Wall clock time and date at job start Sat Apr 11 2020 05:40:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86796 * 120.00099 * 2 1 4 4 H 1.48500 * 109.47189 * 239.99426 * 3 2 1 5 5 H 1.48499 * 109.47404 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47172 * 120.00021 * 3 2 1 7 7 C 1.38954 * 119.99905 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99797 * 180.02562 * 7 2 1 9 9 N 1.37096 * 119.99799 * 0.02562 * 7 2 1 10 10 C 1.34782 * 119.99486 * 179.97438 * 9 7 2 11 11 O 1.21285 * 120.00410 * 359.97438 * 10 9 7 12 12 C 1.50701 * 119.99749 * 179.97438 * 10 9 7 13 13 N 1.46900 * 109.47457 * 179.97438 * 12 10 9 14 14 C 1.46896 * 111.00179 * 179.97438 * 13 12 10 15 15 C 1.52997 * 109.46908 * 179.97438 * 14 13 12 16 16 H 1.09000 * 109.47140 * 60.00224 * 15 14 13 17 17 O 1.42906 * 109.47485 * 299.99967 * 15 14 13 18 18 C 1.53006 * 109.47164 * 180.02562 * 15 14 13 19 19 N 1.46496 * 109.47070 * 185.00131 * 18 15 14 20 20 C 1.34775 * 119.99828 * 180.02562 * 19 18 15 21 21 O 1.21556 * 120.00338 * 359.97438 * 20 19 18 22 22 C 1.47860 * 120.00096 * 180.02562 * 20 19 18 23 23 C 1.39594 * 120.13070 * 359.71166 * 22 20 19 24 24 C 1.37942 * 119.90435 * 179.77189 * 23 22 20 25 25 C 1.38343 * 120.17385 * 0.51460 * 24 23 22 26 26 C 1.38550 * 120.26546 * 359.74450 * 25 24 23 27 27 F 1.35104 * 119.95334 * 180.02562 * 26 25 24 28 28 C 1.38209 * 120.09340 * 359.97438 * 26 25 24 29 29 H 0.96998 * 119.99880 * 0.02562 * 1 2 3 30 30 H 0.96996 * 120.00308 * 359.97438 * 9 7 2 31 31 H 1.09009 * 109.46915 * 59.99773 * 12 10 9 32 32 H 1.09000 * 109.47298 * 300.00024 * 12 10 9 33 33 H 1.00897 * 110.99688 * 303.95479 * 13 12 10 34 34 H 1.09000 * 109.47037 * 60.00144 * 14 13 12 35 35 H 1.09001 * 109.47271 * 300.00253 * 14 13 12 36 36 H 0.96701 * 113.99492 * 300.00048 * 17 15 14 37 37 H 1.09004 * 109.46579 * 304.99685 * 18 15 14 38 38 H 1.08992 * 109.47046 * 64.99868 * 18 15 14 39 39 H 0.97001 * 120.00404 * 359.97438 * 19 18 15 40 40 H 1.08001 * 120.04656 * 0.03685 * 23 22 20 41 41 H 1.08001 * 119.91918 * 180.23705 * 24 23 22 42 42 H 1.08005 * 119.87058 * 179.76274 * 25 24 23 43 43 H 1.08004 * 120.09015 * 180.02562 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1020 1.6963 -1.2124 5 1 1.2832 2.7465 -0.0006 6 1 3.1019 1.6963 1.2125 7 6 2.0089 -1.2034 0.0005 8 1 3.0889 -1.2034 0.0010 9 7 1.3233 -2.3906 0.0005 10 6 1.9973 -3.5579 0.0005 11 8 3.2101 -3.5579 0.0001 12 6 1.2438 -4.8630 0.0011 13 7 2.1983 -5.9796 0.0004 14 6 1.4980 -7.2709 0.0015 15 6 2.5229 -8.4068 0.0001 16 1 3.1491 -8.3323 0.8891 17 8 3.3404 -8.3094 -1.1680 18 6 1.7935 -9.7518 0.0006 19 7 2.7704 -10.8370 0.1197 20 6 2.3544 -12.1188 0.1408 21 8 1.1687 -12.3744 0.0616 22 6 3.3403 -13.2141 0.2615 23 6 4.7030 -12.9240 0.3477 24 6 5.6184 -13.9492 0.4649 25 6 5.1902 -15.2646 0.4866 26 6 3.8398 -15.5609 0.3961 27 9 3.4286 -16.8477 0.4184 28 6 2.9127 -14.5420 0.2841 29 1 -0.4850 0.8400 -0.0004 30 1 0.3534 -2.3906 0.0005 31 1 0.6167 -4.9208 -0.8887 32 1 0.6174 -4.9205 0.8913 33 1 2.8325 -5.9125 -0.7815 34 1 0.8721 -7.3455 -0.8877 35 1 0.8740 -7.3450 0.8922 36 1 2.8484 -8.3679 -1.9984 37 1 1.1032 -9.7903 0.8433 38 1 1.2374 -9.8639 -0.9300 39 1 3.7166 -10.6331 0.1825 40 1 5.0398 -11.8980 0.3269 41 1 6.6724 -13.7249 0.5354 42 1 5.9114 -16.0637 0.5746 43 1 1.8600 -14.7731 0.2140 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482703463.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:38 Heat of formation + Delta-G solvation = -140.842936 kcal Electronic energy + Delta-G solvation = -27162.568786 eV Core-core repulsion = 22736.091287 eV Total energy + Delta-G solvation = -4426.477499 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.143 amu Computer time = 1.70 seconds Orbital eigenvalues (eV) -49.40112 -40.67652 -38.97341 -38.40906 -37.85761 -35.06960 -34.64583 -33.80140 -32.04978 -31.31299 -31.21413 -30.14235 -27.36141 -25.33728 -24.24642 -23.29396 -22.98475 -21.99672 -20.92529 -19.31156 -18.93394 -17.92160 -17.39484 -16.90948 -16.78276 -16.66990 -16.44398 -16.13125 -15.79194 -15.59453 -15.48902 -14.95407 -14.61213 -14.49529 -14.44383 -14.06005 -13.82258 -13.68086 -13.50320 -13.11580 -12.98795 -12.68588 -12.57676 -12.40893 -11.90711 -11.85298 -11.61629 -11.52938 -11.22237 -11.02080 -10.61198 -10.45122 -10.28359 -10.21104 -9.77238 -9.51892 -9.51253 -9.34577 -8.49377 -8.12083 -7.97575 -6.42872 -3.83832 0.13957 0.57332 2.29078 2.57261 3.18851 3.19437 3.25264 3.29632 3.66403 3.87100 3.90864 4.06140 4.14855 4.15700 4.21636 4.40486 4.46566 4.68568 4.71078 4.73496 4.84841 5.06750 5.09023 5.20603 5.25848 5.31975 5.37922 5.46464 5.52936 5.58416 5.64083 5.70831 5.83129 5.91967 5.93918 6.19939 6.23252 7.01419 7.10290 7.32909 7.53908 7.63231 7.72737 8.04667 8.59847 9.16507 9.52652 10.04150 10.74743 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.040582 B = 0.001413 C = 0.001375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 689.788729 B =19812.100927 C =20360.567979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.023 3.977 3 Si 0.931 3.069 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.301 4.301 8 H 0.103 0.897 9 N -0.563 5.563 10 C 0.440 3.560 11 O -0.582 6.582 12 C 0.050 3.950 13 N -0.663 5.663 14 C 0.031 3.969 15 C 0.098 3.902 16 H 0.117 0.883 17 O -0.553 6.553 18 C 0.088 3.912 19 N -0.715 5.715 20 C 0.558 3.442 21 O -0.534 6.534 22 C -0.105 4.105 23 C -0.096 4.096 24 C -0.096 4.096 25 C -0.129 4.129 26 C 0.092 3.908 27 F -0.135 7.135 28 C -0.097 4.097 29 H 0.272 0.728 30 H 0.392 0.608 31 H 0.043 0.957 32 H 0.086 0.914 33 H 0.356 0.644 34 H 0.033 0.967 35 H 0.083 0.917 36 H 0.374 0.626 37 H 0.082 0.918 38 H 0.074 0.926 39 H 0.406 0.594 40 H 0.137 0.863 41 H 0.142 0.858 42 H 0.141 0.859 43 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.748 -29.122 -0.380 29.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.179 4.179 3 Si 0.758 3.242 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.431 4.431 8 H 0.121 0.879 9 N -0.200 5.200 10 C 0.225 3.775 11 O -0.466 6.466 12 C -0.082 4.082 13 N -0.297 5.297 14 C -0.100 4.100 15 C 0.038 3.962 16 H 0.135 0.865 17 O -0.358 6.358 18 C -0.036 4.036 19 N -0.367 5.367 20 C 0.344 3.656 21 O -0.411 6.411 22 C -0.108 4.108 23 C -0.114 4.114 24 C -0.114 4.114 25 C -0.148 4.148 26 C 0.073 3.927 27 F -0.114 7.114 28 C -0.116 4.116 29 H 0.082 0.918 30 H 0.225 0.775 31 H 0.061 0.939 32 H 0.104 0.896 33 H 0.177 0.823 34 H 0.051 0.949 35 H 0.102 0.898 36 H 0.222 0.778 37 H 0.101 0.899 38 H 0.093 0.907 39 H 0.243 0.757 40 H 0.154 0.846 41 H 0.160 0.840 42 H 0.159 0.841 43 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 6.105 -29.073 0.683 29.714 hybrid contribution -0.765 0.634 -1.208 1.564 sum 5.339 -28.439 -0.525 28.941 Atomic orbital electron populations 1.69603 1.05943 1.28285 1.50480 1.25262 0.95634 0.99727 0.97257 0.85909 0.78755 0.80413 0.79084 1.19917 1.20976 1.19870 1.19666 0.93371 0.82247 1.47770 0.87946 1.41854 1.09187 1.04590 1.64351 1.19780 0.88393 0.84694 0.84614 1.90529 1.13727 1.87024 1.55335 1.21688 0.94317 0.91027 1.01203 1.59963 1.18569 0.99205 1.51991 1.22526 0.95526 0.90339 1.01625 1.22240 0.92970 0.90757 0.90202 0.86548 1.86653 1.37503 1.95941 1.15735 1.22134 0.91869 0.86175 1.03470 1.45763 1.11367 1.05191 1.74420 1.18143 0.88034 0.82644 0.76753 1.90808 1.17031 1.83837 1.49435 1.19745 0.93614 0.93184 1.04238 1.21453 0.91766 1.00367 0.97853 1.21020 1.00551 0.91299 0.98497 1.21417 0.94134 0.98502 1.00793 1.17563 0.92863 0.78726 1.03574 1.91539 1.91064 1.34849 1.93919 1.21245 1.01001 0.90817 0.98555 0.91811 0.77463 0.93893 0.89590 0.82293 0.94928 0.89830 0.77843 0.89929 0.90742 0.75728 0.84567 0.84015 0.84115 0.83310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.37 13.05 55.50 0.72 -23.65 16 2 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 3 Si 0.93 20.93 29.55 -169.99 -5.02 15.91 16 4 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 5 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 6 H -0.27 -6.12 7.11 56.52 0.40 -5.71 16 7 C -0.30 -8.37 9.68 -14.93 -0.14 -8.51 16 8 H 0.10 2.98 7.16 -52.48 -0.38 2.61 16 9 N -0.56 -14.17 5.29 -10.96 -0.06 -14.23 16 10 C 0.44 10.28 7.82 -10.98 -0.09 10.19 16 11 O -0.58 -15.75 15.78 5.55 0.09 -15.66 16 12 C 0.05 0.86 6.17 -4.98 -0.03 0.82 16 13 N -0.66 -10.08 6.12 -115.06 -0.70 -10.78 16 14 C 0.03 0.32 5.39 -3.83 -0.02 0.30 16 15 C 0.10 0.83 3.27 -26.73 -0.09 0.75 16 16 H 0.12 1.08 8.14 -51.93 -0.42 0.66 16 17 O -0.55 -4.99 12.62 -35.23 -0.44 -5.43 16 18 C 0.09 0.68 5.31 -4.04 -0.02 0.66 16 19 N -0.71 -5.40 5.45 -61.25 -0.33 -5.73 16 20 C 0.56 5.40 7.77 -12.32 -0.10 5.31 16 21 O -0.53 -7.08 16.35 5.32 0.09 -6.99 16 22 C -0.10 -0.82 5.87 -104.97 -0.62 -1.44 16 23 C -0.10 -0.52 9.54 -39.18 -0.37 -0.89 16 24 C -0.10 -0.43 10.03 -39.65 -0.40 -0.83 16 25 C -0.13 -0.70 10.02 -39.43 -0.40 -1.09 16 26 C 0.09 0.69 7.29 -39.48 -0.29 0.40 16 27 F -0.14 -1.15 17.26 2.25 0.04 -1.11 16 28 C -0.10 -0.80 9.57 -39.11 -0.37 -1.18 16 29 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 30 H 0.39 9.40 7.90 -40.82 -0.32 9.08 16 31 H 0.04 0.65 8.14 -51.92 -0.42 0.23 16 32 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 33 H 0.36 5.77 7.82 -39.29 -0.31 5.47 16 34 H 0.03 0.30 8.14 -51.93 -0.42 -0.12 16 35 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.37 2.32 9.04 45.56 0.41 2.73 16 37 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 39 H 0.41 2.33 6.51 -40.82 -0.27 2.07 16 40 H 0.14 0.46 6.40 -52.49 -0.34 0.12 16 41 H 0.14 0.28 8.06 -52.49 -0.42 -0.15 16 42 H 0.14 0.47 8.06 -52.48 -0.42 0.05 16 43 H 0.15 1.30 7.65 -52.48 -0.40 0.90 16 LS Contribution 379.94 15.07 5.73 5.73 Total: -1.00 -34.73 379.94 -7.47 -42.20 By element: Atomic # 1 Polarization: 19.28 SS G_CDS: -4.54 Total: 14.74 kcal Atomic # 6 Polarization: 8.03 SS G_CDS: -3.03 Total: 5.00 kcal Atomic # 7 Polarization: -54.01 SS G_CDS: -0.37 Total: -54.38 kcal Atomic # 8 Polarization: -27.82 SS G_CDS: -0.27 Total: -28.09 kcal Atomic # 9 Polarization: -1.15 SS G_CDS: 0.04 Total: -1.11 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -34.73 -7.47 -42.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482703463.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.643 kcal (2) G-P(sol) polarization free energy of solvation -34.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.70 seconds