Wall clock time and date at job start Sat Apr 11 2020 05:38:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 N 1.31694 * 119.63659 * 2 1 4 4 C 1.31857 * 121.95498 * 180.02562 * 3 2 1 5 5 C 1.38989 * 120.98109 * 359.97438 * 4 3 2 6 6 N 1.39981 * 120.41767 * 180.02562 * 5 4 3 7 7 C 1.34780 * 119.99869 * 214.65949 * 6 5 4 8 8 O 1.21288 * 119.99777 * 355.39940 * 7 6 5 9 9 C 1.50700 * 120.00035 * 175.40084 * 7 6 5 10 10 H 1.09004 * 109.46603 * 60.00029 * 9 7 6 11 11 C 1.50697 * 109.47227 * 300.00010 * 9 7 6 12 12 H 1.08003 * 119.99739 * 334.62079 * 11 9 7 13 13 C 1.37875 * 120.00262 * 154.61518 * 11 9 7 14 14 N 1.31517 * 119.99427 * 5.04412 * 13 11 9 15 15 Si 1.86796 * 120.00187 * 185.04144 * 13 11 9 16 16 H 1.48500 * 109.47127 * 0.02562 * 15 13 11 17 17 H 1.48505 * 109.47136 * 119.99940 * 15 13 11 18 18 H 1.48496 * 109.47107 * 240.00027 * 15 13 11 19 19 C 1.50703 * 109.47248 * 179.97438 * 9 7 6 20 20 C 1.38229 * 119.99743 * 65.54693 * 19 9 7 21 21 C 1.38240 * 119.99851 * 179.81377 * 20 19 9 22 22 C 1.38235 * 119.99675 * 0.39389 * 21 20 19 23 23 C 1.38236 * 120.00053 * 359.85849 * 22 21 20 24 24 C 1.38226 * 120.00128 * 359.95714 * 23 22 21 25 25 C 1.38988 * 119.15700 * 359.74980 * 5 4 3 26 26 C 1.39531 * 119.63636 * 180.02562 * 2 1 3 27 27 C 1.47852 * 120.52678 * 359.96073 * 26 2 1 28 28 N 1.34785 * 120.00268 * 173.64791 * 27 26 2 29 29 O 1.21550 * 120.00177 * 353.64486 * 27 26 2 30 30 H 1.09000 * 109.47390 * 263.02514 * 1 2 3 31 31 H 1.09000 * 109.46676 * 23.02921 * 1 2 3 32 32 H 1.09005 * 109.46740 * 143.01883 * 1 2 3 33 33 H 1.07997 * 119.50976 * 180.02562 * 4 3 2 34 34 H 0.97001 * 120.00143 * 34.66040 * 6 5 4 35 35 H 0.97008 * 119.99478 * 180.02562 * 14 13 11 36 36 H 1.07997 * 120.00522 * 359.97438 * 20 19 9 37 37 H 1.07994 * 120.00222 * 180.22912 * 21 20 19 38 38 H 1.08003 * 119.99733 * 179.83373 * 22 21 20 39 39 H 1.08004 * 119.99991 * 179.97438 * 23 22 21 40 40 H 1.08001 * 120.00252 * 180.02562 * 24 23 22 41 41 H 1.08001 * 120.88406 * 180.27286 * 25 5 4 42 42 H 0.96996 * 119.99275 * 359.97438 * 28 27 26 43 43 H 0.96996 * 120.00143 * 179.72698 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1583 1.1447 0.0000 4 6 3.4758 1.1980 -0.0005 5 6 4.2389 0.0363 -0.0005 6 7 5.6369 0.1067 -0.0005 7 6 6.3582 -0.8183 -0.6643 8 8 5.8012 -1.7580 -1.1914 9 6 7.8568 -0.6851 -0.7516 10 1 8.2811 -0.6910 0.2524 11 6 8.2068 0.6104 -1.4373 12 1 7.5062 1.0655 -2.1218 13 6 9.4213 1.2147 -1.1908 14 7 10.3140 0.6126 -0.4357 15 14 9.7987 2.8885 -1.9293 16 1 8.6377 3.3481 -2.7331 17 1 10.0621 3.8624 -0.8395 18 1 10.9959 2.7861 -2.8017 19 6 8.4187 -1.8395 -1.5407 20 6 8.1142 -1.9727 -2.8825 21 6 8.6327 -3.0295 -3.6073 22 6 9.4491 -3.9575 -2.9882 23 6 9.7493 -3.8271 -1.6452 24 6 9.2339 -2.7683 -0.9214 25 6 3.5962 -1.1960 0.0053 26 6 2.1971 -1.2128 -0.0005 27 6 1.4614 -2.4953 -0.0002 28 7 2.1323 -3.6571 -0.1299 29 8 0.2516 -2.5020 0.1170 30 1 -0.3634 -0.1248 1.0200 31 1 -0.3633 0.9458 -0.4020 32 1 -0.3633 -0.8210 -0.6182 33 1 3.9693 2.1586 -0.0001 34 1 6.0866 0.8212 0.4772 35 1 11.1684 1.0380 -0.2620 36 1 7.4733 -1.2498 -3.3652 37 1 8.3979 -3.1316 -4.6564 38 1 9.8520 -4.7847 -3.5538 39 1 10.3868 -4.5524 -1.1614 40 1 9.4688 -2.6662 0.1278 41 1 4.1616 -2.1162 0.0098 42 1 3.0977 -3.6517 -0.2238 43 1 1.6501 -4.4987 -0.1257 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001433541124.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:49 Heat of formation + Delta-G solvation = -16.382953 kcal Electronic energy + Delta-G solvation = -28725.634043 eV Core-core repulsion = 24735.322759 eV Total energy + Delta-G solvation = -3990.311284 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.95844 -39.61951 -38.70083 -37.86265 -34.88448 -34.08616 -33.82718 -32.13073 -31.48729 -30.98939 -30.02043 -27.97163 -26.68539 -24.78402 -24.10900 -22.50090 -21.71100 -21.38644 -20.58993 -19.63803 -18.20162 -17.49204 -16.96322 -16.32680 -16.21684 -16.21124 -15.75761 -15.45840 -15.18877 -14.63826 -14.40536 -14.25379 -13.97917 -13.80176 -13.57522 -13.26852 -13.07925 -12.59099 -12.47604 -12.37807 -12.30644 -11.97160 -11.83240 -11.73784 -11.16533 -11.13829 -10.57591 -10.47152 -10.40078 -10.27877 -10.14567 -9.80590 -9.66879 -9.58247 -9.48198 -8.92936 -8.82949 -8.04411 -8.02134 -7.71941 -6.41061 -4.50590 0.64347 1.23814 2.29017 2.31073 2.78378 3.09711 3.15741 3.21113 3.27991 3.36620 3.52344 3.86849 4.16163 4.39546 4.63870 4.72956 4.80757 4.90160 4.95927 5.17597 5.38368 5.64797 5.68896 5.74018 5.78723 5.81448 5.85492 5.93316 6.08707 6.13070 6.19073 6.39575 6.45599 6.48116 6.68369 6.68859 6.85295 6.91639 7.01070 7.20326 7.29160 7.34178 7.47728 7.60925 7.77458 7.81795 7.93007 7.97236 8.13580 8.51202 8.72551 9.17504 10.66491 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011216 B = 0.003775 C = 0.002991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2495.830826 B = 7414.856429 C = 9357.722537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.158 3.842 3 N -0.471 5.471 4 C 0.103 3.897 5 C 0.101 3.899 6 N -0.666 5.666 7 C 0.531 3.469 8 O -0.545 6.545 9 C 0.059 3.941 10 H 0.085 0.915 11 C -0.525 4.525 12 H 0.065 0.935 13 C 0.077 3.923 14 N -0.870 5.870 15 Si 0.898 3.102 16 H -0.270 1.270 17 H -0.280 1.280 18 H -0.281 1.281 19 C -0.009 4.009 20 C -0.084 4.084 21 C -0.135 4.135 22 C -0.147 4.147 23 C -0.132 4.132 24 C -0.111 4.111 25 C -0.050 4.050 26 C -0.181 4.181 27 C 0.573 3.427 28 N -0.848 5.848 29 O -0.538 6.538 30 H 0.078 0.922 31 H 0.066 0.934 32 H 0.097 0.903 33 H 0.165 0.835 34 H 0.421 0.579 35 H 0.268 0.732 36 H 0.110 0.890 37 H 0.106 0.894 38 H 0.105 0.895 39 H 0.106 0.894 40 H 0.111 0.889 41 H 0.155 0.845 42 H 0.406 0.594 43 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.276 -4.185 2.302 9.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.019 3.981 3 N -0.180 5.180 4 C -0.058 4.058 5 C 0.003 3.997 6 N -0.311 5.311 7 C 0.323 3.677 8 O -0.422 6.422 9 C 0.038 3.962 10 H 0.103 0.897 11 C -0.562 4.562 12 H 0.083 0.917 13 C -0.129 4.129 14 N -0.505 5.505 15 Si 0.725 3.275 16 H -0.194 1.194 17 H -0.206 1.206 18 H -0.207 1.207 19 C -0.010 4.010 20 C -0.102 4.102 21 C -0.153 4.153 22 C -0.165 4.165 23 C -0.151 4.151 24 C -0.130 4.130 25 C -0.078 4.078 26 C -0.187 4.187 27 C 0.359 3.641 28 N -0.412 5.412 29 O -0.417 6.417 30 H 0.097 0.903 31 H 0.085 0.915 32 H 0.115 0.885 33 H 0.182 0.818 34 H 0.258 0.742 35 H 0.077 0.923 36 H 0.128 0.872 37 H 0.124 0.876 38 H 0.123 0.877 39 H 0.124 0.876 40 H 0.129 0.871 41 H 0.172 0.828 42 H 0.236 0.764 43 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -9.614 -3.885 2.069 10.573 hybrid contribution 1.799 0.187 -0.327 1.837 sum -7.815 -3.698 1.742 8.820 Atomic orbital electron populations 1.20943 0.87783 1.03443 1.03764 1.21365 0.97398 0.86610 0.92743 1.67599 1.08805 1.28352 1.13219 1.22915 0.89220 0.97690 0.95972 1.18815 0.85557 0.94303 1.01020 1.43669 1.02362 1.32248 1.52812 1.22028 0.91755 0.79517 0.74409 1.90560 1.73376 1.31995 1.46309 1.18077 0.84410 0.94235 0.99466 0.89701 1.20686 1.03093 1.04130 1.28324 0.91661 1.24952 0.95686 0.97887 0.94410 1.69940 1.06617 1.37682 1.36263 0.86423 0.78742 0.83162 0.79174 1.19420 1.20575 1.20732 1.19892 0.94542 0.92604 0.93991 1.20800 0.98668 0.96590 0.94188 1.20946 0.99376 0.96064 0.98926 1.20808 1.00928 0.99649 0.95087 1.20899 1.00991 0.98633 0.94530 1.20934 0.98408 0.94103 0.99507 1.21926 0.92619 0.98971 0.94315 1.20580 0.93710 0.94759 1.09664 1.17993 0.86715 0.83965 0.75380 1.43788 1.12469 1.08318 1.76624 1.90752 1.13575 1.87276 1.50064 0.90349 0.91493 0.88460 0.81818 0.74181 0.92256 0.87219 0.87635 0.87733 0.87578 0.87075 0.82804 0.76375 0.76493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.31 8.85 36.01 0.32 -0.99 16 2 C 0.16 2.31 6.82 -82.17 -0.56 1.75 16 3 N -0.47 -6.98 10.25 -9.00 -0.09 -7.08 16 4 C 0.10 1.43 11.11 -17.26 -0.19 1.24 16 5 C 0.10 1.53 6.32 -83.58 -0.53 1.00 16 6 N -0.67 -10.52 5.23 -9.79 -0.05 -10.57 16 7 C 0.53 10.08 6.89 -10.98 -0.08 10.00 16 8 O -0.55 -10.98 12.87 5.55 0.07 -10.91 16 9 C 0.06 1.25 2.21 -94.08 -0.21 1.04 16 10 H 0.09 1.87 7.43 -51.93 -0.39 1.49 16 11 C -0.52 -11.95 7.55 -34.44 -0.26 -12.21 16 12 H 0.07 1.51 7.81 -52.48 -0.41 1.10 16 13 C 0.08 1.81 5.45 -17.82 -0.10 1.71 16 14 N -0.87 -21.48 13.01 55.43 0.72 -20.76 16 15 Si 0.90 18.76 29.54 -169.99 -5.02 13.74 16 16 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 17 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 18 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 19 C -0.01 -0.20 4.31 -104.62 -0.45 -0.65 16 20 C -0.08 -1.77 8.28 -39.58 -0.33 -2.09 16 21 C -0.13 -2.51 10.05 -39.58 -0.40 -2.91 16 22 C -0.15 -2.57 10.05 -39.58 -0.40 -2.97 16 23 C -0.13 -2.40 10.05 -39.59 -0.40 -2.79 16 24 C -0.11 -2.24 9.67 -39.59 -0.38 -2.63 16 25 C -0.05 -0.74 8.26 -38.67 -0.32 -1.06 16 26 C -0.18 -2.61 5.89 -104.85 -0.62 -3.23 16 27 C 0.57 7.78 7.97 -12.32 -0.10 7.68 16 28 N -0.85 -8.79 8.83 30.53 0.27 -8.52 16 29 O -0.54 -8.27 14.21 5.32 0.08 -8.19 16 30 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 32 H 0.10 1.31 5.88 -51.93 -0.31 1.00 16 33 H 0.16 1.88 8.06 -52.49 -0.42 1.46 16 34 H 0.42 5.95 8.78 -40.82 -0.36 5.59 16 35 H 0.27 6.37 8.31 -40.82 -0.34 6.03 16 36 H 0.11 2.34 7.91 -52.49 -0.42 1.93 16 37 H 0.11 1.69 8.06 -52.49 -0.42 1.27 16 38 H 0.10 1.52 8.06 -52.48 -0.42 1.10 16 39 H 0.11 1.62 8.06 -52.48 -0.42 1.20 16 40 H 0.11 2.15 7.95 -52.49 -0.42 1.74 16 41 H 0.15 2.26 4.83 -52.49 -0.25 2.01 16 42 H 0.41 3.97 6.98 -40.82 -0.28 3.69 16 43 H 0.40 3.33 8.93 -40.82 -0.36 2.97 16 LS Contribution 368.30 15.07 5.55 5.55 Total: -1.00 -28.30 368.30 -8.34 -36.63 By element: Atomic # 1 Polarization: 22.07 SS G_CDS: -4.87 Total: 17.20 kcal Atomic # 6 Polarization: -2.10 SS G_CDS: -4.99 Total: -7.09 kcal Atomic # 7 Polarization: -47.77 SS G_CDS: 0.85 Total: -46.92 kcal Atomic # 8 Polarization: -19.25 SS G_CDS: 0.15 Total: -19.10 kcal Atomic # 14 Polarization: 18.76 SS G_CDS: -5.02 Total: 13.74 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -28.30 -8.34 -36.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001433541124.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.250 kcal (2) G-P(sol) polarization free energy of solvation -28.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds