Wall clock time and date at job start Sat Apr 11 2020 05:39:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.33386 * 125.20107 * 2 1 4 4 C 1.38424 * 114.92099 * 180.02562 * 3 2 1 5 5 C 1.33384 * 114.92035 * 359.97438 * 4 3 2 6 6 C 1.50703 * 125.20349 * 179.97438 * 5 4 3 7 7 C 1.50701 * 109.47064 * 89.99907 * 6 5 4 8 8 O 1.21280 * 119.99781 * 0.02562 * 7 6 5 9 9 N 1.34780 * 119.99795 * 179.97438 * 7 6 5 10 10 C 1.46497 * 119.99566 * 180.02562 * 9 7 6 11 11 C 1.52997 * 109.46983 * 180.02562 * 10 9 7 12 12 H 1.09000 * 109.47325 * 65.00139 * 11 10 9 13 13 C 1.53006 * 109.47380 * 185.00040 * 11 10 9 14 14 N 1.46905 * 109.47325 * 305.00208 * 11 10 9 15 15 C 1.46898 * 111.00329 * 154.99675 * 14 11 10 16 16 C 1.50694 * 109.47170 * 179.97438 * 15 14 11 17 17 O 1.21298 * 120.00308 * 0.02562 * 16 15 14 18 18 N 1.34776 * 120.00454 * 180.02562 * 16 15 14 19 19 C 1.37088 * 120.00586 * 180.02562 * 18 16 15 20 20 H 1.07999 * 119.99858 * 359.97438 * 19 18 16 21 21 C 1.38956 * 120.00380 * 180.02562 * 19 18 16 22 22 N 1.31409 * 119.99753 * 359.97438 * 21 19 18 23 23 Si 1.86794 * 120.00139 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47323 * 59.99856 * 23 21 19 25 25 H 1.48498 * 109.47159 * 179.97438 * 23 21 19 26 26 H 1.48505 * 109.47009 * 299.99608 * 23 21 19 27 27 S 1.75881 * 109.59619 * 0.24566 * 5 4 3 28 28 H 1.08999 * 109.47643 * 90.00043 * 1 2 3 29 29 H 1.09001 * 109.46764 * 209.99808 * 1 2 3 30 30 H 1.08997 * 109.46991 * 329.99797 * 1 2 3 31 31 H 1.08005 * 122.53979 * 0.02562 * 3 2 1 32 32 H 1.08005 * 122.53856 * 180.02562 * 4 3 2 33 33 H 1.09002 * 109.47152 * 330.00000 * 6 5 4 34 34 H 1.09001 * 109.46980 * 210.00100 * 6 5 4 35 35 H 0.96995 * 120.00011 * 0.02562 * 9 7 6 36 36 H 1.09001 * 109.47487 * 300.00114 * 10 9 7 37 37 H 1.09002 * 109.47182 * 60.00342 * 10 9 7 38 38 H 1.09000 * 109.47301 * 179.97438 * 13 11 10 39 39 H 1.08998 * 109.47136 * 299.99937 * 13 11 10 40 40 H 1.09001 * 109.46558 * 60.00271 * 13 11 10 41 41 H 1.00899 * 110.99799 * 278.95715 * 14 11 10 42 42 H 1.08992 * 109.46897 * 300.00360 * 15 14 11 43 43 H 1.09003 * 109.46664 * 60.00015 * 15 14 11 44 44 H 0.97003 * 119.99301 * 0.02562 * 18 16 15 45 45 H 0.97001 * 120.00029 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2759 1.0899 0.0000 4 6 3.6380 0.8429 -0.0006 5 6 3.9751 -0.4476 -0.0005 6 6 5.3861 -0.9769 -0.0016 7 6 5.8577 -1.1529 1.4189 8 8 5.1204 -0.8763 2.3413 9 7 7.0984 -1.6188 1.6642 10 6 7.5566 -1.7904 3.0451 11 6 8.9891 -2.3277 3.0440 12 1 9.6561 -1.5832 2.6093 13 6 9.4236 -2.6246 4.4807 14 7 9.0487 -3.5618 2.2494 15 6 10.4029 -3.7865 1.7265 16 6 10.4250 -5.0588 0.9192 17 8 9.4121 -5.7138 0.7915 18 7 11.5703 -5.4690 0.3391 19 6 11.5903 -6.6261 -0.3958 20 1 10.6884 -7.2093 -0.5095 21 6 12.7712 -7.0494 -0.9935 22 7 13.8687 -6.3401 -0.8547 23 14 12.7985 -8.6264 -1.9942 24 1 11.8447 -8.5108 -3.1265 25 1 14.1677 -8.8539 -2.5222 26 1 12.4048 -9.7680 -1.1298 27 16 2.5211 -1.4371 -0.0068 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8899 0.5139 31 1 1.8668 2.0895 0.0004 32 1 4.3721 1.6351 -0.0002 33 1 6.0384 -0.2714 -0.5162 34 1 5.4132 -1.9380 -0.5152 35 1 7.6879 -1.8404 0.9265 36 1 7.5297 -0.8295 3.5589 37 1 6.9039 -2.4958 3.5594 38 1 10.4440 -3.0078 4.4799 39 1 9.3794 -1.7089 5.0703 40 1 8.7566 -3.3692 4.9153 41 1 8.7329 -4.3543 2.7882 42 1 10.6912 -2.9483 1.0924 43 1 11.1036 -3.8715 2.5572 44 1 12.3804 -4.9454 0.4415 45 1 14.6930 -6.6353 -1.2723 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001480596454.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:49 Heat of formation + Delta-G solvation = -74.681099 kcal Electronic energy + Delta-G solvation = -25791.186757 eV Core-core repulsion = 21933.791427 eV Total energy + Delta-G solvation = -3857.395330 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 5.25 seconds Orbital eigenvalues (eV) -40.80807 -40.14418 -38.81991 -38.06017 -35.95376 -34.96663 -33.99803 -33.25564 -31.97887 -30.70868 -27.94965 -27.44645 -25.83713 -25.38606 -23.71935 -21.98464 -21.41713 -21.08556 -19.90625 -19.71650 -18.23449 -17.88177 -17.65950 -17.09715 -16.74484 -16.50900 -16.30643 -15.99326 -15.90880 -15.52199 -15.18567 -14.84470 -14.53622 -14.32932 -14.14117 -14.01867 -13.68002 -13.66289 -13.54203 -13.39356 -13.30324 -13.05500 -12.81620 -12.75748 -12.65370 -12.52290 -12.41058 -12.27713 -12.12233 -11.88829 -11.61206 -11.48356 -10.94810 -10.32081 -9.99331 -9.96756 -9.39008 -9.36404 -9.31365 -8.45241 -5.93312 0.05588 0.69883 1.09762 1.40333 1.42672 1.52843 1.68003 1.81090 2.08770 2.29628 2.40803 2.91874 3.22623 3.54587 3.67037 3.87016 4.00290 4.02656 4.15179 4.24990 4.33705 4.36916 4.41857 4.50832 4.53577 4.63350 4.66902 4.71186 4.74229 4.79995 4.82008 4.89693 5.00641 5.09878 5.25529 5.27571 5.36380 5.42445 5.54291 5.65911 5.90461 6.11406 6.36269 6.62342 6.65080 7.14987 7.31452 7.59538 8.15086 8.71639 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013643 B = 0.002019 C = 0.001826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2051.849248 B =13867.567110 C =15327.700890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.184 4.184 3 C -0.150 4.150 4 C -0.131 4.131 5 C -0.172 4.172 6 C -0.069 4.069 7 C 0.510 3.490 8 O -0.580 6.580 9 N -0.706 5.706 10 C 0.137 3.863 11 C 0.077 3.923 12 H 0.102 0.898 13 C -0.177 4.177 14 N -0.673 5.673 15 C 0.066 3.934 16 C 0.438 3.562 17 O -0.624 6.624 18 N -0.573 5.573 19 C -0.332 4.332 20 H 0.078 0.922 21 C -0.012 4.012 22 N -0.919 5.919 23 Si 0.990 3.010 24 H -0.272 1.272 25 H -0.271 1.271 26 H -0.273 1.273 27 S 0.066 5.934 28 H 0.086 0.914 29 H 0.068 0.932 30 H 0.091 0.909 31 H 0.159 0.841 32 H 0.152 0.848 33 H 0.140 0.860 34 H 0.111 0.889 35 H 0.415 0.585 36 H 0.077 0.923 37 H 0.048 0.952 38 H 0.062 0.938 39 H 0.081 0.919 40 H 0.055 0.945 41 H 0.344 0.656 42 H 0.111 0.889 43 H 0.067 0.933 44 H 0.397 0.603 45 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.532 17.517 3.707 23.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.302 4.302 3 C -0.179 4.179 4 C -0.161 4.161 5 C -0.290 4.290 6 C -0.111 4.111 7 C 0.296 3.704 8 O -0.460 6.460 9 N -0.357 5.357 10 C 0.012 3.988 11 C -0.032 4.032 12 H 0.120 0.880 13 C -0.236 4.236 14 N -0.305 5.305 15 C -0.066 4.066 16 C 0.225 3.775 17 O -0.510 6.510 18 N -0.211 5.211 19 C -0.462 4.462 20 H 0.096 0.904 21 C -0.212 4.212 22 N -0.560 5.560 23 Si 0.814 3.186 24 H -0.198 1.198 25 H -0.196 1.196 26 H -0.199 1.199 27 S 0.330 5.670 28 H 0.105 0.895 29 H 0.087 0.913 30 H 0.109 0.891 31 H 0.177 0.823 32 H 0.169 0.831 33 H 0.158 0.842 34 H 0.129 0.871 35 H 0.251 0.749 36 H 0.095 0.905 37 H 0.066 0.934 38 H 0.081 0.919 39 H 0.100 0.900 40 H 0.074 0.926 41 H 0.163 0.837 42 H 0.129 0.871 43 H 0.084 0.916 44 H 0.230 0.770 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -17.011 15.984 3.622 23.621 hybrid contribution 1.682 0.231 0.157 1.705 sum -15.329 16.214 3.778 22.631 Atomic orbital electron populations 1.20431 0.86006 1.03889 1.03691 1.24869 1.01183 0.94914 1.09218 1.20306 0.92670 1.00135 1.04827 1.20302 0.97121 0.95823 1.02886 1.23917 0.97461 0.96789 1.10816 1.20217 0.91688 1.05048 0.94125 1.20839 0.81498 0.76425 0.91606 1.90684 1.55601 1.52346 1.47414 1.45804 1.15007 1.65096 1.09833 1.21319 0.94260 1.00253 0.82968 1.21862 0.95772 0.92376 0.93237 0.87962 1.22391 1.01801 1.03198 0.96255 1.60159 1.22556 1.05959 1.41874 1.21572 0.91361 0.95324 0.98322 1.20946 0.83276 0.89055 0.84202 1.90511 1.34701 1.59646 1.66165 1.41923 1.10517 1.22816 1.45818 1.19593 0.96841 1.01446 1.28330 0.90443 1.25986 0.94235 1.02227 0.98775 1.69655 1.00737 1.40331 1.45270 0.85035 0.77615 0.77706 0.78281 1.19765 1.19595 1.19882 1.84373 0.97812 1.11086 1.73712 0.89509 0.91297 0.89056 0.82310 0.83053 0.84201 0.87069 0.74862 0.90503 0.93364 0.91922 0.90014 0.92559 0.83695 0.87132 0.91563 0.76955 0.91364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.06 10.38 71.24 0.74 -0.32 16 2 C -0.18 -3.61 6.51 24.59 0.16 -3.45 16 3 C -0.15 -2.82 10.05 21.22 0.21 -2.61 16 4 C -0.13 -2.70 10.05 21.22 0.21 -2.48 16 5 C -0.17 -3.94 5.00 24.59 0.12 -3.82 16 6 C -0.07 -1.38 6.19 29.10 0.18 -1.20 16 7 C 0.51 12.96 7.82 87.66 0.69 13.65 16 8 O -0.58 -19.25 16.03 -3.03 -0.05 -19.29 16 9 N -0.71 -15.75 5.39 -463.06 -2.50 -18.24 16 10 C 0.14 2.92 5.37 86.38 0.46 3.39 16 11 C 0.08 1.48 2.75 44.92 0.12 1.60 16 12 H 0.10 1.65 7.80 -2.39 -0.02 1.63 16 13 C -0.18 -2.95 9.16 71.98 0.66 -2.29 16 14 N -0.67 -18.07 5.31 -495.58 -2.63 -20.70 16 15 C 0.07 1.97 5.97 85.56 0.51 2.48 16 16 C 0.44 19.45 7.82 87.66 0.69 20.14 16 17 O -0.62 -32.99 15.78 -3.09 -0.05 -33.04 16 18 N -0.57 -28.07 5.29 -306.99 -1.62 -29.69 16 19 C -0.33 -18.38 9.68 84.04 0.81 -17.57 16 20 H 0.08 4.59 7.16 -2.91 -0.02 4.57 16 21 C -0.01 -0.65 5.50 84.93 0.47 -0.18 16 22 N -0.92 -48.40 13.05 21.66 0.28 -48.12 16 23 Si 0.99 42.22 29.55 68.60 2.03 44.25 16 24 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 25 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 26 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 27 S 0.07 1.55 23.31 -56.49 -1.32 0.23 16 28 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.16 2.15 8.06 -2.91 -0.02 2.12 16 32 H 0.15 2.50 8.06 -2.91 -0.02 2.48 16 33 H 0.14 1.90 8.14 -2.39 -0.02 1.88 16 34 H 0.11 2.10 8.14 -2.39 -0.02 2.08 16 35 H 0.41 8.52 8.14 -92.71 -0.75 7.76 16 36 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 37 H 0.05 1.21 8.14 -2.39 -0.02 1.20 16 38 H 0.06 1.07 7.45 -2.39 -0.02 1.05 16 39 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 40 H 0.06 1.01 8.13 -2.39 -0.02 0.99 16 41 H 0.34 10.47 8.17 -89.69 -0.73 9.73 16 42 H 0.11 2.79 8.05 -2.39 -0.02 2.77 16 43 H 0.07 1.73 7.44 -2.39 -0.02 1.71 16 44 H 0.40 18.35 7.90 -92.71 -0.73 17.62 16 45 H 0.28 13.74 8.31 -92.71 -0.77 12.97 16 Total: -1.00 -72.42 397.09 -1.00 -73.42 By element: Atomic # 1 Polarization: 45.03 SS G_CDS: -1.19 Total: 43.85 kcal Atomic # 6 Polarization: 1.30 SS G_CDS: 6.04 Total: 7.33 kcal Atomic # 7 Polarization: -110.28 SS G_CDS: -6.47 Total: -116.75 kcal Atomic # 8 Polarization: -52.24 SS G_CDS: -0.10 Total: -52.34 kcal Atomic # 14 Polarization: 42.22 SS G_CDS: 2.03 Total: 44.25 kcal Atomic # 16 Polarization: 1.55 SS G_CDS: -1.32 Total: 0.23 kcal Total: -72.42 -1.00 -73.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480596454.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.260 kcal (2) G-P(sol) polarization free energy of solvation -72.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.25 seconds