Wall clock time and date at job start Sat Apr 11 2020 05:41:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86802 * 119.99810 * 2 1 4 4 H 1.48499 * 109.47150 * 239.99542 * 3 2 1 5 5 H 1.48502 * 109.47393 * 0.02562 * 3 2 1 6 6 H 1.48508 * 109.46804 * 119.99732 * 3 2 1 7 7 C 1.38810 * 119.99595 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99487 * 196.71252 * 7 2 1 9 9 N 1.36934 * 120.00566 * 16.71484 * 7 2 1 10 10 C 1.46920 * 120.63233 * 209.99635 * 9 7 2 11 11 C 1.53195 * 108.77686 * 233.62663 * 10 9 7 12 12 C 1.53040 * 109.31053 * 305.36670 * 11 10 9 13 13 C 1.53037 * 109.54130 * 61.36403 * 12 11 10 14 14 C 1.53002 * 109.49851 * 178.68444 * 13 12 11 15 15 O 1.42898 * 109.46793 * 185.45736 * 14 13 12 16 16 N 1.46499 * 109.50082 * 58.61355 * 13 12 11 17 17 C 1.34786 * 119.99522 * 57.99053 * 16 13 12 18 18 O 1.21283 * 119.99684 * 5.10686 * 17 16 13 19 19 C 1.50697 * 119.99791 * 185.10238 * 17 16 13 20 20 C 1.53004 * 109.46790 * 180.02562 * 19 17 16 21 21 C 1.50697 * 109.46790 * 179.97438 * 20 19 17 22 22 C 1.33647 * 122.75048 * 124.99747 * 21 20 19 23 23 S 1.76192 * 107.92509 * 179.97438 * 22 21 20 24 24 C 1.70979 * 90.28342 * 0.02562 * 23 22 21 25 25 N 1.29026 * 110.16682 * 359.72920 * 24 23 22 26 26 C 1.46934 * 120.62728 * 30.01246 * 9 7 2 27 27 H 0.97002 * 119.99842 * 0.02562 * 1 2 3 28 28 H 1.09003 * 109.58879 * 113.84032 * 10 9 7 29 29 H 1.09001 * 109.70228 * 353.48365 * 10 9 7 30 30 H 1.08994 * 109.50150 * 185.41071 * 11 10 9 31 31 H 1.08998 * 109.49329 * 65.31204 * 11 10 9 32 32 H 1.09004 * 109.46041 * 301.34291 * 12 11 10 33 33 H 1.08997 * 109.45770 * 181.38493 * 12 11 10 34 34 H 1.08999 * 109.46821 * 65.46256 * 14 13 12 35 35 H 1.08995 * 109.46544 * 305.45885 * 14 13 12 36 36 H 0.96700 * 113.99649 * 179.97438 * 15 14 13 37 37 H 0.96989 * 120.00751 * 237.99341 * 16 13 12 38 38 H 1.09000 * 109.47071 * 300.00085 * 19 17 16 39 39 H 1.08996 * 109.47270 * 60.00105 * 19 17 16 40 40 H 1.09000 * 109.47026 * 299.99675 * 20 19 17 41 41 H 1.08996 * 109.47486 * 59.99799 * 20 19 17 42 42 H 1.07997 * 126.03587 * 359.97438 * 22 21 20 43 43 H 1.08006 * 124.91614 * 180.02562 * 24 23 22 44 44 H 1.08991 * 109.58667 * 6.58852 * 26 9 7 45 45 H 1.08999 * 109.58053 * 246.15714 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6964 -1.2124 5 1 1.2852 2.7465 0.0006 6 1 3.1039 1.6964 1.2126 7 6 2.0102 -1.2022 0.0005 8 1 3.0560 -1.2218 0.2695 9 7 1.3690 -2.3632 -0.3400 10 6 1.7891 -3.6474 0.2369 11 6 2.0632 -4.6338 -0.9027 12 6 0.8287 -4.7229 -1.8028 13 6 0.5392 -3.3493 -2.4121 14 6 -0.6754 -3.4467 -3.3374 15 8 -0.8684 -2.1971 -4.0032 16 7 1.7035 -2.8993 -3.1792 17 6 2.1722 -3.6505 -4.1954 18 8 1.5765 -4.6510 -4.5347 19 6 3.4362 -3.2472 -4.9099 20 6 3.7443 -4.2616 -6.0131 21 6 5.0079 -3.8579 -6.7280 22 6 6.0566 -4.6757 -6.8603 23 16 7.3072 -3.8140 -7.7535 24 6 6.2960 -2.4393 -7.8596 25 7 5.1675 -2.6713 -7.2785 26 6 0.2478 -2.3483 -1.2896 27 1 -0.4850 0.8401 -0.0004 28 1 0.9967 -4.0379 0.8755 29 1 2.6962 -3.5069 0.8247 30 1 2.2827 -5.6174 -0.4876 31 1 2.9153 -4.2867 -1.4871 32 1 -0.0286 -5.0463 -1.2124 33 1 1.0122 -5.4427 -2.6005 34 1 -1.5616 -3.6858 -2.7496 35 1 -0.5071 -4.2301 -4.0764 36 1 -1.6229 -2.1861 -4.6079 37 1 2.1370 -2.0610 -2.9558 38 1 3.3045 -2.2594 -5.3515 39 1 4.2624 -3.2203 -4.1995 40 1 3.8758 -5.2495 -5.5718 41 1 2.9180 -4.2881 -6.7234 42 1 6.1253 -5.6864 -6.4858 43 1 6.5614 -1.5128 -8.3471 44 1 0.1387 -1.3489 -1.7105 45 1 -0.6702 -2.6329 -0.7754 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484450802.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:26 Heat of formation + Delta-G solvation = -22.025524 kcal Electronic energy + Delta-G solvation = -28359.958290 eV Core-core repulsion = 24504.846277 eV Total energy + Delta-G solvation = -3855.112013 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.21804 -39.72530 -37.43671 -35.84838 -33.71560 -33.36551 -32.47926 -30.55950 -29.92317 -29.35075 -25.71256 -25.40450 -25.03542 -24.10699 -22.22416 -20.85704 -19.89491 -19.68091 -18.59077 -18.03369 -17.00927 -16.71534 -16.58981 -15.91397 -15.34165 -15.19008 -14.70519 -14.50418 -14.09507 -13.90997 -13.77908 -13.54133 -13.42348 -13.15842 -12.90747 -12.82463 -12.36207 -12.28945 -11.91473 -11.84829 -11.60428 -11.37909 -11.12183 -10.97690 -10.93828 -10.71668 -10.45648 -10.22345 -9.97243 -9.84451 -9.80313 -9.67318 -9.58734 -9.52326 -9.04792 -8.82687 -8.50442 -8.27796 -6.67334 -5.81787 -3.26677 0.52479 1.19268 1.52052 2.61789 3.18131 3.36936 3.43766 3.43888 3.79689 4.05655 4.47018 4.72414 4.84929 4.97084 5.09603 5.17091 5.28985 5.34116 5.45302 5.48050 5.62980 5.66348 5.74534 5.86677 5.89612 5.93321 6.00122 6.06626 6.15107 6.19630 6.35195 6.41253 6.51231 6.53386 6.69245 6.83521 6.99154 7.10917 7.36423 7.54404 7.61400 7.78355 8.11300 8.27671 8.43488 8.84147 9.17597 9.80708 10.39376 11.26329 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011216 B = 0.003374 C = 0.002987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2495.812626 B = 8296.896091 C = 9372.783384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.009 3.991 3 Si 0.900 3.100 4 H -0.283 1.283 5 H -0.291 1.291 6 H -0.283 1.283 7 C -0.262 4.262 8 H 0.064 0.936 9 N -0.589 5.589 10 C 0.143 3.857 11 C -0.128 4.128 12 C -0.120 4.120 13 C 0.157 3.843 14 C 0.069 3.931 15 O -0.560 6.560 16 N -0.685 5.685 17 C 0.515 3.485 18 O -0.562 6.562 19 C -0.134 4.134 20 C -0.024 4.024 21 C 0.071 3.929 22 C -0.254 4.254 23 S 0.102 5.898 24 C 0.025 3.975 25 N -0.463 5.463 26 C 0.177 3.823 27 H 0.255 0.745 28 H 0.016 0.984 29 H 0.052 0.948 30 H 0.049 0.951 31 H 0.056 0.944 32 H 0.060 0.940 33 H 0.071 0.929 34 H 0.042 0.958 35 H 0.059 0.941 36 H 0.367 0.633 37 H 0.408 0.592 38 H 0.097 0.903 39 H 0.088 0.912 40 H 0.086 0.914 41 H 0.087 0.913 42 H 0.178 0.822 43 H 0.199 0.801 44 H 0.099 0.901 45 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.257 -8.804 -13.945 18.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.191 4.191 3 Si 0.730 3.270 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.209 1.209 7 C -0.391 4.391 8 H 0.082 0.918 9 N -0.311 5.311 10 C 0.017 3.983 11 C -0.167 4.167 12 C -0.158 4.158 13 C 0.069 3.931 14 C -0.010 4.010 15 O -0.363 6.363 16 N -0.334 5.334 17 C 0.301 3.699 18 O -0.443 6.443 19 C -0.174 4.174 20 C -0.065 4.065 21 C -0.060 4.060 22 C -0.393 4.393 23 S 0.354 5.646 24 C -0.274 4.274 25 N -0.177 5.177 26 C 0.050 3.950 27 H 0.065 0.935 28 H 0.034 0.966 29 H 0.071 0.929 30 H 0.068 0.932 31 H 0.075 0.925 32 H 0.079 0.921 33 H 0.089 0.911 34 H 0.060 0.940 35 H 0.077 0.923 36 H 0.212 0.788 37 H 0.243 0.757 38 H 0.116 0.884 39 H 0.106 0.894 40 H 0.104 0.896 41 H 0.106 0.894 42 H 0.195 0.805 43 H 0.216 0.784 44 H 0.117 0.883 45 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 9.869 -8.964 -14.108 19.411 hybrid contribution -0.595 0.960 0.258 1.158 sum 9.274 -8.004 -13.850 18.490 Atomic orbital electron populations 1.70004 1.05286 1.25810 1.52824 1.25093 0.95213 0.98426 1.00325 0.86416 0.78967 0.83493 0.78128 1.20908 1.21637 1.20934 1.19084 0.92403 0.84607 1.43029 0.91792 1.43995 1.37768 1.02086 1.47280 1.20959 0.97566 0.86978 0.92833 1.21917 0.97563 0.98770 0.98427 1.21721 0.98647 0.96453 0.99014 1.21189 0.83454 0.96614 0.91871 1.22603 0.96981 0.86090 0.95319 1.86565 1.53123 1.34732 1.61895 1.45829 1.31172 1.24624 1.31731 1.20427 0.85917 0.83463 0.80052 1.90561 1.60102 1.27421 1.66193 1.21548 0.96620 1.01311 0.97954 1.19903 0.91797 0.98771 0.96020 1.20494 0.97632 0.88449 0.99420 1.26886 0.96776 1.06110 1.09483 1.84006 1.20936 1.08591 1.51081 1.28442 0.92409 1.03429 1.03094 1.66136 1.21011 1.20091 1.10425 1.20971 0.89429 0.97999 0.86597 0.93453 0.96565 0.92922 0.93237 0.92507 0.92146 0.91082 0.94028 0.92281 0.78829 0.75670 0.88420 0.89350 0.89556 0.89420 0.80477 0.78427 0.88335 0.95189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.45 11.33 55.49 0.63 -24.82 16 2 C 0.01 0.25 4.90 -17.43 -0.09 0.16 16 3 Si 0.90 21.22 29.59 -169.99 -5.03 16.19 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 7 C -0.26 -6.87 9.56 -15.06 -0.14 -7.02 16 8 H 0.06 1.66 7.88 -52.49 -0.41 1.24 16 9 N -0.59 -14.10 2.90 -172.32 -0.50 -14.60 16 10 C 0.14 2.96 6.51 -3.71 -0.02 2.94 16 11 C -0.13 -2.28 5.93 -26.61 -0.16 -2.44 16 12 C -0.12 -2.16 4.44 -26.69 -0.12 -2.28 16 13 C 0.16 3.02 0.45 -131.70 -0.06 2.96 16 14 C 0.07 1.24 5.66 37.16 0.21 1.45 16 15 O -0.56 -10.03 13.08 -35.23 -0.46 -10.49 16 16 N -0.68 -12.62 3.94 -47.49 -0.19 -12.81 16 17 C 0.52 8.71 7.19 -10.98 -0.08 8.63 16 18 O -0.56 -10.40 12.30 5.56 0.07 -10.33 16 19 C -0.13 -1.87 5.61 -27.88 -0.16 -2.02 16 20 C -0.02 -0.31 5.00 -27.88 -0.14 -0.45 16 21 C 0.07 0.85 6.07 -84.22 -0.51 0.34 16 22 C -0.25 -2.47 11.07 29.12 0.32 -2.14 16 23 S 0.10 0.82 23.22 -107.50 -2.50 -1.68 16 24 C 0.02 0.23 12.23 51.58 0.63 0.86 16 25 N -0.46 -5.73 10.35 -11.89 -0.12 -5.85 16 26 C 0.18 4.09 3.84 -3.70 -0.01 4.07 16 27 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 28 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.05 1.07 7.94 -51.93 -0.41 0.66 16 30 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.06 1.05 7.48 -51.93 -0.39 0.66 16 32 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.07 1.29 6.24 -51.93 -0.32 0.97 16 34 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.06 1.06 6.33 -51.93 -0.33 0.73 16 36 H 0.37 4.75 9.12 45.56 0.42 5.17 16 37 H 0.41 7.98 8.48 -40.82 -0.35 7.64 16 38 H 0.10 1.40 8.08 -51.93 -0.42 0.98 16 39 H 0.09 1.18 8.14 -51.93 -0.42 0.75 16 40 H 0.09 1.03 7.99 -51.93 -0.41 0.61 16 41 H 0.09 1.18 8.10 -51.93 -0.42 0.76 16 42 H 0.18 1.36 8.06 -52.49 -0.42 0.93 16 43 H 0.20 1.19 8.06 -52.48 -0.42 0.77 16 44 H 0.10 2.60 6.06 -51.93 -0.31 2.29 16 45 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 373.47 15.07 5.63 5.63 Total: -1.00 -31.53 373.47 -8.68 -40.21 By element: Atomic # 1 Polarization: 19.36 SS G_CDS: -5.88 Total: 13.48 kcal Atomic # 6 Polarization: 5.39 SS G_CDS: -0.33 Total: 5.07 kcal Atomic # 7 Polarization: -57.90 SS G_CDS: -0.18 Total: -58.08 kcal Atomic # 8 Polarization: -20.42 SS G_CDS: -0.39 Total: -20.82 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.03 Total: 16.19 kcal Atomic # 16 Polarization: 0.82 SS G_CDS: -2.50 Total: -1.68 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -31.53 -8.68 -40.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484450802.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.184 kcal (2) G-P(sol) polarization free energy of solvation -31.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds