Wall clock time and date at job start Sat Apr 11 2020 05:39:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30746 * 1 3 3 Si 1.86803 * 119.99652 * 2 1 4 4 H 1.48503 * 109.47115 * 269.99814 * 3 2 1 5 5 H 1.48504 * 109.47416 * 30.00154 * 3 2 1 6 6 H 1.48498 * 109.47009 * 150.00000 * 3 2 1 7 7 C 1.40019 * 120.00398 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00315 * 179.97438 * 7 2 1 9 9 C 1.41335 * 119.99939 * 0.02562 * 7 2 1 10 10 C 1.40605 * 119.79312 * 179.97438 * 9 7 2 11 11 C 1.38304 * 119.13400 * 179.97438 * 10 9 7 12 12 C 1.38687 * 118.67025 * 359.72819 * 11 10 9 13 13 C 1.39647 * 119.49536 * 0.55407 * 12 11 10 14 14 N 1.39251 * 119.57440 * 179.71194 * 13 12 11 15 15 C 1.34775 * 119.99726 * 185.40515 * 14 13 12 16 16 O 1.21576 * 120.00224 * 354.85855 * 15 14 13 17 17 N 1.34779 * 119.99965 * 174.85071 * 15 14 13 18 18 C 1.46490 * 120.00131 * 179.72157 * 17 15 14 19 19 C 1.50701 * 109.47314 * 180.28058 * 18 17 15 20 20 C 1.38264 * 119.97567 * 269.72382 * 19 18 17 21 21 C 1.38297 * 120.03709 * 179.78449 * 20 19 18 22 22 C 1.37968 * 119.92073 * 0.47372 * 21 20 19 23 23 C 1.38596 * 120.03668 * 359.78505 * 22 21 20 24 24 C 1.37965 * 120.04044 * 359.97438 * 23 22 21 25 25 C 1.51084 * 107.27097 * 179.97438 * 23 22 21 26 26 O 1.43946 * 105.95573 * 17.68646 * 25 23 22 27 27 C 1.43942 * 104.94996 * 331.55361 * 26 25 23 28 28 N 1.31926 * 120.84905 * 359.42955 * 13 12 11 29 29 H 0.97000 * 119.99976 * 359.97438 * 1 2 3 30 30 H 1.08004 * 120.42827 * 359.96598 * 10 9 7 31 31 H 1.08001 * 120.66749 * 180.02562 * 11 10 9 32 32 H 1.08003 * 120.25130 * 180.27940 * 12 11 10 33 33 H 0.97004 * 120.00175 * 5.39780 * 14 13 12 34 34 H 0.97003 * 119.99772 * 0.02562 * 17 15 14 35 35 H 1.09000 * 109.47654 * 300.28634 * 18 17 15 36 36 H 1.09003 * 109.47021 * 60.27913 * 18 17 15 37 37 H 1.07997 * 119.98046 * 0.02562 * 20 19 18 38 38 H 1.08001 * 120.04135 * 180.25489 * 21 20 19 39 39 H 1.08003 * 120.04138 * 180.02562 * 24 23 22 40 40 H 1.09005 * 110.15615 * 136.80657 * 25 23 22 41 41 H 1.08998 * 110.15418 * 258.56557 * 25 23 22 42 42 H 1.09002 * 110.15341 * 147.56723 * 27 26 25 43 43 H 1.08994 * 110.15309 * 269.25336 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 2.4889 2.0465 -1.4001 5 1 1.4388 2.6528 0.7001 6 1 3.5389 1.4403 0.7000 7 6 2.0076 -1.2126 0.0005 8 1 3.0876 -1.2125 0.0001 9 6 1.3010 -2.4366 0.0005 10 6 2.0085 -3.6517 0.0005 11 6 1.3033 -4.8414 0.0011 12 6 -0.0827 -4.7934 0.0074 13 6 -0.7277 -3.5549 0.0012 14 7 -2.1194 -3.5047 0.0014 15 6 -2.7509 -2.3198 -0.1144 16 8 -2.1092 -1.2873 -0.1250 17 7 -4.0941 -2.2794 -0.2187 18 6 -4.7811 -0.9912 -0.3384 19 6 -6.2675 -1.2213 -0.4324 20 6 -6.8641 -1.3863 -1.6687 21 6 -8.2274 -1.6020 -1.7562 22 6 -8.9927 -1.6425 -0.6090 23 6 -8.3953 -1.4717 0.6299 24 6 -7.0346 -1.2615 0.7175 25 6 -9.4861 -1.5676 1.6709 26 8 -10.6006 -2.2038 1.0188 27 6 -10.4702 -1.8489 -0.3700 28 7 -0.0357 -2.4317 0.0008 29 1 -0.4850 0.8400 0.0004 30 1 3.0886 -3.6558 0.0000 31 1 1.8216 -5.7890 0.0015 32 1 -0.6588 -5.7069 0.0125 33 1 -2.6342 -4.3227 0.0849 34 1 -4.6062 -3.1032 -0.2100 35 1 -4.5627 -0.3800 0.5373 36 1 -4.4355 -0.4771 -1.2354 37 1 -6.2647 -1.3507 -2.5663 38 1 -8.6929 -1.7351 -2.7216 39 1 -6.5690 -1.1288 1.6829 40 1 -9.1492 -2.1716 2.5134 41 1 -9.7689 -0.5715 2.0113 42 1 -10.8435 -2.6559 -1.0005 43 1 -11.0171 -0.9287 -0.5754 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001413618370.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:21 Heat of formation + Delta-G solvation = 5.414771 kcal Electronic energy + Delta-G solvation = -27828.080628 eV Core-core repulsion = 23838.714564 eV Total energy + Delta-G solvation = -3989.366064 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.72303 -41.07834 -39.59144 -38.63225 -36.06302 -35.45797 -34.81222 -32.67437 -32.47738 -32.15293 -30.78695 -29.12520 -27.67672 -27.08766 -24.97267 -23.74149 -23.03644 -22.71374 -21.78027 -21.42876 -19.79670 -18.87667 -18.06211 -17.61630 -17.38185 -17.04513 -16.74218 -16.38106 -16.24952 -16.02398 -15.76782 -15.57993 -15.26361 -14.91440 -14.64449 -14.55986 -14.26064 -14.00711 -13.84999 -13.65246 -13.46863 -13.40503 -12.87987 -12.86436 -12.70649 -12.53414 -12.33175 -12.29314 -11.88472 -11.74990 -11.49519 -11.12030 -10.87470 -10.84975 -9.94222 -9.89501 -9.82266 -9.55719 -9.08376 -8.76641 -8.00096 -6.38768 0.05667 0.29680 0.98592 1.30324 1.40802 1.52761 1.55430 1.84269 2.28412 2.57279 2.63001 2.94262 3.05739 3.13728 3.47480 3.60064 3.72595 3.94212 4.09412 4.23362 4.34034 4.37308 4.40808 4.44309 4.53829 4.61044 4.66109 4.75546 4.77212 4.86758 4.90659 4.98684 5.03905 5.08303 5.24825 5.28359 5.29719 5.53159 5.62321 5.68390 5.69292 5.87016 5.87899 5.94446 6.05003 6.32784 6.44130 6.84204 7.09571 7.25428 8.01568 8.40099 8.60615 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.015773 B = 0.002450 C = 0.002218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1774.717288 B =11427.026598 C =12621.996625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.684 5.684 2 C 0.009 3.991 3 Si 0.974 3.026 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.256 1.256 7 C -0.465 4.465 8 H 0.085 0.915 9 C 0.236 3.764 10 C -0.331 4.331 11 C -0.034 4.034 12 C -0.346 4.346 13 C 0.364 3.636 14 N -0.661 5.661 15 C 0.658 3.342 16 O -0.514 6.514 17 N -0.733 5.733 18 C 0.192 3.808 19 C -0.098 4.098 20 C -0.097 4.097 21 C -0.094 4.094 22 C -0.134 4.134 23 C -0.146 4.146 24 C -0.079 4.079 25 C 0.090 3.910 26 O -0.381 6.381 27 C 0.088 3.912 28 N -0.506 5.506 29 H 0.269 0.731 30 H 0.104 0.896 31 H 0.137 0.863 32 H 0.131 0.869 33 H 0.417 0.583 34 H 0.402 0.598 35 H 0.058 0.942 36 H 0.061 0.939 37 H 0.139 0.861 38 H 0.152 0.848 39 H 0.131 0.869 40 H 0.106 0.894 41 H 0.090 0.910 42 H 0.113 0.887 43 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.571 -2.851 -1.419 21.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.303 5.303 2 C -0.217 4.217 3 Si 0.795 3.205 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.180 1.180 7 C -0.496 4.496 8 H 0.103 0.897 9 C 0.110 3.890 10 C -0.354 4.354 11 C -0.058 4.058 12 C -0.372 4.372 13 C 0.125 3.875 14 N -0.312 5.312 15 C 0.357 3.643 16 O -0.382 6.382 17 N -0.393 5.393 18 C 0.068 3.932 19 C -0.099 4.099 20 C -0.116 4.116 21 C -0.111 4.111 22 C -0.135 4.135 23 C -0.146 4.146 24 C -0.098 4.098 25 C 0.014 3.986 26 O -0.300 6.300 27 C 0.013 3.987 28 N -0.225 5.225 29 H 0.080 0.920 30 H 0.122 0.878 31 H 0.155 0.845 32 H 0.149 0.851 33 H 0.254 0.746 34 H 0.238 0.762 35 H 0.077 0.923 36 H 0.079 0.921 37 H 0.156 0.844 38 H 0.170 0.830 39 H 0.149 0.851 40 H 0.124 0.876 41 H 0.108 0.892 42 H 0.131 0.869 43 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -21.811 -1.010 -1.338 21.876 hybrid contribution 0.774 -0.704 0.002 1.046 sum -21.038 -1.714 -1.337 21.150 Atomic orbital electron populations 1.70558 1.07091 1.27811 1.24805 1.27044 0.96055 1.03939 0.94629 0.85344 0.79114 0.76973 0.79067 1.19161 1.19866 1.18014 1.19881 0.94391 0.90462 1.44903 0.89688 1.18899 0.87965 0.93420 0.88688 1.21802 0.99194 0.93843 1.20516 1.21020 0.93491 0.97330 0.93959 1.20912 0.95149 0.95547 1.25580 1.18839 0.84157 0.91088 0.93440 1.42390 1.03902 1.09013 1.75875 1.16691 0.82567 0.84921 0.80143 1.91384 1.63895 1.31577 1.51346 1.45040 1.03797 1.09618 1.80853 1.19776 0.86875 0.84758 1.01744 1.19712 0.93878 1.02389 0.93886 1.21282 0.95016 0.97908 0.97377 1.20635 0.92770 0.99391 0.98347 1.21367 0.97165 1.00665 0.94292 1.21188 0.94791 1.01944 0.96720 1.20390 0.91809 0.98832 0.98741 1.21864 0.82988 0.99517 0.94262 1.89065 1.46845 1.73973 1.20130 1.21934 0.90856 1.02814 0.83137 1.68655 1.07197 1.25302 1.21385 0.92043 0.87786 0.84496 0.85098 0.74628 0.76228 0.92331 0.92117 0.84362 0.83006 0.85093 0.87582 0.89187 0.86906 0.88918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.68 -40.02 8.99 21.84 0.20 -39.82 16 2 C 0.01 0.50 5.50 85.29 0.47 0.97 16 3 Si 0.97 41.30 29.56 68.60 2.03 43.33 16 4 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 5 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 6 H -0.26 -10.40 7.11 99.48 0.71 -9.70 16 7 C -0.47 -26.93 9.14 23.46 0.21 -26.71 16 8 H 0.09 4.60 7.85 -2.91 -0.02 4.58 16 9 C 0.24 13.86 6.55 40.20 0.26 14.12 16 10 C -0.33 -16.94 9.83 22.86 0.22 -16.71 16 11 C -0.03 -1.49 10.15 22.39 0.23 -1.26 16 12 C -0.35 -14.94 9.95 22.72 0.23 -14.71 16 13 C 0.36 17.94 7.43 133.24 0.99 18.93 16 14 N -0.66 -25.98 5.39 -322.13 -1.74 -27.72 16 15 C 0.66 27.21 8.52 179.05 1.53 28.74 16 16 O -0.51 -27.22 12.11 -3.95 -0.05 -27.27 16 17 N -0.73 -21.30 5.55 -482.32 -2.68 -23.98 16 18 C 0.19 5.21 5.80 85.64 0.50 5.71 16 19 C -0.10 -2.03 5.25 -19.85 -0.10 -2.13 16 20 C -0.10 -1.73 9.70 22.29 0.22 -1.52 16 21 C -0.09 -1.40 10.04 22.22 0.22 -1.18 16 22 C -0.13 -2.16 6.32 -19.72 -0.12 -2.29 16 23 C -0.15 -2.59 6.32 -19.72 -0.12 -2.72 16 24 C -0.08 -1.53 9.70 22.22 0.22 -1.31 16 25 C 0.09 1.35 7.63 71.36 0.54 1.90 16 26 O -0.38 -6.75 11.72 -148.98 -1.75 -8.49 16 27 C 0.09 1.16 7.63 71.36 0.54 1.70 16 28 N -0.51 -29.59 5.74 -186.36 -1.07 -30.66 16 29 H 0.27 14.85 8.29 -92.71 -0.77 14.08 16 30 H 0.10 4.97 8.06 -2.91 -0.02 4.94 16 31 H 0.14 4.80 8.06 -2.91 -0.02 4.78 16 32 H 0.13 4.51 8.06 -2.91 -0.02 4.49 16 33 H 0.42 12.01 8.71 -92.71 -0.81 11.20 16 34 H 0.40 8.99 8.48 -92.71 -0.79 8.21 16 35 H 0.06 1.76 8.09 -2.39 -0.02 1.74 16 36 H 0.06 1.81 8.08 -2.39 -0.02 1.79 16 37 H 0.14 2.25 8.06 -2.91 -0.02 2.22 16 38 H 0.15 1.45 8.06 -2.91 -0.02 1.42 16 39 H 0.13 2.39 8.06 -2.91 -0.02 2.36 16 40 H 0.11 1.39 8.14 -2.38 -0.02 1.37 16 41 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 42 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 43 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 Total: -1.00 -77.74 366.26 0.45 -77.29 By element: Atomic # 1 Polarization: 36.32 SS G_CDS: -0.52 Total: 35.80 kcal Atomic # 6 Polarization: -4.50 SS G_CDS: 6.03 Total: 1.52 kcal Atomic # 7 Polarization: -116.89 SS G_CDS: -5.29 Total: -122.17 kcal Atomic # 8 Polarization: -33.97 SS G_CDS: -1.79 Total: -35.77 kcal Atomic # 14 Polarization: 41.30 SS G_CDS: 2.03 Total: 43.33 kcal Total: -77.74 0.45 -77.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413618370.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.707 kcal (2) G-P(sol) polarization free energy of solvation -77.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.292 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds