 10 C 1.50702 * 109.46813 * 179.97438 * 9 7 2 11 11 C 1.38284 * 119.92800 * 89.99805 * 10 9 7 12 12 C 1.38117 * 120.06829 * 179.97438 * 11 10 9 13 13 C 1.38873 * 119.92657 * 0.03018 * 12 11 10 14 14 N 1.39929 * 120.06498 * 179.97438 * 13 12 11 15 15 C 1.34779 * 120.00204 * 35.08581 * 14 13 12 16 16 O 1.21287 * 119.99955 * 355.37470 * 15 14 13 17 17 C 1.50700 * 119.99969 * 175.37390 * 15 14 13 18 18 N 1.46496 * 109.47262 * 179.97438 * 17 15 14 19 19 C 1.34775 * 120.00374 * 180.02562 * 18 17 15 20 20 O 1.21518 * 119.99774 * 359.97438 * 19 18 17 21 21 C 1.48167 * 120.00252 * 180.02562 * 19 18 17 22 22 C 1.39308 * 119.72606 * 179.97438 * 21 19 18 23 23 C 1.38587 * 119.06112 * 180.02562 * 22 21 19 24 24 C 1.38626 * 118.48889 * 0.02562 * 23 22 21 25 25 C 1.38558 * 119.35254 * 0.27367 * 24 23 22 26 26 N 1.31525 * 120.90082 * 359.45162 * 25 24 23 27 27 C 1.38867 * 119.86089 * 0.24559 * 13 12 11 28 28 C 1.38108 * 119.92833 * 359.47295 * 27 13 12 29 29 H 0.97005 * 120.00006 * 0.02562 * 1 2 3 30 30 H 1.08991 * 109.47198 * 60.00134 * 9 7 2 31 31 H 1.08999 * 109.47095 * 299.99422 * 9 7 2 32 32 H 1.07995 * 119.96629 * 0.02562 * 11 10 9 33 33 H 1.07999 * 120.03321 * 180.02562 * 12 11 10 34 34 H 0.97002 * 119.99523 * 215.07709 * 14 13 12 35 35 H 1.09001 * 109.47321 * 59.99708 * 17 15 14 36 36 H 1.08998 * 109.46980 * 300.00124 * 17 15 14 37 37 H 0.97009 * 119.99485 * 359.97438 * 18 17 15 38 38 H 1.07997 * 120.46618 * 0.02562 * 22 21 19 39 39 H 1.08002 * 120.75426 * 180.02562 * 23 22 21 40 40 H 1.07992 * 120.32574 * 180.02562 * 24 23 22 41 41 H 1.07997 * 119.54964 * 179.72190 * 25 24 23 42 42 H 1.08008 * 120.03307 * 179.74838 * 27 13 12 43 43 H 1.07998 * 119.96449 * 180.27006 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2302 -3.6446 0.0005 11 6 2.6786 -4.1690 1.1990 12 6 3.5757 -5.2191 1.2024 13 6 4.0278 -5.7479 0.0005 14 7 4.9371 -6.8115 0.0005 15 6 4.8651 -7.7597 0.9556 16 8 4.0674 -7.6477 1.8624 17 6 5.7756 -8.9591 0.8969 18 7 5.5041 -9.8349 2.0394 19 6 6.2040 -10.9760 2.1952 20 8 7.0600 -11.2788 1.3876 21 6 5.9289 -11.8621 3.3505 22 6 6.6554 -13.0405 3.5056 23 6 6.3864 -13.8593 4.5909 24 6 5.3993 -13.4711 5.4835 25 6 4.7118 -12.2883 5.2636 26 7 4.9910 -11.5273 4.2278 27 6 3.5800 -5.2153 -1.2012 28 6 2.6785 -4.1691 -1.1978 29 1 -0.4850 0.8401 -0.0004 30 1 0.6246 -2.5571 -0.8896 31 1 0.6240 -2.5567 0.8903 32 1 2.3262 -3.7575 2.1332 33 1 3.9251 -5.6285 2.1387 34 1 5.6193 -6.8663 -0.6869 35 1 6.8139 -8.6291 0.9312 36 1 5.5983 -9.5048 -0.0299 37 1 4.8209 -9.5929 2.6843 38 1 7.4174 -13.3122 2.7902 39 1 6.9333 -14.7789 4.7379 40 1 5.1657 -14.0864 6.3396 41 1 3.9391 -11.9851 5.9544 42 1 3.9330 -5.6218 -2.1376 43 1 2.3265 -3.7573 -2.1321 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001412872639.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:19 Heat of formation + Delta-G solvation = -8.548112 kcal Electronic energy + Delta-G solvation = -26547.664303 eV Core-core repulsion = 22557.692763 eV Total energy + Delta-G solvation = -3989.971540 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.10905 -40.48401 -39.24372 -38.19622 -35.21094 -34.75282 -33.13947 -33.01072 -31.97643 -30.72568 -30.33407 -28.58649 -26.44202 -24.80947 -23.94975 -23.21521 -22.42390 -21.24097 -20.89599 -20.13605 -19.00209 -17.62490 -17.28149 -16.70295 -16.42577 -16.30879 -16.29126 -15.71293 -15.36037 -15.29976 -14.96017 -14.43077 -14.33460 -14.22027 -13.87320 -13.74726 -13.48315 -13.07473 -12.95902 -12.81832 -12.55613 -12.48937 -12.02805 -11.42505 -11.30861 -10.88536 -10.79200 -10.61904 -10.49988 -10.42291 -10.16603 -10.02358 -9.90148 -9.77338 -9.49974 -9.45567 -9.29106 -8.43302 -8.32231 -7.45930 -6.04325 -4.08385 0.15262 0.70316 1.75490 2.02877 2.29947 2.38425 2.54934 3.12361 3.29131 3.36842 3.40861 3.41721 3.68282 4.25494 4.30539 4.34389 4.41326 4.47500 4.53293 4.55494 4.86725 4.92289 4.96854 5.20856 5.29789 5.39494 5.45441 5.54250 5.57438 5.83898 5.89581 6.00658 6.04666 6.07751 6.16757 6.61575 6.71214 6.82875 7.00176 7.13549 7.17884 7.32003 7.37037 7.50267 7.66456 7.75457 7.84881 7.91529 7.97520 8.31621 8.97218 9.55512 11.05324 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.025009 B = 0.001683 C = 0.001624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.323174 B =16628.504791 C =17233.197295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.895 3.105 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.511 4.511 8 H 0.058 0.942 9 C 0.046 3.954 10 C -0.039 4.039 11 C -0.110 4.110 12 C -0.115 4.115 13 C 0.098 3.902 14 N -0.660 5.660 15 C 0.504 3.496 16 O -0.515 6.515 17 C 0.100 3.900 18 N -0.697 5.697 19 C 0.575 3.425 20 O -0.535 6.535 21 C 0.078 3.922 22 C -0.111 4.111 23 C -0.083 4.083 24 C -0.149 4.149 25 C 0.100 3.900 26 N -0.456 5.456 27 C -0.139 4.139 28 C -0.109 4.109 29 H 0.261 0.739 30 H 0.029 0.971 31 H 0.029 0.971 32 H 0.122 0.878 33 H 0.129 0.871 34 H 0.409 0.591 35 H 0.104 0.896 36 H 0.105 0.895 37 H 0.425 0.575 38 H 0.149 0.851 39 H 0.143 0.857 40 H 0.142 0.858 41 H 0.166 0.834 42 H 0.115 0.885 43 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.516 -28.041 6.652 31.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.144 4.144 3 Si 0.723 3.277 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.209 1.209 7 C -0.549 4.549 8 H 0.076 0.924 9 C 0.010 3.990 10 C -0.040 4.040 11 C -0.129 4.129 12 C -0.135 4.135 13 C 0.006 3.994 14 N -0.305 5.305 15 C 0.290 3.710 16 O -0.390 6.390 17 C -0.027 4.027 18 N -0.352 5.352 19 C 0.360 3.640 20 O -0.412 6.412 21 C -0.060 4.060 22 C -0.132 4.132 23 C -0.109 4.109 24 C -0.169 4.169 25 C -0.059 4.059 26 N -0.167 5.167 27 C -0.159 4.159 28 C -0.128 4.128 29 H 0.071 0.929 30 H 0.047 0.953 31 H 0.048 0.952 32 H 0.140 0.860 33 H 0.146 0.854 34 H 0.244 0.756 35 H 0.122 0.878 36 H 0.122 0.878 37 H 0.265 0.735 38 H 0.167 0.833 39 H 0.161 0.839 40 H 0.160 0.840 41 H 0.183 0.817 42 H 0.133 0.867 43 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 12.959 -27.281 6.561 30.907 hybrid contribution 0.901 0.261 0.078 0.941 sum 13.860 -27.020 6.640 31.084 Atomic orbital electron populations 1.69967 1.06034 1.26705 1.50556 1.25016 0.94880 0.99264 0.95204 0.86484 0.80128 0.83505 0.77617 1.19683 1.20959 1.20947 1.21102 0.93091 0.89843 1.50898 0.92387 1.18372 0.92593 0.89601 0.98469 1.20751 0.96210 0.95105 0.91884 1.21029 0.97598 0.95657 0.98567 1.21122 0.99159 0.96291 0.96900 1.17505 0.96405 0.91014 0.94518 1.43193 1.33465 1.23397 1.30481 1.20509 0.84301 0.83750 0.82462 1.90744 1.37684 1.77142 1.33460 1.21096 0.99863 0.90199 0.91564 1.45539 1.40624 1.21212 1.27867 1.17832 0.81151 0.80688 0.84325 1.90798 1.33025 1.73588 1.43739 1.21027 0.95080 0.94719 0.95169 1.22140 0.99325 0.93435 0.98260 1.21664 0.96486 0.99495 0.93207 1.22444 0.96288 0.97951 1.00231 1.22878 0.98168 0.90751 0.94133 1.67593 1.13988 1.32519 1.02615 1.20758 1.00066 0.99592 0.95525 1.20893 0.97401 0.95905 0.98599 0.92895 0.95263 0.95232 0.86014 0.85359 0.75581 0.87827 0.87759 0.73511 0.83295 0.83901 0.84017 0.81731 0.86674 0.85919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.35 13.29 55.43 0.74 -25.61 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.48 29.54 -169.99 -5.02 16.46 16 4 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 7 C -0.51 -14.25 9.09 -34.44 -0.31 -14.57 16 8 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 9 C 0.05 1.19 5.10 -29.03 -0.15 1.05 16 10 C -0.04 -0.85 5.07 -104.59 -0.53 -1.38 16 11 C -0.11 -2.21 9.69 -39.61 -0.38 -2.60 16 12 C -0.11 -2.07 8.70 -39.39 -0.34 -2.41 16 13 C 0.10 1.54 6.30 -83.69 -0.53 1.01 16 14 N -0.66 -7.59 5.34 -9.86 -0.05 -7.65 16 15 C 0.50 6.03 7.74 -10.98 -0.09 5.94 16 16 O -0.52 -8.06 13.10 5.55 0.07 -7.99 16 17 C 0.10 0.91 6.16 -5.20 -0.03 0.88 16 18 N -0.70 -7.47 5.52 -62.33 -0.34 -7.81 16 19 C 0.58 6.44 7.81 -12.18 -0.10 6.35 16 20 O -0.54 -6.89 16.32 5.35 0.09 -6.80 16 21 C 0.08 0.77 6.75 -83.01 -0.56 0.21 16 22 C -0.11 -0.84 9.63 -39.05 -0.38 -1.21 16 23 C -0.08 -0.42 10.17 -39.31 -0.40 -0.82 16 24 C -0.15 -0.70 10.11 -39.32 -0.40 -1.10 16 25 C 0.10 0.66 11.18 -17.56 -0.20 0.47 16 26 N -0.46 -4.37 9.54 -9.80 -0.09 -4.46 16 27 C -0.14 -2.20 9.97 -39.40 -0.39 -2.59 16 28 C -0.11 -2.07 9.69 -39.61 -0.38 -2.45 16 29 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 30 H 0.03 0.78 8.08 -51.93 -0.42 0.36 16 31 H 0.03 0.80 8.08 -51.93 -0.42 0.38 16 32 H 0.12 2.41 8.06 -52.49 -0.42 1.99 16 33 H 0.13 2.28 6.22 -52.49 -0.33 1.95 16 34 H 0.41 3.14 8.82 -40.82 -0.36 2.78 16 35 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.42 4.92 6.77 -40.82 -0.28 4.64 16 38 H 0.15 1.02 7.64 -52.49 -0.40 0.62 16 39 H 0.14 0.32 8.06 -52.49 -0.42 -0.11 16 40 H 0.14 0.25 8.06 -52.49 -0.42 -0.18 16 41 H 0.17 0.67 8.06 -52.49 -0.42 0.25 16 42 H 0.12 1.43 8.06 -52.48 -0.42 1.00 16 43 H 0.12 2.22 8.06 -52.49 -0.42 1.80 16 LS Contribution 378.89 15.07 5.71 5.71 Total: -1.00 -34.91 378.89 -9.29 -44.20 By element: Atomic # 1 Polarization: 10.78 SS G_CDS: -5.13 Total: 5.66 kcal Atomic # 6 Polarization: -6.43 SS G_CDS: -5.26 Total: -11.69 kcal Atomic # 7 Polarization: -45.79 SS G_CDS: 0.25 Total: -45.54 kcal Atomic # 8 Polarization: -14.96 SS G_CDS: 0.16 Total: -14.80 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -34.91 -9.29 -44.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001412872639.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.653 kcal (2) G-P(sol) polarization free energy of solvation -34.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds