Wall clock time and date at job start Sat Apr 11 2020 05:39:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30746 * 1 3 3 Si 1.86803 * 119.99652 * 2 1 4 4 H 1.48503 * 109.47115 * 269.99814 * 3 2 1 5 5 H 1.48504 * 109.47416 * 30.00154 * 3 2 1 6 6 H 1.48498 * 109.47009 * 150.00000 * 3 2 1 7 7 C 1.40019 * 120.00398 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00315 * 179.97438 * 7 2 1 9 9 C 1.41335 * 119.99939 * 0.02562 * 7 2 1 10 10 C 1.40605 * 119.79312 * 179.97438 * 9 7 2 11 11 C 1.38304 * 119.13400 * 179.97438 * 10 9 7 12 12 C 1.38687 * 118.67025 * 359.72819 * 11 10 9 13 13 C 1.39647 * 119.49536 * 0.55407 * 12 11 10 14 14 N 1.39251 * 119.57440 * 179.71194 * 13 12 11 15 15 C 1.34775 * 119.99726 * 185.40515 * 14 13 12 16 16 O 1.21576 * 120.00224 * 354.85855 * 15 14 13 17 17 N 1.34779 * 119.99965 * 174.85071 * 15 14 13 18 18 C 1.46490 * 120.00131 * 179.72157 * 17 15 14 19 19 C 1.50701 * 109.47314 * 180.28058 * 18 17 15 20 20 C 1.38264 * 119.97567 * 269.72382 * 19 18 17 21 21 C 1.38297 * 120.03709 * 179.78449 * 20 19 18 22 22 C 1.37968 * 119.92073 * 0.47372 * 21 20 19 23 23 C 1.38596 * 120.03668 * 359.78505 * 22 21 20 24 24 C 1.37965 * 120.04044 * 359.97438 * 23 22 21 25 25 C 1.51084 * 107.27097 * 179.97438 * 23 22 21 26 26 O 1.43946 * 105.95573 * 17.68646 * 25 23 22 27 27 C 1.43942 * 104.94996 * 331.55361 * 26 25 23 28 28 N 1.31926 * 120.84905 * 359.42955 * 13 12 11 29 29 H 0.97000 * 119.99976 * 359.97438 * 1 2 3 30 30 H 1.08004 * 120.42827 * 359.96598 * 10 9 7 31 31 H 1.08001 * 120.66749 * 180.02562 * 11 10 9 32 32 H 1.08003 * 120.25130 * 180.27940 * 12 11 10 33 33 H 0.97004 * 120.00175 * 5.39780 * 14 13 12 34 34 H 0.97003 * 119.99772 * 0.02562 * 17 15 14 35 35 H 1.09000 * 109.47654 * 300.28634 * 18 17 15 36 36 H 1.09003 * 109.47021 * 60.27913 * 18 17 15 37 37 H 1.07997 * 119.98046 * 0.02562 * 20 19 18 38 38 H 1.08001 * 120.04135 * 180.25489 * 21 20 19 39 39 H 1.08003 * 120.04138 * 180.02562 * 24 23 22 40 40 H 1.09005 * 110.15615 * 136.80657 * 25 23 22 41 41 H 1.08998 * 110.15418 * 258.56557 * 25 23 22 42 42 H 1.09002 * 110.15341 * 147.56723 * 27 26 25 43 43 H 1.08994 * 110.15309 * 269.25336 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 2.4889 2.0465 -1.4001 5 1 1.4388 2.6528 0.7001 6 1 3.5389 1.4403 0.7000 7 6 2.0076 -1.2126 0.0005 8 1 3.0876 -1.2125 0.0001 9 6 1.3010 -2.4366 0.0005 10 6 2.0085 -3.6517 0.0005 11 6 1.3033 -4.8414 0.0011 12 6 -0.0827 -4.7934 0.0074 13 6 -0.7277 -3.5549 0.0012 14 7 -2.1194 -3.5047 0.0014 15 6 -2.7509 -2.3198 -0.1144 16 8 -2.1092 -1.2873 -0.1250 17 7 -4.0941 -2.2794 -0.2187 18 6 -4.7811 -0.9912 -0.3384 19 6 -6.2675 -1.2213 -0.4324 20 6 -6.8641 -1.3863 -1.6687 21 6 -8.2274 -1.6020 -1.7562 22 6 -8.9927 -1.6425 -0.6090 23 6 -8.3953 -1.4717 0.6299 24 6 -7.0346 -1.2615 0.7175 25 6 -9.4861 -1.5676 1.6709 26 8 -10.6006 -2.2038 1.0188 27 6 -10.4702 -1.8489 -0.3700 28 7 -0.0357 -2.4317 0.0008 29 1 -0.4850 0.8400 0.0004 30 1 3.0886 -3.6558 0.0000 31 1 1.8216 -5.7890 0.0015 32 1 -0.6588 -5.7069 0.0125 33 1 -2.6342 -4.3227 0.0849 34 1 -4.6062 -3.1032 -0.2100 35 1 -4.5627 -0.3800 0.5373 36 1 -4.4355 -0.4771 -1.2354 37 1 -6.2647 -1.3507 -2.5663 38 1 -8.6929 -1.7351 -2.7216 39 1 -6.5690 -1.1288 1.6829 40 1 -9.1492 -2.1716 2.5134 41 1 -9.7689 -0.5715 2.0113 42 1 -10.8435 -2.6559 -1.0005 43 1 -11.0171 -0.9287 -0.5754 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001413618370.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:21 Heat of formation + Delta-G solvation = 27.203070 kcal Electronic energy + Delta-G solvation = -27827.135816 eV Core-core repulsion = 23838.714564 eV Total energy + Delta-G solvation = -3988.421252 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.00120 -39.47342 -38.15303 -37.46571 -34.58751 -33.86494 -32.95688 -31.85807 -31.56703 -30.25032 -29.07693 -28.30019 -26.46569 -25.41700 -24.10566 -22.04875 -22.03536 -21.22049 -20.86925 -19.80345 -18.06344 -17.31982 -16.89210 -16.71005 -16.33974 -16.22929 -15.51804 -14.89054 -14.70993 -14.50773 -14.48384 -14.33934 -13.98953 -13.68574 -13.40946 -13.11484 -13.02482 -12.84881 -12.77037 -12.68791 -12.14118 -11.91028 -11.84638 -11.51725 -11.17781 -11.11477 -10.92055 -10.61721 -10.43342 -10.42666 -9.90084 -9.67300 -9.26315 -9.10926 -8.99665 -8.78233 -8.48952 -7.92112 -7.18203 -6.91268 -6.07874 -4.35816 0.83090 1.02224 2.87051 3.10061 3.15838 3.19470 3.21908 3.30212 3.55735 3.57250 3.84791 4.09599 4.22534 4.26965 4.55665 4.65420 4.84816 4.94132 4.97192 4.98771 5.02918 5.12221 5.18637 5.32659 5.43706 5.56021 5.80592 5.87557 5.95772 5.99993 6.08303 6.13141 6.31538 6.36960 6.50760 6.59900 6.63809 6.82315 6.87930 6.94186 7.26732 7.38478 7.65120 7.76933 7.84863 8.20351 8.32823 8.68241 8.83203 9.09525 9.60547 10.30301 10.53010 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.015773 B = 0.002450 C = 0.002218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1774.717288 B =11427.026598 C =12621.996625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.649 5.649 2 C 0.056 3.944 3 Si 0.894 3.106 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.264 1.264 7 C -0.425 4.425 8 H 0.082 0.918 9 C 0.271 3.729 10 C -0.307 4.307 11 C -0.036 4.036 12 C -0.358 4.358 13 C 0.387 3.613 14 N -0.673 5.673 15 C 0.664 3.336 16 O -0.462 6.462 17 N -0.757 5.757 18 C 0.186 3.814 19 C -0.091 4.091 20 C -0.094 4.094 21 C -0.096 4.096 22 C -0.132 4.132 23 C -0.136 4.136 24 C -0.074 4.074 25 C 0.091 3.909 26 O -0.362 6.362 27 C 0.091 3.909 28 N -0.471 5.471 29 H 0.271 0.729 30 H 0.096 0.904 31 H 0.095 0.905 32 H 0.090 0.910 33 H 0.395 0.605 34 H 0.385 0.615 35 H 0.073 0.927 36 H 0.074 0.926 37 H 0.132 0.868 38 H 0.126 0.874 39 H 0.129 0.871 40 H 0.098 0.902 41 H 0.078 0.922 42 H 0.097 0.903 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.901 -1.649 -1.040 19.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.267 5.267 2 C -0.173 4.173 3 Si 0.719 3.281 4 H -0.197 1.197 5 H -0.204 1.204 6 H -0.188 1.188 7 C -0.456 4.456 8 H 0.100 0.900 9 C 0.146 3.854 10 C -0.330 4.330 11 C -0.060 4.060 12 C -0.385 4.385 13 C 0.147 3.853 14 N -0.321 5.321 15 C 0.362 3.638 16 O -0.326 6.326 17 N -0.417 5.417 18 C 0.062 3.938 19 C -0.092 4.092 20 C -0.113 4.113 21 C -0.114 4.114 22 C -0.132 4.132 23 C -0.136 4.136 24 C -0.092 4.092 25 C 0.015 3.985 26 O -0.281 6.281 27 C 0.015 3.985 28 N -0.190 5.190 29 H 0.083 0.917 30 H 0.114 0.886 31 H 0.113 0.887 32 H 0.108 0.892 33 H 0.228 0.772 34 H 0.217 0.783 35 H 0.091 0.909 36 H 0.092 0.908 37 H 0.150 0.850 38 H 0.144 0.856 39 H 0.147 0.853 40 H 0.116 0.884 41 H 0.095 0.905 42 H 0.115 0.885 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -20.069 0.263 -0.960 20.093 hybrid contribution 0.401 -0.885 -0.106 0.978 sum -19.667 -0.622 -1.066 19.706 Atomic orbital electron populations 1.70352 1.05569 1.27250 1.23527 1.26192 0.95149 1.00508 0.95471 0.86544 0.80560 0.82042 0.78956 1.19725 1.20374 1.18815 1.19565 0.94016 0.89377 1.42599 0.90016 1.18401 0.87173 0.91955 0.87918 1.21619 0.98528 0.93548 1.19278 1.20540 0.93124 0.96510 0.95846 1.20436 0.94755 0.94799 1.28461 1.18337 0.82425 0.90891 0.93640 1.42550 1.05228 1.07921 1.76418 1.16426 0.81206 0.85540 0.80627 1.91394 1.62231 1.29842 1.49101 1.45319 1.05700 1.08116 1.82605 1.19847 0.85097 0.85826 1.03043 1.20009 0.95788 1.00441 0.92928 1.21159 0.94267 0.98141 0.97686 1.20386 0.93343 1.00406 0.97233 1.21058 0.96252 1.01547 0.94364 1.21002 0.94849 1.02024 0.95769 1.20366 0.91387 0.98633 0.98831 1.21756 0.83638 0.98676 0.94445 1.89086 1.46431 1.73512 1.19071 1.21748 0.91663 1.01372 0.83764 1.68692 1.06849 1.23113 1.20337 0.91693 0.88609 0.88653 0.89191 0.77245 0.78282 0.90911 0.90823 0.84984 0.85572 0.85306 0.88380 0.90451 0.88528 0.90525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.65 -18.11 8.99 55.55 0.50 -17.61 16 2 C 0.06 1.49 5.50 -17.35 -0.10 1.40 16 3 Si 0.89 19.39 29.56 -169.99 -5.02 14.37 16 4 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 5 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 6 H -0.26 -5.61 7.11 56.52 0.40 -5.21 16 7 C -0.42 -11.80 9.14 -37.74 -0.34 -12.15 16 8 H 0.08 2.12 7.85 -52.49 -0.41 1.71 16 9 C 0.27 7.69 6.55 -84.99 -0.56 7.14 16 10 C -0.31 -7.80 9.83 -38.66 -0.38 -8.18 16 11 C -0.04 -0.83 10.15 -39.39 -0.40 -1.23 16 12 C -0.36 -8.13 9.95 -38.89 -0.39 -8.52 16 13 C 0.39 9.54 7.43 -154.99 -1.15 8.39 16 14 N -0.67 -13.41 5.39 -15.79 -0.09 -13.49 16 15 C 0.66 13.51 8.52 -86.92 -0.74 12.77 16 16 O -0.46 -11.71 12.11 5.30 0.06 -11.65 16 17 N -0.76 -11.05 5.55 -66.42 -0.37 -11.42 16 18 C 0.19 2.46 5.80 -5.20 -0.03 2.43 16 19 C -0.09 -0.97 5.25 -104.59 -0.55 -1.52 16 20 C -0.09 -0.90 9.70 -39.55 -0.38 -1.29 16 21 C -0.10 -0.83 10.04 -39.66 -0.40 -1.23 16 22 C -0.13 -1.21 6.32 -104.40 -0.66 -1.87 16 23 C -0.14 -1.31 6.32 -104.40 -0.66 -1.97 16 24 C -0.07 -0.74 9.70 -39.66 -0.38 -1.12 16 25 C 0.09 0.76 7.63 36.19 0.28 1.04 16 26 O -0.36 -3.57 11.72 -35.23 -0.41 -3.98 16 27 C 0.09 0.71 7.63 36.19 0.28 0.99 16 28 N -0.47 -13.38 5.74 -10.26 -0.06 -13.44 16 29 H 0.27 7.11 8.29 -40.82 -0.34 6.77 16 30 H 0.10 2.26 8.06 -52.48 -0.42 1.84 16 31 H 0.10 1.85 8.06 -52.49 -0.42 1.43 16 32 H 0.09 1.75 8.06 -52.48 -0.42 1.32 16 33 H 0.39 6.07 8.71 -40.82 -0.36 5.72 16 34 H 0.38 4.55 8.48 -40.82 -0.35 4.20 16 35 H 0.07 1.04 8.09 -51.93 -0.42 0.62 16 36 H 0.07 1.05 8.08 -51.93 -0.42 0.63 16 37 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 38 H 0.13 0.81 8.06 -52.49 -0.42 0.38 16 39 H 0.13 1.19 8.06 -52.48 -0.42 0.76 16 40 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 42 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 366.26 15.07 5.52 5.52 Total: -1.00 -34.26 366.26 -11.75 -46.01 By element: Atomic # 1 Polarization: 15.92 SS G_CDS: -5.32 Total: 10.60 kcal Atomic # 6 Polarization: 1.66 SS G_CDS: -6.57 Total: -4.91 kcal Atomic # 7 Polarization: -55.95 SS G_CDS: -0.01 Total: -55.96 kcal Atomic # 8 Polarization: -15.28 SS G_CDS: -0.35 Total: -15.63 kcal Atomic # 14 Polarization: 19.39 SS G_CDS: -5.02 Total: 14.37 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -34.26 -11.75 -46.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413618370.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.215 kcal (2) G-P(sol) polarization free energy of solvation -34.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.012 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds