Wall clock time and date at job start Sat Apr 11 2020 05:41:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86802 * 119.99810 * 2 1 4 4 H 1.48499 * 109.47150 * 239.99542 * 3 2 1 5 5 H 1.48502 * 109.47393 * 0.02562 * 3 2 1 6 6 H 1.48508 * 109.46804 * 119.99732 * 3 2 1 7 7 C 1.38810 * 119.99595 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99487 * 196.71252 * 7 2 1 9 9 N 1.36934 * 120.00566 * 16.71484 * 7 2 1 10 10 C 1.46920 * 120.63233 * 209.99635 * 9 7 2 11 11 C 1.53195 * 108.77686 * 233.62663 * 10 9 7 12 12 C 1.53040 * 109.31053 * 305.36670 * 11 10 9 13 13 C 1.53037 * 109.54130 * 61.36403 * 12 11 10 14 14 C 1.53002 * 109.49851 * 178.68444 * 13 12 11 15 15 O 1.42898 * 109.46793 * 185.45736 * 14 13 12 16 16 N 1.46499 * 109.50082 * 58.61355 * 13 12 11 17 17 C 1.34786 * 119.99522 * 57.99053 * 16 13 12 18 18 O 1.21283 * 119.99684 * 5.10686 * 17 16 13 19 19 C 1.50697 * 119.99791 * 185.10238 * 17 16 13 20 20 C 1.53004 * 109.46790 * 180.02562 * 19 17 16 21 21 C 1.50697 * 109.46790 * 179.97438 * 20 19 17 22 22 C 1.33647 * 122.75048 * 124.99747 * 21 20 19 23 23 S 1.76192 * 107.92509 * 179.97438 * 22 21 20 24 24 C 1.70979 * 90.28342 * 0.02562 * 23 22 21 25 25 N 1.29026 * 110.16682 * 359.72920 * 24 23 22 26 26 C 1.46934 * 120.62728 * 30.01246 * 9 7 2 27 27 H 0.97002 * 119.99842 * 0.02562 * 1 2 3 28 28 H 1.09003 * 109.58879 * 113.84032 * 10 9 7 29 29 H 1.09001 * 109.70228 * 353.48365 * 10 9 7 30 30 H 1.08994 * 109.50150 * 185.41071 * 11 10 9 31 31 H 1.08998 * 109.49329 * 65.31204 * 11 10 9 32 32 H 1.09004 * 109.46041 * 301.34291 * 12 11 10 33 33 H 1.08997 * 109.45770 * 181.38493 * 12 11 10 34 34 H 1.08999 * 109.46821 * 65.46256 * 14 13 12 35 35 H 1.08995 * 109.46544 * 305.45885 * 14 13 12 36 36 H 0.96700 * 113.99649 * 179.97438 * 15 14 13 37 37 H 0.96989 * 120.00751 * 237.99341 * 16 13 12 38 38 H 1.09000 * 109.47071 * 300.00085 * 19 17 16 39 39 H 1.08996 * 109.47270 * 60.00105 * 19 17 16 40 40 H 1.09000 * 109.47026 * 299.99675 * 20 19 17 41 41 H 1.08996 * 109.47486 * 59.99799 * 20 19 17 42 42 H 1.07997 * 126.03587 * 359.97438 * 22 21 20 43 43 H 1.08006 * 124.91614 * 180.02562 * 24 23 22 44 44 H 1.08991 * 109.58667 * 6.58852 * 26 9 7 45 45 H 1.08999 * 109.58053 * 246.15714 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6964 -1.2124 5 1 1.2852 2.7465 0.0006 6 1 3.1039 1.6964 1.2126 7 6 2.0102 -1.2022 0.0005 8 1 3.0560 -1.2218 0.2695 9 7 1.3690 -2.3632 -0.3400 10 6 1.7891 -3.6474 0.2369 11 6 2.0632 -4.6338 -0.9027 12 6 0.8287 -4.7229 -1.8028 13 6 0.5392 -3.3493 -2.4121 14 6 -0.6754 -3.4467 -3.3374 15 8 -0.8684 -2.1971 -4.0032 16 7 1.7035 -2.8993 -3.1792 17 6 2.1722 -3.6505 -4.1954 18 8 1.5765 -4.6510 -4.5347 19 6 3.4362 -3.2472 -4.9099 20 6 3.7443 -4.2616 -6.0131 21 6 5.0079 -3.8579 -6.7280 22 6 6.0566 -4.6757 -6.8603 23 16 7.3072 -3.8140 -7.7535 24 6 6.2960 -2.4393 -7.8596 25 7 5.1675 -2.6713 -7.2785 26 6 0.2478 -2.3483 -1.2896 27 1 -0.4850 0.8401 -0.0004 28 1 0.9967 -4.0379 0.8755 29 1 2.6962 -3.5069 0.8247 30 1 2.2827 -5.6174 -0.4876 31 1 2.9153 -4.2867 -1.4871 32 1 -0.0286 -5.0463 -1.2124 33 1 1.0122 -5.4427 -2.6005 34 1 -1.5616 -3.6858 -2.7496 35 1 -0.5071 -4.2301 -4.0764 36 1 -1.6229 -2.1861 -4.6079 37 1 2.1370 -2.0610 -2.9558 38 1 3.3045 -2.2594 -5.3515 39 1 4.2624 -3.2203 -4.1995 40 1 3.8758 -5.2495 -5.5718 41 1 2.9180 -4.2881 -6.7234 42 1 6.1253 -5.6864 -6.4858 43 1 6.5614 -1.5128 -8.3471 44 1 0.1387 -1.3489 -1.7105 45 1 -0.6702 -2.6329 -0.7754 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484450802.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:25 Heat of formation + Delta-G solvation = -44.708425 kcal Electronic energy + Delta-G solvation = -28360.941894 eV Core-core repulsion = 24504.846277 eV Total energy + Delta-G solvation = -3856.095617 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.45432 -40.74252 -38.94829 -37.35933 -35.37924 -34.45855 -34.11416 -32.06856 -31.54766 -30.45185 -27.30847 -26.63654 -26.55594 -25.06144 -23.98101 -22.37418 -21.37498 -20.48239 -20.07300 -18.81096 -18.78590 -18.19077 -17.97660 -16.95724 -16.81535 -16.38522 -16.28407 -15.81364 -15.67247 -15.25012 -15.13191 -14.78991 -14.73800 -14.34065 -14.15073 -14.11446 -13.99864 -13.72371 -13.44893 -13.08629 -12.95883 -12.82672 -12.72637 -12.51704 -12.40782 -12.24554 -11.99564 -11.95381 -11.67295 -11.47091 -11.19246 -11.03480 -10.57443 -10.52414 -10.38520 -10.34311 -9.75543 -9.69852 -8.63632 -7.85384 -5.32489 -0.17544 0.53419 0.81845 1.48738 1.51158 1.57020 1.80705 1.83415 2.43287 2.52684 3.29468 3.33417 3.36861 3.67193 3.81944 4.03276 4.10943 4.15625 4.18880 4.26556 4.36603 4.38612 4.46193 4.50110 4.59467 4.62647 4.70980 4.82542 4.85774 4.96412 4.98761 5.01639 5.06948 5.13363 5.21899 5.26316 5.34074 5.50345 5.63569 5.73427 5.81636 6.41603 6.81137 6.82974 6.93628 7.16094 7.42743 7.86039 8.40540 9.20402 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011216 B = 0.003374 C = 0.002987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2495.812626 B = 8296.896091 C = 9372.783384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.040 4.040 3 Si 0.960 3.040 4 H -0.276 1.276 5 H -0.299 1.299 6 H -0.277 1.277 7 C -0.263 4.263 8 H 0.067 0.933 9 N -0.602 5.602 10 C 0.140 3.860 11 C -0.115 4.115 12 C -0.114 4.114 13 C 0.160 3.840 14 C 0.075 3.925 15 O -0.579 6.579 16 N -0.689 5.689 17 C 0.517 3.483 18 O -0.576 6.576 19 C -0.122 4.122 20 C -0.016 4.016 21 C 0.048 3.952 22 C -0.259 4.259 23 S 0.157 5.843 24 C 0.015 3.985 25 N -0.503 5.503 26 C 0.193 3.807 27 H 0.249 0.751 28 H 0.013 0.987 29 H 0.055 0.945 30 H 0.078 0.922 31 H 0.052 0.948 32 H 0.065 0.935 33 H 0.075 0.925 34 H 0.049 0.951 35 H 0.062 0.938 36 H 0.387 0.613 37 H 0.401 0.599 38 H 0.092 0.908 39 H 0.097 0.903 40 H 0.092 0.908 41 H 0.072 0.928 42 H 0.196 0.804 43 H 0.225 0.775 44 H 0.063 0.937 45 H 0.004 0.996 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.450 -9.868 -14.988 21.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.236 4.236 3 Si 0.788 3.212 4 H -0.202 1.202 5 H -0.225 1.225 6 H -0.203 1.203 7 C -0.393 4.393 8 H 0.085 0.915 9 N -0.325 5.325 10 C 0.014 3.986 11 C -0.154 4.154 12 C -0.152 4.152 13 C 0.072 3.928 14 C -0.004 4.004 15 O -0.386 6.386 16 N -0.337 5.337 17 C 0.305 3.695 18 O -0.457 6.457 19 C -0.162 4.162 20 C -0.056 4.056 21 C -0.084 4.084 22 C -0.398 4.398 23 S 0.410 5.590 24 C -0.282 4.282 25 N -0.218 5.218 26 C 0.067 3.933 27 H 0.058 0.942 28 H 0.031 0.969 29 H 0.073 0.927 30 H 0.097 0.903 31 H 0.071 0.929 32 H 0.084 0.916 33 H 0.094 0.906 34 H 0.068 0.932 35 H 0.080 0.920 36 H 0.236 0.764 37 H 0.235 0.765 38 H 0.111 0.889 39 H 0.115 0.885 40 H 0.110 0.890 41 H 0.091 0.909 42 H 0.213 0.787 43 H 0.241 0.759 44 H 0.082 0.918 45 H 0.022 0.978 Dipole moment (debyes) X Y Z Total from point charges 12.082 -10.058 -15.174 21.850 hybrid contribution -1.222 1.251 0.556 1.835 sum 10.860 -8.808 -14.619 20.229 Atomic orbital electron populations 1.70159 1.06674 1.25863 1.54706 1.25757 0.95810 1.01254 1.00824 0.85465 0.77642 0.79686 0.78369 1.20174 1.22522 1.20264 1.19375 0.92635 0.85584 1.41743 0.91531 1.44194 1.37663 1.02728 1.47917 1.21089 0.97378 0.86190 0.93909 1.21790 0.97209 0.99259 0.97151 1.21682 0.98975 0.95480 0.99106 1.21012 0.84655 0.96024 0.91132 1.22523 0.96665 0.86078 0.95177 1.86519 1.54578 1.34893 1.62603 1.45836 1.31024 1.24586 1.32300 1.20851 0.86445 0.82870 0.79370 1.90547 1.60729 1.28007 1.66426 1.21468 0.95103 1.01447 0.98213 1.19758 0.92152 0.98516 0.95200 1.20374 0.97934 0.89191 1.00874 1.27191 0.96864 1.06828 1.08898 1.83822 1.19009 1.06827 1.49389 1.28925 0.92001 1.04980 1.02334 1.66121 1.22807 1.20852 1.11978 1.20598 0.88347 0.97106 0.87284 0.94212 0.96884 0.92667 0.90315 0.92886 0.91630 0.90626 0.93247 0.92010 0.76435 0.76496 0.88941 0.88478 0.88962 0.90902 0.78711 0.75919 0.91849 0.97833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.24 11.33 21.65 0.25 -54.00 16 2 C -0.04 -2.18 4.90 84.86 0.42 -1.76 16 3 Si 0.96 44.10 29.59 68.60 2.03 46.12 16 4 H -0.28 -12.24 7.11 99.48 0.71 -11.54 16 5 H -0.30 -14.02 7.11 99.48 0.71 -13.32 16 6 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 7 C -0.26 -13.90 9.56 84.03 0.80 -13.10 16 8 H 0.07 3.43 7.88 -2.91 -0.02 3.40 16 9 N -0.60 -29.07 2.90 -699.09 -2.03 -31.09 16 10 C 0.14 5.68 6.51 86.36 0.56 6.24 16 11 C -0.12 -3.90 5.93 30.67 0.18 -3.72 16 12 C -0.11 -3.96 4.44 30.62 0.14 -3.82 16 13 C 0.16 6.15 0.45 3.68 0.00 6.15 16 14 C 0.07 2.65 5.66 71.98 0.41 3.05 16 15 O -0.58 -20.82 13.08 -148.98 -1.95 -22.77 16 16 N -0.69 -25.29 3.94 -422.55 -1.67 -26.96 16 17 C 0.52 17.14 7.19 87.65 0.63 17.77 16 18 O -0.58 -20.71 12.30 -3.04 -0.04 -20.75 16 19 C -0.12 -3.33 5.61 29.85 0.17 -3.16 16 20 C -0.02 -0.39 5.00 29.85 0.15 -0.24 16 21 C 0.05 1.07 6.07 41.52 0.25 1.32 16 22 C -0.26 -4.47 11.07 66.78 0.74 -3.73 16 23 S 0.16 2.10 23.22 -56.49 -1.31 0.78 16 24 C 0.02 0.25 12.23 130.65 1.60 1.85 16 25 N -0.50 -11.90 10.35 -191.54 -1.98 -13.88 16 26 C 0.19 9.15 3.84 86.36 0.33 9.48 16 27 H 0.25 14.27 8.31 -92.71 -0.77 13.50 16 28 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 29 H 0.05 2.19 7.94 -2.39 -0.02 2.17 16 30 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 31 H 0.05 1.85 7.48 -2.39 -0.02 1.83 16 32 H 0.07 2.20 8.14 -2.38 -0.02 2.18 16 33 H 0.08 2.61 6.24 -2.39 -0.01 2.59 16 34 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 35 H 0.06 2.17 6.33 -2.39 -0.02 2.15 16 36 H 0.39 9.91 9.12 -74.06 -0.68 9.23 16 37 H 0.40 15.84 8.48 -92.72 -0.79 15.06 16 38 H 0.09 2.64 8.08 -2.39 -0.02 2.62 16 39 H 0.10 2.48 8.14 -2.39 -0.02 2.46 16 40 H 0.09 2.08 7.99 -2.39 -0.02 2.06 16 41 H 0.07 1.95 8.10 -2.39 -0.02 1.93 16 42 H 0.20 2.47 8.06 -2.91 -0.02 2.45 16 43 H 0.22 2.16 8.06 -2.91 -0.02 2.14 16 44 H 0.06 3.47 6.06 -2.39 -0.01 3.45 16 45 H 0.00 0.19 8.14 -2.39 -0.02 0.17 16 Total: -1.00 -68.13 373.47 -0.76 -68.89 By element: Atomic # 1 Polarization: 37.75 SS G_CDS: -0.44 Total: 37.32 kcal Atomic # 6 Polarization: 9.96 SS G_CDS: 6.38 Total: 16.34 kcal Atomic # 7 Polarization: -120.50 SS G_CDS: -5.43 Total: -125.93 kcal Atomic # 8 Polarization: -41.53 SS G_CDS: -1.99 Total: -43.52 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.12 kcal Atomic # 16 Polarization: 2.10 SS G_CDS: -1.31 Total: 0.78 kcal Total: -68.13 -0.76 -68.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484450802.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.178 kcal (2) G-P(sol) polarization free energy of solvation -68.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds