Wall clock time and date at job start Sat Apr 11 2020 05:39:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30817 * 1 3 3 Si 1.86808 * 120.00071 * 2 1 4 4 H 1.48494 * 109.47155 * 274.98794 * 3 2 1 5 5 H 1.48509 * 109.46848 * 34.98727 * 3 2 1 6 6 H 1.48499 * 109.47090 * 154.98283 * 3 2 1 7 7 C 1.39949 * 120.00158 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00106 * 148.13147 * 7 2 1 9 9 C 1.41391 * 119.99737 * 328.12998 * 7 2 1 10 10 C 1.40712 * 120.24481 * 158.37617 * 9 7 2 11 11 C 1.37620 * 119.74784 * 180.02562 * 10 9 7 12 12 C 1.38634 * 120.24565 * 0.02562 * 11 10 9 13 13 C 1.50697 * 119.74762 * 179.97438 * 12 11 10 14 14 N 1.46503 * 109.47102 * 90.00034 * 13 12 11 15 15 C 1.34776 * 120.00078 * 179.97438 * 14 13 12 16 16 O 1.21552 * 120.00087 * 0.02562 * 15 14 13 17 17 C 1.47860 * 120.00125 * 179.97438 * 15 14 13 18 18 C 1.39621 * 120.11022 * 359.97438 * 17 15 14 19 19 C 1.37972 * 119.99341 * 180.02562 * 18 17 15 20 20 C 1.38260 * 120.22513 * 359.74079 * 19 18 17 21 21 C 1.38937 * 120.22171 * 0.51283 * 20 19 18 22 22 N 1.39979 * 120.00223 * 179.76463 * 21 20 19 23 23 C 1.34770 * 120.00051 * 217.14568 * 22 21 20 24 24 N 1.34779 * 119.99781 * 176.87156 * 23 22 21 25 25 O 1.21583 * 120.00168 * 356.86664 * 23 22 21 26 26 C 1.38641 * 120.00126 * 359.49041 * 21 20 19 27 27 C 1.38630 * 120.50110 * 0.25592 * 12 11 10 28 28 C 1.37618 * 120.24995 * 359.44243 * 27 12 11 29 29 H 0.97000 * 120.00277 * 359.97438 * 1 2 3 30 30 H 1.08005 * 120.12716 * 359.97438 * 10 9 7 31 31 H 1.07997 * 119.87386 * 180.02562 * 11 10 9 32 32 H 1.08996 * 109.47509 * 330.00202 * 13 12 11 33 33 H 1.09004 * 109.47179 * 210.00274 * 13 12 11 34 34 H 0.96993 * 119.99863 * 0.02562 * 14 13 12 35 35 H 1.07996 * 119.99970 * 359.97438 * 18 17 15 36 36 H 1.07996 * 119.88728 * 180.02562 * 19 18 17 37 37 H 1.08002 * 119.88886 * 180.28129 * 20 19 18 38 38 H 0.97000 * 119.99612 * 37.14208 * 22 21 20 39 39 H 0.97004 * 120.00197 * 179.97438 * 24 23 22 40 40 H 0.97000 * 120.00177 * 359.71735 * 24 23 22 41 41 H 1.07998 * 120.10604 * 180.22755 * 26 21 20 42 42 H 1.08005 * 119.87474 * 179.70659 * 27 12 11 43 43 H 1.08004 * 120.12951 * 180.27176 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.3843 2.1073 -1.3947 5 1 1.4963 2.6200 0.8029 6 1 3.5885 1.4121 0.5921 7 6 2.0079 -1.2120 -0.0005 8 1 2.9658 -1.2822 -0.4944 9 6 1.4608 -2.3444 0.6455 10 6 1.8866 -3.6377 0.2903 11 6 1.3469 -4.7328 0.9253 12 6 0.3867 -4.5654 1.9113 13 6 -0.1972 -5.7724 2.5990 14 7 0.6075 -6.0992 3.7789 15 6 0.2710 -7.1487 4.5545 16 8 -0.6999 -7.8245 4.2749 17 6 1.0835 -7.4789 5.7449 18 6 2.2001 -6.7052 6.0674 19 6 2.9568 -7.0157 7.1785 20 6 2.6105 -8.0887 7.9787 21 6 1.5043 -8.8679 7.6635 22 7 1.1607 -9.9561 8.4741 23 6 0.6797 -11.0855 7.9178 24 7 0.4084 -12.1552 8.6916 25 8 0.4905 -11.1393 6.7180 26 6 0.7373 -8.5643 6.5492 27 6 -0.0444 -3.2963 2.2653 28 6 0.4860 -2.1866 1.6479 29 1 -0.4850 0.8400 0.0004 30 1 2.6336 -3.7704 -0.4784 31 1 1.6725 -5.7263 0.6546 32 1 -0.1949 -6.6186 1.9120 33 1 -1.2206 -5.5562 2.9057 34 1 1.3820 -5.5597 4.0022 35 1 2.4719 -5.8643 5.4466 36 1 3.8200 -6.4159 7.4265 37 1 3.2041 -8.3241 8.8497 38 1 1.2689 -9.8973 9.4363 39 1 0.0618 -12.9679 8.2913 40 1 0.5631 -12.1136 9.6482 41 1 -0.1251 -9.1666 6.3046 42 1 -0.7964 -3.1778 3.0314 43 1 0.1518 -1.1985 1.9283 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001452266703.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:09 Heat of formation + Delta-G solvation = -24.563784 kcal Electronic energy + Delta-G solvation = -27041.290075 eV Core-core repulsion = 23050.624043 eV Total energy + Delta-G solvation = -3990.666032 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.91761 -39.67347 -38.24756 -37.54085 -35.01388 -34.71226 -34.03489 -33.43890 -31.37925 -30.36627 -29.46057 -29.32402 -26.94422 -24.40057 -23.44875 -23.00711 -21.31324 -21.08439 -20.30461 -20.11221 -18.73560 -18.48938 -17.40149 -17.22932 -16.30908 -15.88929 -15.70278 -15.46985 -15.31616 -14.87249 -14.80628 -14.29382 -14.22952 -13.81397 -13.70720 -13.69136 -13.21889 -12.84315 -12.59904 -12.07425 -12.03600 -11.94470 -11.72954 -11.58799 -11.21308 -11.11630 -10.74882 -10.66425 -10.56833 -10.42864 -10.11205 -9.78811 -9.62059 -9.49376 -9.09946 -9.08350 -8.58784 -8.40909 -7.58111 -7.51285 -7.00598 -4.42484 0.76606 1.19591 2.36648 2.59271 2.71384 2.98170 2.99443 3.01344 3.06968 3.11097 3.67511 3.83058 3.88068 4.01029 4.43734 4.68856 4.74197 5.01741 5.05144 5.26461 5.32826 5.58631 5.68869 5.86639 5.93640 5.96297 6.10250 6.21425 6.26597 6.28917 6.35649 6.37408 6.39005 6.46476 6.77095 6.87080 6.89269 6.94804 7.15844 7.24983 7.43024 7.51388 7.71979 7.94001 7.96647 8.03158 8.16803 8.18483 8.50876 8.55308 8.76507 8.87506 9.95338 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.024765 B = 0.001926 C = 0.001847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.346461 B =14537.870906 C =15156.138875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.765 5.765 2 C 0.087 3.913 3 Si 0.897 3.103 4 H -0.269 1.269 5 H -0.273 1.273 6 H -0.257 1.257 7 C -0.465 4.465 8 H 0.082 0.918 9 C 0.120 3.880 10 C -0.234 4.234 11 C -0.063 4.063 12 C -0.254 4.254 13 C 0.185 3.815 14 N -0.711 5.711 15 C 0.548 3.452 16 O -0.543 6.543 17 C -0.110 4.110 18 C -0.099 4.099 19 C -0.108 4.108 20 C -0.124 4.124 21 C 0.147 3.853 22 N -0.685 5.685 23 C 0.701 3.299 24 N -0.863 5.863 25 O -0.566 6.566 26 C -0.060 4.060 27 C -0.073 4.073 28 C -0.184 4.184 29 H 0.285 0.715 30 H 0.093 0.907 31 H 0.088 0.912 32 H 0.059 0.941 33 H 0.059 0.941 34 H 0.399 0.601 35 H 0.132 0.868 36 H 0.133 0.867 37 H 0.128 0.872 38 H 0.407 0.593 39 H 0.419 0.581 40 H 0.397 0.603 41 H 0.150 0.850 42 H 0.088 0.912 43 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.617 -14.018 20.367 25.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.387 5.387 2 C -0.135 4.135 3 Si 0.721 3.279 4 H -0.194 1.194 5 H -0.198 1.198 6 H -0.181 1.181 7 C -0.493 4.493 8 H 0.100 0.900 9 C 0.118 3.882 10 C -0.254 4.254 11 C -0.082 4.082 12 C -0.256 4.256 13 C 0.063 3.937 14 N -0.362 5.362 15 C 0.334 3.666 16 O -0.422 6.422 17 C -0.114 4.114 18 C -0.118 4.118 19 C -0.126 4.126 20 C -0.145 4.145 21 C 0.053 3.947 22 N -0.335 5.335 23 C 0.400 3.600 24 N -0.431 5.431 25 O -0.442 6.442 26 C -0.081 4.081 27 C -0.092 4.092 28 C -0.204 4.204 29 H 0.096 0.904 30 H 0.111 0.889 31 H 0.106 0.894 32 H 0.077 0.923 33 H 0.078 0.922 34 H 0.235 0.765 35 H 0.149 0.851 36 H 0.151 0.849 37 H 0.145 0.855 38 H 0.242 0.758 39 H 0.251 0.749 40 H 0.225 0.775 41 H 0.168 0.832 42 H 0.106 0.894 43 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 3.542 -14.303 19.082 24.109 hybrid contribution 0.694 0.767 0.889 1.364 sum 4.236 -13.536 19.970 24.495 Atomic orbital electron populations 1.69918 1.08136 1.30052 1.30612 1.25969 0.94377 1.01624 0.91540 0.86484 0.81437 0.80742 0.79283 1.19400 1.19827 1.18068 1.19598 1.05100 0.93674 1.30914 0.89975 1.17597 0.89451 0.91785 0.89394 1.20897 1.07141 0.92538 1.04821 1.20421 0.95654 0.96740 0.95407 1.18911 1.07647 0.92711 1.06350 1.19961 0.93296 0.95606 0.84791 1.46470 1.31887 1.30142 1.27727 1.18288 0.84513 0.80934 0.82832 1.90759 1.28204 1.50820 1.72408 1.19991 0.97199 0.97269 0.96955 1.21413 0.94181 0.99060 0.97196 1.20874 0.99964 0.97158 0.94648 1.21018 0.95096 0.97077 1.01349 1.17311 0.94794 0.88823 0.93787 1.42464 1.68492 1.12587 1.09928 1.15993 0.78212 0.80327 0.85497 1.42948 1.73066 1.15847 1.11256 1.91082 1.57646 1.82661 1.12762 1.21337 0.99108 0.94757 0.92896 1.20499 0.97992 0.92470 0.98224 1.21046 1.02721 0.96899 0.99691 0.90439 0.88928 0.89359 0.92260 0.92238 0.76524 0.85067 0.84878 0.85454 0.75777 0.74859 0.77480 0.83223 0.89428 0.87679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -19.06 11.72 55.55 0.65 -18.41 16 2 C 0.09 2.11 4.80 -17.34 -0.08 2.02 16 3 Si 0.90 17.70 29.66 -169.99 -5.04 12.66 16 4 H -0.27 -5.22 7.11 56.52 0.40 -4.82 16 5 H -0.27 -5.28 7.11 56.52 0.40 -4.87 16 6 H -0.26 -5.06 7.11 56.52 0.40 -4.66 16 7 C -0.47 -11.90 8.96 -37.74 -0.34 -12.24 16 8 H 0.08 2.02 8.01 -52.49 -0.42 1.60 16 9 C 0.12 3.09 5.58 -106.83 -0.60 2.50 16 10 C -0.23 -5.58 9.80 -38.87 -0.38 -5.96 16 11 C -0.06 -1.38 9.67 -39.66 -0.38 -1.76 16 12 C -0.25 -5.36 5.27 -104.33 -0.55 -5.91 16 13 C 0.18 3.50 5.79 -5.19 -0.03 3.47 16 14 N -0.71 -11.98 5.50 -62.42 -0.34 -12.33 16 15 C 0.55 9.71 7.77 -12.32 -0.10 9.61 16 16 O -0.54 -11.58 16.34 5.32 0.09 -11.49 16 17 C -0.11 -1.62 5.87 -104.99 -0.62 -2.23 16 18 C -0.10 -1.14 9.54 -39.16 -0.37 -1.51 16 19 C -0.11 -0.98 10.02 -39.67 -0.40 -1.38 16 20 C -0.12 -1.07 9.96 -39.31 -0.39 -1.46 16 21 C 0.15 1.59 6.24 -83.73 -0.52 1.07 16 22 N -0.69 -5.38 5.34 -14.25 -0.08 -5.46 16 23 C 0.70 6.97 8.66 -86.92 -0.75 6.22 16 24 N -0.86 -4.12 8.88 27.63 0.25 -3.88 16 25 O -0.57 -8.82 14.81 5.29 0.08 -8.74 16 26 C -0.06 -0.87 8.22 -38.98 -0.32 -1.19 16 27 C -0.07 -1.63 9.67 -39.66 -0.38 -2.02 16 28 C -0.18 -4.59 8.79 -38.87 -0.34 -4.93 16 29 H 0.28 6.38 8.30 -40.82 -0.34 6.04 16 30 H 0.09 2.09 8.06 -52.48 -0.42 1.67 16 31 H 0.09 1.73 8.06 -52.49 -0.42 1.31 16 32 H 0.06 1.14 8.08 -51.93 -0.42 0.72 16 33 H 0.06 1.15 8.08 -51.93 -0.42 0.73 16 34 H 0.40 5.99 6.49 -40.82 -0.27 5.72 16 35 H 0.13 1.35 6.40 -52.49 -0.34 1.01 16 36 H 0.13 0.86 8.06 -52.49 -0.42 0.43 16 37 H 0.13 0.68 8.06 -52.49 -0.42 0.26 16 38 H 0.41 1.46 8.84 -40.82 -0.36 1.10 16 39 H 0.42 1.75 8.93 -40.82 -0.36 1.39 16 40 H 0.40 0.42 8.85 -40.82 -0.36 0.06 16 41 H 0.15 2.58 6.03 -52.49 -0.32 2.26 16 42 H 0.09 1.80 8.06 -52.48 -0.42 1.38 16 43 H 0.11 2.69 6.49 -52.48 -0.34 2.34 16 LS Contribution 372.95 15.07 5.62 5.62 Total: -1.00 -33.84 372.95 -10.19 -44.03 By element: Atomic # 1 Polarization: 18.53 SS G_CDS: -4.85 Total: 13.68 kcal Atomic # 6 Polarization: -9.13 SS G_CDS: -6.56 Total: -15.69 kcal Atomic # 7 Polarization: -40.55 SS G_CDS: 0.48 Total: -40.08 kcal Atomic # 8 Polarization: -20.40 SS G_CDS: 0.17 Total: -20.23 kcal Atomic # 14 Polarization: 17.70 SS G_CDS: -5.04 Total: 12.66 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -33.84 -10.19 -44.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001452266703.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.469 kcal (2) G-P(sol) polarization free energy of solvation -33.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds