Wall clock time and date at job start Sat Apr 11 2020 05:40:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38665 * 120.79177 * 2 1 4 4 C 1.38185 * 119.16092 * 179.97438 * 3 2 1 5 5 N 1.31881 * 120.76978 * 0.02562 * 4 3 2 6 6 C 1.31862 * 121.72315 * 359.96041 * 5 4 3 7 7 C 1.38221 * 120.76221 * 0.04192 * 6 5 4 8 8 C 1.50703 * 120.41773 * 180.25125 * 7 6 5 9 9 N 1.46900 * 109.47003 * 259.72395 * 8 7 6 10 10 C 1.46902 * 110.99833 * 180.02562 * 9 8 7 11 11 C 1.52997 * 109.47349 * 179.97438 * 10 9 8 12 12 H 1.08999 * 109.47163 * 305.00170 * 11 10 9 13 13 O 1.42906 * 109.46951 * 64.99722 * 11 10 9 14 14 C 1.52998 * 109.47252 * 184.99776 * 11 10 9 15 15 N 1.46505 * 109.46948 * 180.02562 * 14 11 10 16 16 C 1.34777 * 119.99751 * 180.02562 * 15 14 11 17 17 O 1.21281 * 119.99996 * 359.97438 * 16 15 14 18 18 C 1.50694 * 120.00007 * 180.02562 * 16 15 14 19 19 S 1.80996 * 109.47523 * 179.97438 * 18 16 15 20 20 C 1.76198 * 100.00373 * 179.97438 * 19 18 16 21 21 H 1.07997 * 120.00077 * 359.97438 * 20 19 18 22 22 C 1.38804 * 119.99764 * 180.02562 * 20 19 18 23 23 N 1.31626 * 120.00172 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 119.99513 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47605 * 89.99718 * 24 22 20 26 26 H 1.48506 * 109.47112 * 209.99863 * 24 22 20 27 27 H 1.48504 * 109.47472 * 329.99328 * 24 22 20 28 28 H 1.08993 * 109.47508 * 270.02454 * 1 2 3 29 29 H 1.09007 * 109.47052 * 30.02406 * 1 2 3 30 30 H 1.09001 * 109.47095 * 150.02138 * 1 2 3 31 31 H 1.07998 * 120.41972 * 359.95187 * 3 2 1 32 32 H 1.08011 * 119.61436 * 180.02562 * 4 3 2 33 33 H 1.07993 * 119.61628 * 180.02562 * 6 5 4 34 34 H 1.09000 * 109.46824 * 19.72357 * 8 7 6 35 35 H 1.09003 * 109.47010 * 139.72795 * 8 7 6 36 36 H 1.00904 * 110.99759 * 303.95081 * 9 8 7 37 37 H 1.09002 * 109.47280 * 300.00028 * 10 9 8 38 38 H 1.09008 * 109.47055 * 59.99782 * 10 9 8 39 39 H 0.96703 * 113.99545 * 60.00323 * 13 11 10 40 40 H 1.08999 * 109.47359 * 300.00275 * 14 11 10 41 41 H 1.08999 * 109.47047 * 60.00361 * 14 11 10 42 42 H 0.96998 * 119.99910 * 359.97438 * 15 14 11 43 43 H 1.08999 * 109.46857 * 299.99652 * 18 16 15 44 44 H 1.09005 * 109.47569 * 59.99388 * 18 16 15 45 45 H 0.97002 * 119.99970 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2169 1.1912 0.0000 4 6 3.5982 1.1518 0.0005 5 7 4.2403 -0.0001 0.0005 6 6 3.5983 -1.1518 0.0008 7 6 2.2166 -1.1910 0.0002 8 6 1.4907 -2.5117 0.0062 9 7 1.0391 -2.8284 -1.3553 10 6 0.3252 -4.1118 -1.3879 11 6 -0.1291 -4.4065 -2.8188 12 1 -0.7208 -3.5705 -3.1916 13 8 1.0159 -4.5895 -3.6540 14 6 -0.9788 -5.6788 -2.8323 15 7 -1.4133 -5.9613 -4.2026 16 6 -2.1787 -7.0409 -4.4578 17 8 -2.5074 -7.7788 -3.5531 18 6 -2.6252 -7.3318 -5.8673 19 16 -3.6305 -8.8369 -5.8834 20 6 -4.0057 -8.9360 -7.6021 21 1 -3.6286 -8.1858 -8.2813 22 6 -4.7867 -9.9779 -8.0830 23 7 -5.2475 -10.8915 -7.2550 24 14 -5.1838 -10.0833 -9.9052 25 1 -4.1370 -10.8795 -10.5948 26 1 -6.5040 -10.7385 -10.0871 27 1 -5.2262 -8.7158 -10.4827 28 1 -0.3634 0.0004 1.0276 29 1 -0.3633 0.8898 -0.5142 30 1 -0.3633 -0.8902 -0.5135 31 1 1.6968 2.1377 -0.0008 32 1 4.1584 2.0753 0.0010 33 1 4.1584 -2.0751 0.0012 34 1 2.1634 -3.2943 0.3573 35 1 0.6282 -2.4492 0.6698 36 1 0.4657 -2.0864 -1.7278 37 1 0.9893 -4.9058 -1.0464 38 1 -0.5454 -4.0600 -0.7340 39 1 1.5894 -5.3186 -3.3808 40 1 -0.3871 -6.5149 -2.4595 41 1 -1.8522 -5.5392 -2.1953 42 1 -1.1508 -5.3710 -4.9261 43 1 -3.2163 -6.4957 -6.2411 44 1 -1.7514 -7.4722 -6.5037 45 1 -5.7930 -11.6197 -7.5911 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482708645.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:42 Heat of formation + Delta-G solvation = -89.281207 kcal Electronic energy + Delta-G solvation = -25215.359392 eV Core-core repulsion = 21357.330954 eV Total energy + Delta-G solvation = -3858.028438 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.29785 -40.71105 -39.01150 -36.91021 -35.25566 -34.59841 -34.58309 -32.80397 -31.62944 -29.95149 -28.90408 -27.70250 -26.92783 -24.70205 -23.56612 -22.79677 -22.17837 -21.66427 -19.85342 -18.23773 -17.88724 -17.65959 -17.34804 -17.27092 -16.87969 -16.76319 -16.32369 -16.12074 -15.89806 -15.65843 -15.42419 -15.05437 -14.66065 -14.58469 -14.37301 -14.05049 -13.94486 -13.79824 -13.65914 -13.54094 -13.25522 -13.16577 -13.13648 -12.88505 -12.75224 -12.61156 -12.11891 -11.95327 -11.74098 -11.19003 -11.14233 -10.86869 -10.39535 -10.36352 -10.28229 -10.13647 -9.98904 -9.35235 -8.66637 -8.34749 -6.12776 0.16256 0.31575 1.27123 1.42755 1.47124 1.57757 1.60741 2.22706 2.28361 2.76746 2.99508 3.19474 3.32778 3.53939 3.59582 3.77036 3.79478 3.83572 3.90298 3.98853 4.02513 4.10765 4.14381 4.29690 4.42707 4.49462 4.51810 4.54004 4.63275 4.68536 4.69847 4.74705 4.78245 4.90186 5.06980 5.08341 5.18360 5.39705 5.40807 5.42155 5.80156 5.93871 6.19895 6.33548 6.48838 6.85134 7.06025 7.06731 7.23593 8.74460 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.032485 B = 0.001462 C = 0.001451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 861.726728 B =19144.310737 C =19286.530495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.044 4.044 3 C -0.177 4.177 4 C 0.085 3.915 5 N -0.523 5.523 6 C 0.102 3.898 7 C -0.139 4.139 8 C 0.106 3.894 9 N -0.681 5.681 10 C 0.034 3.966 11 C 0.116 3.884 12 H 0.109 0.891 13 O -0.559 6.559 14 C 0.089 3.911 15 N -0.707 5.707 16 C 0.534 3.466 17 O -0.567 6.567 18 C -0.131 4.131 19 S -0.150 6.150 20 C -0.549 4.549 21 H 0.082 0.918 22 C 0.015 3.985 23 N -0.911 5.911 24 Si 0.998 3.002 25 H -0.268 1.268 26 H -0.277 1.277 27 H -0.259 1.259 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.070 0.930 31 H 0.158 0.842 32 H 0.173 0.827 33 H 0.160 0.840 34 H 0.088 0.912 35 H 0.053 0.947 36 H 0.343 0.657 37 H 0.088 0.912 38 H 0.055 0.945 39 H 0.386 0.614 40 H 0.067 0.933 41 H 0.072 0.928 42 H 0.416 0.584 43 H 0.109 0.891 44 H 0.108 0.892 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.203 26.436 15.743 34.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.052 4.052 3 C -0.196 4.196 4 C -0.071 4.071 5 N -0.232 5.232 6 C -0.055 4.055 7 C -0.142 4.142 8 C -0.023 4.023 9 N -0.313 5.313 10 C -0.096 4.096 11 C 0.056 3.944 12 H 0.126 0.874 13 O -0.366 6.366 14 C -0.036 4.036 15 N -0.361 5.361 16 C 0.320 3.680 17 O -0.445 6.445 18 C -0.282 4.282 19 S 0.077 5.923 20 C -0.696 4.696 21 H 0.100 0.900 22 C -0.190 4.190 23 N -0.547 5.547 24 Si 0.820 3.180 25 H -0.193 1.193 26 H -0.202 1.202 27 H -0.183 1.183 28 H 0.105 0.895 29 H 0.104 0.896 30 H 0.089 0.911 31 H 0.175 0.825 32 H 0.190 0.810 33 H 0.178 0.822 34 H 0.107 0.893 35 H 0.071 0.929 36 H 0.162 0.838 37 H 0.106 0.894 38 H 0.073 0.927 39 H 0.235 0.765 40 H 0.085 0.915 41 H 0.090 0.910 42 H 0.253 0.747 43 H 0.127 0.873 44 H 0.126 0.874 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 15.833 25.310 16.787 34.250 hybrid contribution -1.280 0.392 -1.419 1.950 sum 14.554 25.702 15.368 33.295 Atomic orbital electron populations 1.20928 0.88795 1.04013 1.03731 1.20563 0.97842 0.92528 0.94286 1.22325 0.95387 0.99652 1.02248 1.23171 0.92733 0.96489 0.94745 1.67697 1.42386 0.99438 1.13678 1.22888 0.91793 0.96345 0.94480 1.20765 0.94954 0.95818 1.02628 1.20762 0.98554 0.93106 0.89840 1.60429 1.45388 1.04502 1.21011 1.22553 0.98093 0.93020 0.95928 1.21969 0.86299 0.95238 0.90880 0.87360 1.86590 1.37306 1.57433 1.55273 1.22113 0.99461 0.98752 0.83256 1.45617 1.52257 1.27091 1.11165 1.20023 0.77704 0.80690 0.89626 1.90689 1.56987 1.49241 1.47596 1.23375 1.04268 1.03351 0.97210 1.85521 1.64646 1.29519 1.12570 1.23219 1.38332 1.14969 0.93112 0.89975 1.26112 0.94492 0.94032 1.04382 1.70178 1.33853 1.13366 1.37317 0.84958 0.77790 0.79034 0.76218 1.19326 1.20233 1.18261 0.89492 0.89557 0.91133 0.82469 0.81041 0.82236 0.89348 0.92853 0.83763 0.89410 0.92729 0.76465 0.91453 0.90952 0.74682 0.87319 0.87405 0.91972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.68 9.34 71.24 0.67 -0.01 16 2 C -0.04 -0.47 5.92 -19.67 -0.12 -0.58 16 3 C -0.18 -1.84 9.82 22.36 0.22 -1.62 16 4 C 0.08 1.14 11.18 84.67 0.95 2.09 16 5 N -0.52 -9.58 10.36 -195.84 -2.03 -11.61 16 6 C 0.10 1.60 10.83 84.68 0.92 2.52 16 7 C -0.14 -1.74 5.41 -19.77 -0.11 -1.85 16 8 C 0.11 1.00 5.08 85.56 0.43 1.43 16 9 N -0.68 -7.09 6.43 -517.91 -3.33 -10.42 16 10 C 0.03 0.32 5.32 86.30 0.46 0.78 16 11 C 0.12 1.42 3.23 30.59 0.10 1.52 16 12 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 13 O -0.56 -8.39 13.03 -148.98 -1.94 -10.33 16 14 C 0.09 1.64 5.34 86.38 0.46 2.10 16 15 N -0.71 -16.90 5.45 -463.06 -2.52 -19.42 16 16 C 0.53 19.21 7.85 87.65 0.69 19.90 16 17 O -0.57 -25.57 15.86 -3.03 -0.05 -25.62 16 18 C -0.13 -5.16 6.16 71.23 0.44 -4.72 16 19 S -0.15 -8.29 20.57 -56.49 -1.16 -9.46 16 20 C -0.55 -31.37 9.50 67.96 0.65 -30.72 16 21 H 0.08 4.37 7.80 -2.91 -0.02 4.34 16 22 C 0.01 0.83 5.49 84.86 0.47 1.30 16 23 N -0.91 -55.82 13.22 21.65 0.29 -55.54 16 24 Si 1.00 43.53 29.55 68.60 2.03 45.56 16 25 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 26 H -0.28 -11.75 7.11 99.48 0.71 -11.04 16 27 H -0.26 -10.60 7.11 99.48 0.71 -9.89 16 28 H 0.09 0.38 8.14 -2.39 -0.02 0.36 16 29 H 0.09 0.33 8.10 -2.38 -0.02 0.31 16 30 H 0.07 0.37 5.44 -2.39 -0.01 0.36 16 31 H 0.16 0.77 8.06 -2.91 -0.02 0.75 16 32 H 0.17 1.43 8.06 -2.91 -0.02 1.41 16 33 H 0.16 2.08 8.04 -2.91 -0.02 2.06 16 34 H 0.09 0.78 8.02 -2.39 -0.02 0.76 16 35 H 0.05 0.40 7.39 -2.39 -0.02 0.38 16 36 H 0.34 3.41 7.05 -89.69 -0.63 2.78 16 37 H 0.09 0.77 8.14 -2.39 -0.02 0.76 16 38 H 0.05 0.43 8.14 -2.38 -0.02 0.41 16 39 H 0.39 4.14 9.05 -74.06 -0.67 3.47 16 40 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 41 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 42 H 0.42 7.98 8.35 -92.71 -0.77 7.21 16 43 H 0.11 3.87 8.14 -2.40 -0.02 3.85 16 44 H 0.11 3.88 8.14 -2.39 -0.02 3.86 16 45 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 Total: -1.00 -80.99 395.06 -3.54 -84.53 By element: Atomic # 1 Polarization: 21.21 SS G_CDS: -1.04 Total: 20.16 kcal Atomic # 6 Polarization: -14.08 SS G_CDS: 6.22 Total: -7.87 kcal Atomic # 7 Polarization: -89.38 SS G_CDS: -7.59 Total: -96.98 kcal Atomic # 8 Polarization: -33.96 SS G_CDS: -1.99 Total: -35.95 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.56 kcal Atomic # 16 Polarization: -8.29 SS G_CDS: -1.16 Total: -9.46 kcal Total: -80.99 -3.54 -84.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482708645.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.749 kcal (2) G-P(sol) polarization free energy of solvation -80.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds