Wall clock time and date at job start Sat Apr 11 2020 05:39:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.33386 * 125.20107 * 2 1 4 4 C 1.38424 * 114.92099 * 180.02562 * 3 2 1 5 5 C 1.33384 * 114.92035 * 359.97438 * 4 3 2 6 6 C 1.50703 * 125.20349 * 179.97438 * 5 4 3 7 7 C 1.50701 * 109.47064 * 89.99907 * 6 5 4 8 8 O 1.21280 * 119.99781 * 0.02562 * 7 6 5 9 9 N 1.34780 * 119.99795 * 179.97438 * 7 6 5 10 10 C 1.46497 * 119.99566 * 180.02562 * 9 7 6 11 11 C 1.52997 * 109.46983 * 180.02562 * 10 9 7 12 12 H 1.09000 * 109.47325 * 65.00139 * 11 10 9 13 13 C 1.53006 * 109.47380 * 185.00040 * 11 10 9 14 14 N 1.46905 * 109.47325 * 305.00208 * 11 10 9 15 15 C 1.46898 * 111.00329 * 154.99675 * 14 11 10 16 16 C 1.50694 * 109.47170 * 179.97438 * 15 14 11 17 17 O 1.21298 * 120.00308 * 0.02562 * 16 15 14 18 18 N 1.34776 * 120.00454 * 180.02562 * 16 15 14 19 19 C 1.37088 * 120.00586 * 180.02562 * 18 16 15 20 20 H 1.07999 * 119.99858 * 359.97438 * 19 18 16 21 21 C 1.38956 * 120.00380 * 180.02562 * 19 18 16 22 22 N 1.31409 * 119.99753 * 359.97438 * 21 19 18 23 23 Si 1.86794 * 120.00139 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47323 * 59.99856 * 23 21 19 25 25 H 1.48498 * 109.47159 * 179.97438 * 23 21 19 26 26 H 1.48505 * 109.47009 * 299.99608 * 23 21 19 27 27 S 1.75881 * 109.59619 * 0.24566 * 5 4 3 28 28 H 1.08999 * 109.47643 * 90.00043 * 1 2 3 29 29 H 1.09001 * 109.46764 * 209.99808 * 1 2 3 30 30 H 1.08997 * 109.46991 * 329.99797 * 1 2 3 31 31 H 1.08005 * 122.53979 * 0.02562 * 3 2 1 32 32 H 1.08005 * 122.53856 * 180.02562 * 4 3 2 33 33 H 1.09002 * 109.47152 * 330.00000 * 6 5 4 34 34 H 1.09001 * 109.46980 * 210.00100 * 6 5 4 35 35 H 0.96995 * 120.00011 * 0.02562 * 9 7 6 36 36 H 1.09001 * 109.47487 * 300.00114 * 10 9 7 37 37 H 1.09002 * 109.47182 * 60.00342 * 10 9 7 38 38 H 1.09000 * 109.47301 * 179.97438 * 13 11 10 39 39 H 1.08998 * 109.47136 * 299.99937 * 13 11 10 40 40 H 1.09001 * 109.46558 * 60.00271 * 13 11 10 41 41 H 1.00899 * 110.99799 * 278.95715 * 14 11 10 42 42 H 1.08992 * 109.46897 * 300.00360 * 15 14 11 43 43 H 1.09003 * 109.46664 * 60.00015 * 15 14 11 44 44 H 0.97003 * 119.99301 * 0.02562 * 18 16 15 45 45 H 0.97001 * 120.00029 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2759 1.0899 0.0000 4 6 3.6380 0.8429 -0.0006 5 6 3.9751 -0.4476 -0.0005 6 6 5.3861 -0.9769 -0.0016 7 6 5.8577 -1.1529 1.4189 8 8 5.1204 -0.8763 2.3413 9 7 7.0984 -1.6188 1.6642 10 6 7.5566 -1.7904 3.0451 11 6 8.9891 -2.3277 3.0440 12 1 9.6561 -1.5832 2.6093 13 6 9.4236 -2.6246 4.4807 14 7 9.0487 -3.5618 2.2494 15 6 10.4029 -3.7865 1.7265 16 6 10.4250 -5.0588 0.9192 17 8 9.4121 -5.7138 0.7915 18 7 11.5703 -5.4690 0.3391 19 6 11.5903 -6.6261 -0.3958 20 1 10.6884 -7.2093 -0.5095 21 6 12.7712 -7.0494 -0.9935 22 7 13.8687 -6.3401 -0.8547 23 14 12.7985 -8.6264 -1.9942 24 1 11.8447 -8.5108 -3.1265 25 1 14.1677 -8.8539 -2.5222 26 1 12.4048 -9.7680 -1.1298 27 16 2.5211 -1.4371 -0.0068 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8899 0.5139 31 1 1.8668 2.0895 0.0004 32 1 4.3721 1.6351 -0.0002 33 1 6.0384 -0.2714 -0.5162 34 1 5.4132 -1.9380 -0.5152 35 1 7.6879 -1.8404 0.9265 36 1 7.5297 -0.8295 3.5589 37 1 6.9039 -2.4958 3.5594 38 1 10.4440 -3.0078 4.4799 39 1 9.3794 -1.7089 5.0703 40 1 8.7566 -3.3692 4.9153 41 1 8.7329 -4.3543 2.7882 42 1 10.6912 -2.9483 1.0924 43 1 11.1036 -3.8715 2.5572 44 1 12.3804 -4.9454 0.4415 45 1 14.6930 -6.6353 -1.2723 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001480596454.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:55 Heat of formation + Delta-G solvation = -51.117816 kcal Electronic energy + Delta-G solvation = -25790.164977 eV Core-core repulsion = 21933.791427 eV Total energy + Delta-G solvation = -3856.373549 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 1.90 seconds Orbital eigenvalues (eV) -39.79729 -38.51063 -37.96820 -36.90349 -34.15125 -33.73837 -33.21093 -31.35524 -30.85898 -29.93420 -26.70149 -26.28149 -24.83940 -23.92703 -22.93372 -21.04154 -20.46380 -19.35180 -18.93071 -17.96129 -17.23889 -16.96704 -16.33349 -15.91976 -15.63408 -15.21993 -15.07920 -14.70672 -14.59664 -14.20191 -13.96931 -13.78224 -13.46215 -13.33096 -13.17808 -13.09793 -12.86835 -12.57948 -12.45128 -12.22038 -12.07995 -11.91779 -11.73441 -11.61444 -11.54442 -11.42735 -11.06132 -11.01004 -10.79836 -10.47496 -10.25291 -9.89428 -9.54221 -8.96787 -8.57951 -8.53762 -8.51262 -8.15763 -8.00757 -6.45921 -3.86871 0.85844 1.49985 1.90073 2.59422 2.68392 3.17114 3.23324 3.27456 3.31653 3.85429 4.02366 4.26132 4.48966 4.67993 4.75474 4.84886 4.98375 5.01801 5.05762 5.09459 5.17603 5.23325 5.23901 5.25356 5.40746 5.47148 5.51978 5.60280 5.66627 5.67014 5.73100 5.85201 5.96386 6.01638 6.03520 6.14726 6.21268 6.40733 6.50108 7.09899 7.51011 7.54470 7.60970 8.01468 8.28583 8.56373 9.13527 9.49444 10.00676 10.71550 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013643 B = 0.002019 C = 0.001826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2051.849248 B =13867.567110 C =15327.700890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.186 4.186 3 C -0.139 4.139 4 C -0.127 4.127 5 C -0.155 4.155 6 C -0.073 4.073 7 C 0.512 3.488 8 O -0.540 6.540 9 N -0.712 5.712 10 C 0.135 3.865 11 C 0.068 3.932 12 H 0.084 0.916 13 C -0.181 4.181 14 N -0.664 5.664 15 C 0.050 3.950 16 C 0.439 3.561 17 O -0.583 6.583 18 N -0.562 5.562 19 C -0.300 4.300 20 H 0.102 0.898 21 C 0.023 3.977 22 N -0.901 5.901 23 Si 0.931 3.069 24 H -0.273 1.273 25 H -0.284 1.284 26 H -0.274 1.274 27 S 0.112 5.888 28 H 0.073 0.927 29 H 0.067 0.933 30 H 0.074 0.926 31 H 0.136 0.864 32 H 0.136 0.864 33 H 0.111 0.889 34 H 0.107 0.893 35 H 0.410 0.590 36 H 0.067 0.933 37 H 0.066 0.934 38 H 0.062 0.938 39 H 0.062 0.938 40 H 0.061 0.939 41 H 0.353 0.647 42 H 0.085 0.915 43 H 0.045 0.955 44 H 0.392 0.608 45 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.925 15.959 3.815 22.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.303 4.303 3 C -0.169 4.169 4 C -0.158 4.158 5 C -0.273 4.273 6 C -0.115 4.115 7 C 0.297 3.703 8 O -0.417 6.417 9 N -0.364 5.364 10 C 0.011 3.989 11 C -0.043 4.043 12 H 0.102 0.898 13 C -0.240 4.240 14 N -0.296 5.296 15 C -0.083 4.083 16 C 0.224 3.776 17 O -0.467 6.467 18 N -0.199 5.199 19 C -0.430 4.430 20 H 0.120 0.880 21 C -0.179 4.179 22 N -0.542 5.542 23 Si 0.758 3.242 24 H -0.199 1.199 25 H -0.210 1.210 26 H -0.199 1.199 27 S 0.377 5.623 28 H 0.091 0.909 29 H 0.086 0.914 30 H 0.093 0.907 31 H 0.154 0.846 32 H 0.154 0.846 33 H 0.130 0.870 34 H 0.125 0.875 35 H 0.246 0.754 36 H 0.085 0.915 37 H 0.084 0.916 38 H 0.081 0.919 39 H 0.081 0.919 40 H 0.080 0.920 41 H 0.174 0.826 42 H 0.104 0.896 43 H 0.063 0.937 44 H 0.225 0.775 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -17.437 14.401 3.729 22.920 hybrid contribution 1.871 0.655 0.074 1.984 sum -15.566 15.056 3.803 21.987 Atomic orbital electron populations 1.20314 0.88008 1.03072 1.02561 1.24474 0.99880 0.95968 1.10020 1.19981 0.92835 0.99051 1.05041 1.19972 0.96240 0.95689 1.03851 1.23733 0.97294 0.96524 1.09701 1.20167 0.91678 1.04030 0.95623 1.20404 0.81680 0.77234 0.90959 1.90708 1.54559 1.50432 1.46034 1.45783 1.15234 1.65877 1.09478 1.21307 0.94255 1.00218 0.83166 1.21856 0.95917 0.93786 0.92727 0.89793 1.22436 1.02124 1.02422 0.97062 1.60182 1.23550 1.05112 1.40796 1.21715 0.89848 0.98430 0.98289 1.19802 0.84712 0.87791 0.85294 1.90537 1.33381 1.57827 1.64996 1.41858 1.09601 1.23150 1.45289 1.19646 0.97137 0.99929 1.26293 0.87977 1.25265 0.94833 0.99528 0.98277 1.69599 1.00444 1.39279 1.44923 0.85916 0.77163 0.81329 0.79810 1.19861 1.20973 1.19912 1.84273 0.96234 1.09071 1.72728 0.90870 0.91377 0.90676 0.84641 0.84637 0.87045 0.87479 0.75404 0.91484 0.91613 0.91927 0.91861 0.91982 0.82640 0.89641 0.93724 0.77485 0.91794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.58 10.38 36.01 0.37 -0.21 16 2 C -0.19 -1.89 6.51 -36.00 -0.23 -2.13 16 3 C -0.14 -1.40 10.05 -41.21 -0.41 -1.82 16 4 C -0.13 -1.38 10.05 -41.21 -0.41 -1.79 16 5 C -0.15 -1.79 5.00 -36.00 -0.18 -1.97 16 6 C -0.07 -0.76 6.19 -29.03 -0.18 -0.94 16 7 C 0.51 6.63 7.82 -10.98 -0.09 6.54 16 8 O -0.54 -8.91 16.03 5.56 0.09 -8.82 16 9 N -0.71 -8.31 5.39 -60.30 -0.32 -8.64 16 10 C 0.14 1.53 5.37 -4.04 -0.02 1.51 16 11 C 0.07 0.72 2.75 -67.71 -0.19 0.54 16 12 H 0.08 0.83 7.80 -51.93 -0.40 0.42 16 13 C -0.18 -1.71 9.16 37.16 0.34 -1.37 16 14 N -0.66 -9.37 5.31 -107.99 -0.57 -9.94 16 15 C 0.05 0.79 5.97 -4.98 -0.03 0.76 16 16 C 0.44 9.78 7.82 -10.99 -0.09 9.69 16 17 O -0.58 -15.16 15.78 5.54 0.09 -15.08 16 18 N -0.56 -13.70 5.29 -10.97 -0.06 -13.76 16 19 C -0.30 -8.18 9.68 -14.94 -0.14 -8.32 16 20 H 0.10 2.92 7.16 -52.49 -0.38 2.55 16 21 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 22 N -0.90 -23.98 13.05 55.50 0.72 -23.25 16 23 Si 0.93 20.70 29.55 -169.99 -5.02 15.67 16 24 H -0.27 -6.05 7.11 56.52 0.40 -5.64 16 25 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 26 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 27 S 0.11 1.29 23.31 -107.50 -2.51 -1.22 16 28 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.14 1.07 8.06 -52.48 -0.42 0.64 16 32 H 0.14 1.24 8.06 -52.48 -0.42 0.81 16 33 H 0.11 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.11 1.03 8.14 -51.93 -0.42 0.60 16 35 H 0.41 4.52 8.14 -40.82 -0.33 4.19 16 36 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.06 0.62 7.45 -51.93 -0.39 0.23 16 39 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.06 0.60 8.13 -51.93 -0.42 0.18 16 41 H 0.35 5.46 8.17 -39.29 -0.32 5.14 16 42 H 0.09 1.21 8.05 -51.93 -0.42 0.80 16 43 H 0.04 0.65 7.44 -51.93 -0.39 0.26 16 44 H 0.39 9.12 7.90 -40.82 -0.32 8.80 16 45 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 LS Contribution 397.09 15.07 5.98 5.98 Total: -1.00 -32.96 397.09 -9.69 -42.66 By element: Atomic # 1 Polarization: 22.13 SS G_CDS: -6.73 Total: 15.40 kcal Atomic # 6 Polarization: 2.35 SS G_CDS: -1.36 Total: 1.00 kcal Atomic # 7 Polarization: -55.36 SS G_CDS: -0.23 Total: -55.59 kcal Atomic # 8 Polarization: -24.08 SS G_CDS: 0.18 Total: -23.90 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.67 kcal Atomic # 16 Polarization: 1.29 SS G_CDS: -2.51 Total: -1.22 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -32.96 -9.69 -42.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480596454.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.462 kcal (2) G-P(sol) polarization free energy of solvation -32.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.90 seconds