Wall clock time and date at job start Sat Apr 11 2020 05:39:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30817 * 1 3 3 Si 1.86808 * 120.00071 * 2 1 4 4 H 1.48494 * 109.47155 * 274.98794 * 3 2 1 5 5 H 1.48509 * 109.46848 * 34.98727 * 3 2 1 6 6 H 1.48499 * 109.47090 * 154.98283 * 3 2 1 7 7 C 1.39949 * 120.00158 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00106 * 148.13147 * 7 2 1 9 9 C 1.41391 * 119.99737 * 328.12998 * 7 2 1 10 10 C 1.40712 * 120.24481 * 158.37617 * 9 7 2 11 11 C 1.37620 * 119.74784 * 180.02562 * 10 9 7 12 12 C 1.38634 * 120.24565 * 0.02562 * 11 10 9 13 13 C 1.50697 * 119.74762 * 179.97438 * 12 11 10 14 14 N 1.46503 * 109.47102 * 90.00034 * 13 12 11 15 15 C 1.34776 * 120.00078 * 179.97438 * 14 13 12 16 16 O 1.21552 * 120.00087 * 0.02562 * 15 14 13 17 17 C 1.47860 * 120.00125 * 179.97438 * 15 14 13 18 18 C 1.39621 * 120.11022 * 359.97438 * 17 15 14 19 19 C 1.37972 * 119.99341 * 180.02562 * 18 17 15 20 20 C 1.38260 * 120.22513 * 359.74079 * 19 18 17 21 21 C 1.38937 * 120.22171 * 0.51283 * 20 19 18 22 22 N 1.39979 * 120.00223 * 179.76463 * 21 20 19 23 23 C 1.34770 * 120.00051 * 217.14568 * 22 21 20 24 24 N 1.34779 * 119.99781 * 176.87156 * 23 22 21 25 25 O 1.21583 * 120.00168 * 356.86664 * 23 22 21 26 26 C 1.38641 * 120.00126 * 359.49041 * 21 20 19 27 27 C 1.38630 * 120.50110 * 0.25592 * 12 11 10 28 28 C 1.37618 * 120.24995 * 359.44243 * 27 12 11 29 29 H 0.97000 * 120.00277 * 359.97438 * 1 2 3 30 30 H 1.08005 * 120.12716 * 359.97438 * 10 9 7 31 31 H 1.07997 * 119.87386 * 180.02562 * 11 10 9 32 32 H 1.08996 * 109.47509 * 330.00202 * 13 12 11 33 33 H 1.09004 * 109.47179 * 210.00274 * 13 12 11 34 34 H 0.96993 * 119.99863 * 0.02562 * 14 13 12 35 35 H 1.07996 * 119.99970 * 359.97438 * 18 17 15 36 36 H 1.07996 * 119.88728 * 180.02562 * 19 18 17 37 37 H 1.08002 * 119.88886 * 180.28129 * 20 19 18 38 38 H 0.97000 * 119.99612 * 37.14208 * 22 21 20 39 39 H 0.97004 * 120.00197 * 179.97438 * 24 23 22 40 40 H 0.97000 * 120.00177 * 359.71735 * 24 23 22 41 41 H 1.07998 * 120.10604 * 180.22755 * 26 21 20 42 42 H 1.08005 * 119.87474 * 179.70659 * 27 12 11 43 43 H 1.08004 * 120.12951 * 180.27176 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.3843 2.1073 -1.3947 5 1 1.4963 2.6200 0.8029 6 1 3.5885 1.4121 0.5921 7 6 2.0079 -1.2120 -0.0005 8 1 2.9658 -1.2822 -0.4944 9 6 1.4608 -2.3444 0.6455 10 6 1.8866 -3.6377 0.2903 11 6 1.3469 -4.7328 0.9253 12 6 0.3867 -4.5654 1.9113 13 6 -0.1972 -5.7724 2.5990 14 7 0.6075 -6.0992 3.7789 15 6 0.2710 -7.1487 4.5545 16 8 -0.6999 -7.8245 4.2749 17 6 1.0835 -7.4789 5.7449 18 6 2.2001 -6.7052 6.0674 19 6 2.9568 -7.0157 7.1785 20 6 2.6105 -8.0887 7.9787 21 6 1.5043 -8.8679 7.6635 22 7 1.1607 -9.9561 8.4741 23 6 0.6797 -11.0855 7.9178 24 7 0.4084 -12.1552 8.6916 25 8 0.4905 -11.1393 6.7180 26 6 0.7373 -8.5643 6.5492 27 6 -0.0444 -3.2963 2.2653 28 6 0.4860 -2.1866 1.6479 29 1 -0.4850 0.8400 0.0004 30 1 2.6336 -3.7704 -0.4784 31 1 1.6725 -5.7263 0.6546 32 1 -0.1949 -6.6186 1.9120 33 1 -1.2206 -5.5562 2.9057 34 1 1.3820 -5.5597 4.0022 35 1 2.4719 -5.8643 5.4466 36 1 3.8200 -6.4159 7.4265 37 1 3.2041 -8.3241 8.8497 38 1 1.2689 -9.8973 9.4363 39 1 0.0618 -12.9679 8.2913 40 1 0.5631 -12.1136 9.6482 41 1 -0.1251 -9.1666 6.3046 42 1 -0.7964 -3.1778 3.0314 43 1 0.1518 -1.1985 1.9283 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001452266703.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:08 Heat of formation + Delta-G solvation = -49.356750 kcal Electronic energy + Delta-G solvation = -27042.365178 eV Core-core repulsion = 23050.624043 eV Total energy + Delta-G solvation = -3991.741135 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.76289 -40.88386 -39.56937 -39.02305 -36.38164 -35.87332 -35.17263 -34.62356 -32.54649 -31.81343 -31.20207 -30.34604 -28.58430 -25.88025 -24.38954 -24.19546 -22.92569 -22.12321 -21.86863 -21.47917 -19.61079 -19.32205 -19.25436 -18.06305 -17.35098 -17.20063 -16.89931 -16.55480 -16.43125 -16.29545 -15.86127 -15.66828 -15.47358 -15.40460 -15.13284 -14.65947 -14.56435 -14.28977 -13.90647 -13.83865 -13.49162 -13.33068 -13.01507 -12.83775 -12.77612 -12.65224 -12.38949 -12.17953 -11.63204 -11.52255 -11.32344 -11.30109 -11.10220 -10.88668 -10.75109 -10.19940 -9.87579 -9.43381 -9.36539 -9.21008 -8.80510 -6.33146 -0.17199 0.32642 0.84528 1.12496 1.38054 1.45230 1.56219 1.70927 1.79780 2.08294 2.18245 2.27230 2.68200 2.88890 3.49729 3.67024 3.75949 3.94491 4.12132 4.16753 4.24034 4.28423 4.44176 4.50817 4.53393 4.63167 4.76537 4.91204 5.01809 5.13139 5.20232 5.29684 5.30175 5.34998 5.40684 5.42959 5.45777 5.66842 5.82128 5.90347 5.92167 5.97030 6.05644 6.19457 6.33856 6.57856 6.64252 6.88657 6.96207 6.99952 7.18366 7.53123 8.18816 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.024765 B = 0.001926 C = 0.001847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.346461 B =14537.870906 C =15156.138875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.800 5.800 2 C 0.049 3.951 3 Si 0.973 3.027 4 H -0.261 1.261 5 H -0.264 1.264 6 H -0.256 1.256 7 C -0.502 4.502 8 H 0.080 0.920 9 C 0.092 3.908 10 C -0.249 4.249 11 C -0.062 4.062 12 C -0.239 4.239 13 C 0.193 3.807 14 N -0.703 5.703 15 C 0.546 3.454 16 O -0.590 6.590 17 C -0.137 4.137 18 C -0.101 4.101 19 C -0.098 4.098 20 C -0.101 4.101 21 C 0.143 3.857 22 N -0.669 5.669 23 C 0.693 3.307 24 N -0.837 5.837 25 O -0.630 6.630 26 C -0.086 4.086 27 C -0.073 4.073 28 C -0.204 4.204 29 H 0.294 0.706 30 H 0.098 0.902 31 H 0.112 0.888 32 H 0.057 0.943 33 H 0.055 0.945 34 H 0.410 0.590 35 H 0.142 0.858 36 H 0.172 0.828 37 H 0.174 0.826 38 H 0.430 0.570 39 H 0.423 0.577 40 H 0.419 0.581 41 H 0.111 0.889 42 H 0.104 0.896 43 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.969 -13.990 23.366 28.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.423 5.423 2 C -0.170 4.170 3 Si 0.793 3.207 4 H -0.185 1.185 5 H -0.189 1.189 6 H -0.180 1.180 7 C -0.530 4.530 8 H 0.098 0.902 9 C 0.090 3.910 10 C -0.268 4.268 11 C -0.080 4.080 12 C -0.241 4.241 13 C 0.071 3.929 14 N -0.354 5.354 15 C 0.335 3.665 16 O -0.472 6.472 17 C -0.141 4.141 18 C -0.120 4.120 19 C -0.117 4.117 20 C -0.122 4.122 21 C 0.048 3.952 22 N -0.320 5.320 23 C 0.392 3.608 24 N -0.406 5.406 25 O -0.509 6.509 26 C -0.108 4.108 27 C -0.092 4.092 28 C -0.224 4.224 29 H 0.105 0.895 30 H 0.116 0.884 31 H 0.130 0.870 32 H 0.075 0.925 33 H 0.073 0.927 34 H 0.248 0.752 35 H 0.159 0.841 36 H 0.190 0.810 37 H 0.191 0.809 38 H 0.270 0.730 39 H 0.257 0.743 40 H 0.251 0.749 41 H 0.129 0.871 42 H 0.122 0.878 43 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 5.917 -14.293 22.174 27.036 hybrid contribution -0.057 0.579 0.079 0.587 sum 5.860 -13.714 22.253 26.788 Atomic orbital electron populations 1.69934 1.09606 1.31506 1.31264 1.26795 0.95024 1.04738 0.90474 0.85348 0.79751 0.76019 0.79604 1.18543 1.18869 1.17981 1.19837 1.05550 0.95066 1.32520 0.90190 1.17931 0.90236 0.92786 0.90077 1.21072 1.07740 0.92586 1.05449 1.20663 0.95185 0.97315 0.94878 1.19061 1.06540 0.92885 1.05575 1.19745 0.93273 0.94486 0.85410 1.46218 1.31917 1.30245 1.26989 1.18832 0.84120 0.80072 0.83458 1.90723 1.30408 1.52336 1.73762 1.19760 0.98767 0.99057 0.96471 1.21589 0.93248 0.98790 0.98364 1.21353 1.00125 0.97114 0.93069 1.21504 0.93521 0.95256 1.01893 1.17442 0.95008 0.89701 0.93041 1.42251 1.67703 1.11235 1.10828 1.16309 0.78029 0.81493 0.85016 1.42715 1.71333 1.14504 1.12077 1.91057 1.60250 1.83822 1.15820 1.21156 0.99334 0.95062 0.95207 1.20684 0.97947 0.92343 0.98205 1.21011 1.03748 0.96997 1.00631 0.89545 0.88404 0.86999 0.92490 0.92652 0.75248 0.84059 0.81028 0.80859 0.72996 0.74300 0.74935 0.87145 0.87797 0.89112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -40.69 11.72 21.83 0.26 -40.43 16 2 C 0.05 2.41 4.80 85.26 0.41 2.82 16 3 Si 0.97 36.41 29.66 68.60 2.03 38.44 16 4 H -0.26 -9.36 7.11 99.48 0.71 -8.65 16 5 H -0.26 -9.41 7.11 99.48 0.71 -8.70 16 6 H -0.26 -9.46 7.11 99.48 0.71 -8.75 16 7 C -0.50 -26.36 8.96 23.46 0.21 -26.15 16 8 H 0.08 4.06 8.01 -2.91 -0.02 4.04 16 9 C 0.09 4.86 5.58 -21.29 -0.12 4.74 16 10 C -0.25 -11.99 9.80 22.73 0.22 -11.76 16 11 C -0.06 -2.66 9.67 22.22 0.21 -2.44 16 12 C -0.24 -10.00 5.27 -19.68 -0.10 -10.10 16 13 C 0.19 7.34 5.79 85.63 0.50 7.83 16 14 N -0.70 -23.71 5.50 -469.69 -2.58 -26.30 16 15 C 0.55 20.03 7.77 86.79 0.67 20.70 16 16 O -0.59 -26.67 16.34 -3.88 -0.06 -26.74 16 17 C -0.14 -4.06 5.87 -20.10 -0.12 -4.18 16 18 C -0.10 -2.12 9.54 22.54 0.21 -1.90 16 19 C -0.10 -1.37 10.02 22.21 0.22 -1.15 16 20 C -0.10 -1.29 9.96 22.44 0.22 -1.06 16 21 C 0.14 2.85 6.24 38.10 0.24 3.09 16 22 N -0.67 -9.14 5.34 -317.28 -1.69 -10.84 16 23 C 0.69 13.36 8.66 179.06 1.55 14.91 16 24 N -0.84 -6.62 8.88 -184.75 -1.64 -8.26 16 25 O -0.63 -20.53 14.81 -3.98 -0.06 -20.59 16 26 C -0.09 -2.57 8.22 22.66 0.19 -2.39 16 27 C -0.07 -3.29 9.67 22.22 0.21 -3.07 16 28 C -0.20 -10.42 8.79 22.73 0.20 -10.22 16 29 H 0.29 13.34 8.30 -92.71 -0.77 12.57 16 30 H 0.10 4.48 8.06 -2.91 -0.02 4.46 16 31 H 0.11 4.25 8.06 -2.91 -0.02 4.23 16 32 H 0.06 2.21 8.08 -2.39 -0.02 2.19 16 33 H 0.06 2.16 8.08 -2.38 -0.02 2.14 16 34 H 0.41 11.99 6.49 -92.71 -0.60 11.39 16 35 H 0.14 2.59 6.40 -2.91 -0.02 2.57 16 36 H 0.17 1.15 8.06 -2.91 -0.02 1.13 16 37 H 0.17 0.67 8.06 -2.91 -0.02 0.64 16 38 H 0.43 1.55 8.84 -92.71 -0.82 0.73 16 39 H 0.42 3.05 8.93 -92.71 -0.83 2.22 16 40 H 0.42 -0.30 8.85 -92.71 -0.82 -1.12 16 41 H 0.11 4.18 6.03 -2.91 -0.02 4.16 16 42 H 0.10 4.26 8.06 -2.91 -0.02 4.24 16 43 H 0.09 4.81 6.49 -2.91 -0.02 4.79 16 Total: -1.00 -80.01 372.95 -0.76 -80.77 By element: Atomic # 1 Polarization: 36.21 SS G_CDS: -1.95 Total: 34.26 kcal Atomic # 6 Polarization: -25.27 SS G_CDS: 4.94 Total: -20.33 kcal Atomic # 7 Polarization: -80.16 SS G_CDS: -5.66 Total: -85.82 kcal Atomic # 8 Polarization: -47.20 SS G_CDS: -0.12 Total: -47.32 kcal Atomic # 14 Polarization: 36.41 SS G_CDS: 2.03 Total: 38.44 kcal Total: -80.01 -0.76 -80.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001452266703.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.418 kcal (2) G-P(sol) polarization free energy of solvation -80.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds